3PE5A

Three-dimensional structure of protein a7vv38_9clot from clostridium leptum dsm 753, northeast structural genomics consortium target qlr103
Total Genus 76
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
76
sequence length
278
structure length
278
Chain Sequence
TLIKDPMVLNIMLFGSDERPGETGYGRSDTMMLLSIDNRNKKLKLTSFMRDTYVNVPEWGDTKLTHAYSYGGPALAIETIERNFGIDIDRYAVVYFDTFPGIVDTLGGIEVEMTQTEADVMNESVGPEFANFTEGKNTLNGATALVYVRIRYGVGDDFGRTQRQRDFMLQVLNKVKGTRDVGTLLTLLTKILPGVTTNISVNEMAGLAGGAISSYMDYPMYQFRLPEDGAFSAVDVDAGNVLAIDDWDAAREHLQRFIYEDTVDPIYGPSTETYGSEM
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
molecule keywords Uncharacterized protein
publication title Northeast Structural Genomics Consortium Target QlR103
rcsb
source organism Clostridium leptum
total genus 76
structure length 278
sequence length 278
chains with identical sequence B
ec nomenclature
pdb deposition date 2010-10-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03816 LytR_cpsA_psr Cell envelope-related transcriptional attenuator domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.260.150 Mainly Alpha Orthogonal Bundle 434 Repressor (Amino-terminal Domain) 434 Repressor (Amino-terminal Domain) 3pe5A00
3OWQA 3NROA 3MEJA 2XXPA 4OBMA 4DE8A 4DE9A 3QFIA 3TEPA 3OKZA 3NXHA 3TFLA 2XXQA 3PE5A 3TELA
chains in the Genus database with same CATH superfamily
3OWQA 2XXPA 3F52A 2PIJA 2PE5A 1XWRA 3UWPA 4MCXA 4ER0A 4Z58A 1LLIA 3O9XA 1ZAYA 3BD1A 4JCXA 2FFHA 3OQNA 3FMYA 2PUEA 4DE8A 2XXAA 2IV1A 1E3OC 1L1MA 3HZIB 4YG1A 3NZLA 4I6UA 4Y42A 3EUSA 2B5AA 4PU8A 2XIUA 2L8NA 4JCYA 5K98B 3CROL 2MQKA 3JXCL 3CECA 4PU4C 2J7UA 4JQDA 2EBYA 4PU3C 4X4GA 2JCGA 2LNMA 3JXDL 3R09A 2PUGA 1YSEA 2PXKA 4YARA 3SX0A 3QFIA 2EWTA 4X4IA 1WETA 1U2ZA 1Y7YA 3KZ3A 1ZUGA 3H5TA 4ER6A 1WIZA 1X57A 3GZDA 2YBDA 4X4CA 2JVLA 3GZDC 1PRVA 4IA8A 1DW9A 1OCTC 2A6CA 2AXVA 1ZZCA 3NXHA 3G5GA 2LLVA 2L49A 3JXBC 2OR1L 2BNOA 2PUCA 3GBFA 4HRAA 1LCCA 2O38A 2FJRA 3LISA 2XCJA 1QZXA 2L1PA 1QQAA 2BNNA 3G7DA 1LQCA 4EZIA 3ZPXA 2H8RA 3KL4A 3RZZA 1WH6A 2PPXA 3BDNA 4I6RA 3PE5A 1BDIA 3NROA 1DWKA 1RPEL 1O4XA 3BS3A 