3P34A

Polo-like kinase i polo-box domain in complex with mqsptpl phosphopeptide
Total Genus 75
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
75
sequence length
230
structure length
230
Chain Sequence
GPLGSPEFDCHLSDMLQQLHSVNASKPSERGLVRQEEAEDPACIPIFWVSKWVDYSDKYGLGYQLCDNSVGVLFNDSTRLILYNDGDSLQYIERDGTESYLTVSSHPNSLMKKITLLKYFRNYMSEHLLKAGANITPREGDELARLPYLRTWFRTRSAIILHLSNGSVQINFFQDHTKLILCPLMAAVTYIDEKRDFRTYRLSLLEEYGCCKELASRLRYARTMVDKLLS
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transferase
molecule keywords Serine/threonine-protein kinase PLK1
publication title From crystal packing to molecular recognition: prediction and discovery of a binding site on the surface of polo-like kinase 1
pubmed doi rcsb
source organism Homo sapiens
total genus 75
structure length 230
sequence length 230
ec nomenclature ec 2.7.11.21: Polo kinase.
pdb deposition date 2010-10-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00659 POLO_box POLO box duplicated region
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1120.30 Alpha Beta 2-Layer Sandwich Arylsulfatase, C-terminal domain POLO box domain 3p34A02
3.30.1120.30 Alpha Beta 2-Layer Sandwich Arylsulfatase, C-terminal domain POLO box domain 3p34A01
4RCPA 4J7BB 4WHHA 2OJXA 5DMVC 2N19A 4WHLA 3P2ZA 5DMSA 4RS6A 3FVHA 4HABA 3P2WA 3P37A 3BZIA 3C5LA 4HCOA 3P36A 4DFWA 5LHZA 2OGQA 3HIHA 4HY2A 4YYPA 4O56A 4H5XA 3P35A 4LKMA 4O9WA 1UMWA 4O6WA 3P34A 4LKLA 4E9CA 4X9RA 5J19A 4XB0A 3HIKA 3Q1IA 4X9VA 3RQ7A 1Q4KA 4WHKA 5DNJA 4E67A 4X9WA 1Q4OA 4H71A 4E9DA
chains in the Genus database with same CATH superfamily
1E3CP 5AJ9A 2OJXA 5DMVC 1N2KA 4WHLA 5DMSA 4HCOA 2UV8G 1E1ZP 4N7VA 4CXUA 4FDIA 1UMWA 3P34A 3LXQA 4FDJA 4G7NA 1N2LA 5DNJA 4E67A 1Q4OA 4RCPA 4NKBA 2N19A 4N7ZA 3P2WA 1E2TA 1FSUA 2IA9A 1E2SP 4CXSA 4LKLA 4E9CA 4E9DA 5DAYA 4X9VA 1A87A 2QZUA 4H71A 3FS3A 4J7BB 4NK7A 3P2ZA 3GYWA 3FVHA 1HDHA 4HABA 4CYSA 3ED4A 1E33P 3C5LA 2I9ZA 3P36A 2VKZG 4DFWA 2OGQA 3HIHA 4HY2A 4YYPA 4O56A 3KDRA 4LKMA 3HMJG 4N9JA 4O6WA 5J19A 4XB0A 3HIKA 3Q1IA 1AUKA 3RQ7A 3HFDA 4X9WA 2E50A 4WHHA 4RS6A 3P37A 3BZIA 2I9XA 5LHZA 3P35A 4H5XA 4CXKA 4O9WA 3LM3A 4CYRA 4X9RA 1F34B 1F32A 3GYVA 1Q4KA 4WHKA 1P49A
chains in the Genus database with same CATH topology
4RCPA 4J7BB 4WHHA 2OJXA 5DMVC 2N19A 4WHLA 3P2ZA 5DMSA 4RS6A 3FVHA 4HABA 3P2WA 3P37A 3BZIA 3C5LA 4HCOA 3P36A 4DFWA 5LHZA 2OGQA 3HIHA 4HY2A 4YYPA 4O56A 4H5XA 3P35A 4LKMA 4O9WA 1UMWA 4O6WA 3P34A 4LKLA 4E9CA 4X9RA 5J19A 4XB0A 3HIKA 3Q1IA 4X9VA 3RQ7A 1Q4KA 4WHKA 5DNJA 4E67A 4X9WA 1Q4OA 4H71A 4E9DA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4RCP A;  4J7B B;  4WHH A;  2OJX A;  5DMV C;  2N19 A;  4WHL A;  3P2Z A;  5DMS A;  4RS6 A;  3FVH A;  4HAB A;  3P2W A;  3P37 A;  3BZI A;  3C5L A;  4HCO A;  3P36 A;  4DFW A;  5LHZ A;  2OGQ A;  3HIH A;  4HY2 A;  4YYP A;  4O56 A;  4H5X A;  3P35 A;  4LKM A;  4O9W A;  1UMW A;  4O6W A;  3P34 A;  4LKL A;  4E9C A;  4X9R A;  5J19 A;  4XB0 A;  3HIK A;  3Q1I A;  4X9V A;  3RQ7 A;  1Q4K A;  4WHK A;  5DNJ A;  4E67 A;  4X9W A;  1Q4O A;  4H71 A;  4E9D A; 
#chains in the Genus database with same CATH topology
 1E3C P;  5AJ9 A;  2OJX A;  5DMV C;  1N2K A;  4WHL A;  5DMS A;  4HCO A;  2UV8 G;  1E1Z P;  4N7V A;  4CXU A;  4FDI A;  1UMW A;  3P34 A;  3LXQ A;  4FDJ A;  4G7N A;  1N2L A;  5DNJ A;  4E67 A;  1Q4O A;  4RCP A;  4NKB A;  2N19 A;  4N7Z A;  3P2W A;  1E2T A;  1FSU A;  2IA9 A;  1E2S P;  4CXS A;  4LKL A;  4E9C A;  4E9D A;  5DAY A;  4X9V A;  1A87 A;  2QZU A;  4H71 A;  3FS3 A;  4J7B B;  4NK7 A;  3P2Z A;  3GYW A;  3FVH A;  1HDH A;  4HAB A;  4CYS A;  3ED4 A;  1E33 P;  3C5L A;  2I9Z A;  3P36 A;  2VKZ G;  4DFW A;  2OGQ A;  3HIH A;  4HY2 A;  4YYP A;  4O56 A;  3KDR A;  4LKM A;  3HMJ G;  4N9J A;  4O6W A;  5J19 A;  4XB0 A;  3HIK A;  3Q1I A;  1AUK A;  3RQ7 A;  3HFD A;  4X9W A;  2E50 A;  4WHH A;  4RS6 A;  3P37 A;  3BZI A;  2I9X A;  5LHZ A;  3P35 A;  4H5X A;  4CXK A;  4O9W A;  3LM3 A;  4CYR A;  4X9R A;  1F34 B;  1F32 A;  3GYV A;  1Q4K A;  4WHK A;  1P49 A; 
#chains in the Genus database with same CATH homology
 4RCP A;  4J7B B;  4WHH A;  2OJX A;  5DMV C;  2N19 A;  4WHL A;  3P2Z A;  5DMS A;  4RS6 A;  3FVH A;  4HAB A;  3P2W A;  3P37 A;  3BZI A;  3C5L A;  4HCO A;  3P36 A;  4DFW A;  5LHZ A;  2OGQ A;  3HIH A;  4HY2 A;  4YYP A;  4O56 A;  4H5X A;  3P35 A;  4LKM A;  4O9W A;  1UMW A;  4O6W A;  3P34 A;  4LKL A;  4E9C A;  4X9R A;  5J19 A;  4XB0 A;  3HIK A;  3Q1I A;  4X9V A;  3RQ7 A;  1Q4K A;  4WHK A;  5DNJ A;  4E67 A;  4X9W A;  1Q4O A;  4H71 A;  4E9D A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...