4MCTA 1LCDA 1NERA 2PXVA 2IU7A 4X4EA 3KXAA 2LYSA 4Z5DA 1RZSA 4J1WA 1ADRA 1EFAA 4Z5HA 4Q2JA 1RIOA 3OQMA 3FYAA 1CQTA 4IVZA 3VWSA 1ZVVA 2IUOA 4GHJA 2LYRA 4I6TA 1B0NA 2AUWA 2BNMA 1OSLA 2PXBA 2XSDC 4X4BA 4EK9A 2EF8A 3L1PA 2AXZA 4EQZA 2PXUA 2XI8A 3GN5B 1VPWA 2KEJA 2GRMA 2PXTA 1PRUA 2PXLA 2KZ8A 3GUUA 4PU7A 3TEPA 2O4AA 4O8BA 2HINA 3DNVB 3ZHMA 2PUAA 2PUFA 1HQ1A 4I8TA 4X4HA 3QOXA 4Z59A 1PRAA 1CJGA 1AU7A 2M4HA 3S8QA 2ICPA 2D5VA 5DRYA 3TFLA 1POUA 3KJXA 1JFSA 2LYJA 4F8DA 2HSGA 3G0TA 2PXQA 1HF0A 1SQ8A 1NW3A 1QB2A 1QPZA 1PERL 3ZHIA 3NDBB 1S7EA 1QQBA 2XXQA 3TRBA 3QQ6A 2MXDA 5DSXA 2OFYA 2WUSR 5DTQA 4IWRA 2ICTA 4EKIA 2PXPA 1MFQC 4ER3A 3QF3A 1R63A 4YBAA 4WVLA 2AW6A 2O49A 4ER5A 3U3WA 1QP7A 2HFZA 2IVGA 1UXCA 1ZZ8A 3SR4A 2R1JL 1JWLA 2LYPA 3F6WA 3TELA 5GAGi 2GRLA 2LLWA 2IVQA 3GN5A 2VEOA 1NEQA 5A7LA 3IVPA 5JUWA 4DE9A 1LMB3 4X4FA 3GZCA 3F51A 2PUBA 2CSFA 4J1XA 3DM5A 2LCVA 4NDWA 4YG7B 1GT0C 3CLCA 4X4DA 1RZRD 3SCFA 2XJ3A 2LYKA 3OKZA 2HCNA 2PXFA 2PXEA 3FYMA 3OP9A 2ODRD 1R69A 4ER7A 1Y9QA 2PXDA 1WH8A 2MEZA 2HCSA 2AXUA 3D1NI 2V3CC 3ME5A 3OMTA 2WIUB 2GZUA 1IC8A 5DRTA 2KEIA 1ZPQA 2J7WA 4OB4A 3SCHA 1ZZ6A 3R1FA 2LYQA 2KEKA 3QWGA 1UTXA 5DTRA 4EKGA 2LYLA 2CROA 3A9ZA 1QP0A 2KPJA 3LFPA 1QP4A 3QYXA 4FN3A 3LQXA 1PNRA 4Z5CA 1ZZBA 1JFTA 3M9LA 3SCGA 1UXDA 2AWIA 2PUDA 3MLFA 5DTMA 4GQMA 2IVBA 3A9XA 1ZS4A 2BJCA 2R63A 1BDHA 3MEJA 3B7HA 3QOWA 1ZZ9A 4YG4A 5DT2A 4OBMA 3A9YA 1RZRA 3PXPA 1DULA 1ZZ7A 2JQEA 4FBIA 1JH9A 3VK0A 5GAHi 3UFDA 3OQOA 3ZKCA 1X2LA
chains in the Genus database with same CATH topology
3GUUA 3OWQA 3MEJA 2XXPA 3NROA 3NZLA 3GZDC 2LNMA 4EKIA 2ODRD 3R09A 5DRTA 3VWSA 2LLWA 3TEPA 3G0TA 3QOWA 2VEOA 3TFLA 3UWPA 4ER7A 4ER3A 2J7WA 2L1PA 5DT2A 3M9LA 4OBMA 3A9YA 4ER0A 3SX0A 3QFIA 1NW3A 2HCSA 1U2ZA 3OKZA 4WVLA 3NXHA 2LLVA 2HCNA 4EK9A 4ER5A 5JUWA 4DE9A 4EQZA 3QOXA 5DTQA 2HFZA 3GZCA 3ME5A 5DTRA 2J7UA 3ZPXA 2XXQA 3A9ZA 4EKGA 4ER6A 4EZIA 4HRAA 2MXDA 3SR4A 4DE8A 5DTMA 5DSXA 3GZDA 2M4HA 2YBDA 4Q2JA 3A9XA 5DRYA 3PE5A 3TELA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3OWQ A;  3NRO A;  3MEJ A;  2XXP A;  4OBM A;  4DE8 A;  4DE9 A;  3QFI A;  3TEP A;  3OKZ A;  3NXH A;  3TFL A;  2XXQ A;  3PE5 A;  3TEL A; 
#chains in the Genus database with same CATH topology
 3OWQ A;  2XXP A;  3F52 A;  2PIJ A;  2PE5 A;  1XWR A;  3UWP A;  4MCX A;  4ER0 A;  4Z58 A;  1LLI A;  3O9X A;  1ZAY A;  3BD1 A;  4JCX A;  2FFH A;  3OQN A;  3FMY A;  2PUE A;  4DE8 A;  2XXA A;  2IV1 A;  1E3O C;  1L1M A;  3HZI B;  4YG1 A;  3NZL A;  4I6U A;  4Y42 A;  3EUS A;  2B5A A;  4PU8 A;  2XIU A;  2L8N A;  4JCY A;  5K98 B;  3CRO L;  2MQK A;  3JXC L;  3CEC A;  4PU4 C;  2J7U A;  4JQD A;  2EBY A;  4PU3 C;  4X4G A;  2JCG A;  2LNM A;  3JXD L;  3R09 A;  2PUG A;  1YSE A;  2PXK A;  4YAR A;  3SX0 A;  3QFI A;  2EWT A;  4X4I A;  1WET A;  1U2Z A;  1Y7Y A;  3KZ3 A;  1ZUG A;  3H5T A;  4ER6 A;  1WIZ A;  1X57 A;  3GZD A;  2YBD A;  4X4C A;  2JVL A;  3GZD C;  1PRV A;  4IA8 A;  1DW9 A;  1OCT C;  2A6C A;  2AXV A;  1ZZC A;  3NXH A;  3G5G A;  2LLV A;  2L49 A;  3JXB C;  2OR1 L;  2BNO A;  2PUC A;  3GBF A;  4HRA A;  1LCC A;  2O38 A;  2FJR A;  3LIS A;  2XCJ A;  1QZX A;  2L1P A;  1QQA A;  2BNN A;  3G7D A;  1LQC A;  4EZI A;  3ZPX A;  2H8R A;  3KL4 A;  3RZZ A;  1WH6 A;  2PPX A;  3BDN A;  4I6R A;  3PE5 A;  1BDI A;  3NRO A;  1DWK A;  1RPE L;  1O4X A;  3BS3 A;  4MCT A;  1LCD A;  1NER A;  2PXV A;  2IU7 A;  4X4E A;  3KXA A;  2LYS A;  4Z5D A;  1RZS A;  4J1W A;  1ADR A;  1EFA A;  4Z5H A;  4Q2J A;  1RIO A;  3OQM A;  3FYA A;  1CQT A;  4IVZ A;  3VWS A;  1ZVV A;  2IUO A;  4GHJ A;  2LYR A;  4I6T A;  1B0N A;  2AUW A;  2BNM A;  1OSL A;  2PXB A;  2XSD C;  4X4B A;  4EK9 A;  2EF8 A;  3L1P A;  2AXZ A;  4EQZ A;  2PXU A;  2XI8 A;  3GN5 B;  1VPW A;  2KEJ A;  2GRM A;  2PXT A;  1PRU A;  2PXL A;  2KZ8 A;  3GUU A;  4PU7 A;  3TEP A;  2O4A A;  4O8B A;  2HIN A;  3DNV B;  3ZHM A;  2PUA A;  2PUF A;  1HQ1 A;  4I8T A;  4X4H A;  3QOX A;  4Z59 A;  1PRA A;  1CJG A;  1AU7 A;  2M4H A;  3S8Q A;  2ICP A;  2D5V A;  5DRY A;  3TFL A;  1POU A;  3KJX A;  1JFS A;  2LYJ A;  4F8D A;  2HSG A;  3G0T A;  2PXQ A;  1HF0 A;  1SQ8 A;  1NW3 A;  1QB2 A;  1QPZ A;  1PER L;  3ZHI A;  3NDB B;  1S7E A;  1QQB A;  2XXQ A;  3TRB A;  3QQ6 A;  2MXD A;  5DSX A;  2OFY A;  2WUS R;  5DTQ A;  4IWR A;  2ICT A;  4EKI A;  2PXP A;  1MFQ C;  4ER3 A;  3QF3 A;  1R63 A;  4YBA A;  4WVL A;  2AW6 A;  2O49 A;  4ER5 A;  3U3W A;  1QP7 A;  2HFZ A;  2IVG A;  1UXC A;  1ZZ8 A;  3SR4 A;  2R1J L;  1JWL A;  2LYP A;  3F6W A;  3TEL A;  5GAG i;  2GRL A;  2LLW A;  2IVQ A;  3GN5 A;  2VEO A;  1NEQ A;  5A7L A;  3IVP A;  5JUW A;  4DE9 A;  1LMB 3;  4X4F A;  3GZC A;  3F51 A;  2PUB A;  2CSF A;  4J1X A;  3DM5 A;  2LCV A;  4NDW A;  4YG7 B;  1GT0 C;  3CLC A;  4X4D A;  1RZR D;  3SCF A;  2XJ3 A;  2LYK A;  3OKZ A;  2HCN A;  2PXF A;  2PXE A;  3FYM A;  3OP9 A;  2ODR D;  1R69 A;  4ER7 A;  1Y9Q A;  2PXD A;  1WH8 A;  2MEZ A;  2HCS A;  2AXU A;  3D1N I;  2V3C C;  3ME5 A;  3OMT A;  2WIU B;  2GZU A;  1IC8 A;  5DRT A;  2KEI A;  1ZPQ A;  2J7W A;  4OB4 A;  3SCH A;  1ZZ6 A;  3R1F A;  2LYQ A;  2KEK A;  3QWG A;  1UTX A;  5DTR A;  4EKG A;  2LYL A;  2CRO A;  3A9Z A;  1QP0 A;  2KPJ A;  3LFP A;  1QP4 A;  3QYX A;  4FN3 A;  3LQX A;  1PNR A;  4Z5C A;  1ZZB A;  1JFT A;  3M9L A;  3SCG A;  1UXD A;  2AWI A;  2PUD A;  3MLF A;  5DTM A;  4GQM A;  2IVB A;  3A9X A;  1ZS4 A;  2BJC A;  2R63 A;  1BDH A;  3MEJ A;  3B7H A;  3QOW A;  1ZZ9 A;  4YG4 A;  5DT2 A;  4OBM A;  3A9Y A;  1RZR A;  3PXP A;  1DUL A;  1ZZ7 A;  2JQE A;  4FBI A;  1JH9 A;  3VK0 A;  5GAH i;  3UFD A;  3OQO A;  3ZKC A;  1X2L A; 
#chains in the Genus database with same CATH homology
 3GUU A;  3OWQ A;  3MEJ A;  2XXP A;  3NRO A;  3NZL A;  3GZD C;  2LNM A;  4EKI A;  2ODR D;  3R09 A;  5DRT A;  3VWS A;  2LLW A;  3TEP A;  3G0T A;  3QOW A;  2VEO A;  3TFL A;  3UWP A;  4ER7 A;  4ER3 A;  2J7W A;  2L1P A;  5DT2 A;  3M9L A;  4OBM A;  3A9Y A;  4ER0 A;  3SX0 A;  3QFI A;  1NW3 A;  2HCS A;  1U2Z A;  3OKZ A;  4WVL A;  3NXH A;  2LLV A;  2HCN A;  4EK9 A;  4ER5 A;  5JUW A;  4DE9 A;  4EQZ A;  3QOX A;  5DTQ A;  2HFZ A;  3GZC A;  3ME5 A;  5DTR A;  2J7U A;  3ZPX A;  2XXQ A;  3A9Z A;  4EKG A;  4ER6 A;  4EZI A;  4HRA A;  2MXD A;  3SR4 A;  4DE8 A;  5DTM A;  5DSX A;  3GZD A;  2M4H A;  2YBD A;  4Q2J A;  3A9X A;  5DRY A;  3PE5 A;  3TEL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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