3PZLA

The crystal structure of agmatine ureohydrolase of thermoplasma volcanium
Total Genus 106
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
106
Knots found
sequence length
290
structure length
290
Chain Sequence
ASELRSIFSLKKIADAVNGYEEAKYVVFGIPFDNTSSYRRGSKYAPDSIRGAYVNLESYEYSYGIDLLASGMADLGDMEESEDVEYVIDTVESVVSAVMSDGKIPIMLGGEHSITVGAVRALPKDVDLVIVDAHSDFRSSYMGNKYNHACVTRRALDLLGEGRITSIGIRSVSREEFEDPDFRKVSFISSFDVKKNGIDKYIEEVDRKSRRVYISVDMDGIDPAYAPAVGTPEPFGLADTDVRRLIERLSYKAVGFDIVEFSPLYDNGNTSMLAAKLLQVFIASREKYYK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Agmatine ureohydrolase
publication title The crystal structure of agmatine ureohydrolase of Thermoplasma volcanium
rcsb
source organism Thermoplasma volcanium gss1
total genus 106
structure length 290
sequence length 290
chains with identical sequence B, C
other databases KnotProt 2.0: S +31 +31 +31
ec nomenclature
pdb deposition date 2010-12-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00491 Arginase Arginase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.800.10 Alpha Beta 3-Layer(aba) Sandwich Arginase; Chain A Ureohydrolase domain 3pzlA00
1WVAA 4Q3VA 4RHMA 3SL1A 4Q3UA 3E8QA 1ZPEA 3E9BA 1GQ6A 4CEVA 4IU0A 4Q42A 1P8NA 1P8SA 1TA1A 1GQ7A 1R1OA 4MYLA 4IE2A 4HXQA 1T4RA 1TBHA 4IU5A 3TH7A 1HQXA 4RHKA 3GMZA 2PHAA 2RLAA 3NIPA 1WOGA 4MYNA 3MFWA 2AEBA 2A0MA 4Q3SA 4RHIA 3E6KA 4FCKA 3DJ8A 1T4TA 1RLAA 1P8RA 1HQGA 4RLAA 1P8OA 3LP7A 4RHLA 4MYKA 1HQFA 3NIOA 2PHOA 4GWDA 4IXUA 2EF5A 3LP4A 3F80A 5CEVA 1T4PA 4Q40A 3THHA 1WOIA 3PZLA 1CEVA 3MJLA 3THEA 2EIVA 1PQ3A 3MMRA 4DZ4A 4RHQA 4I06A 1WOHA 4ITYA 3SKKA 3TF3A 1T5GA 4IE1A 4HZEA 2CEVA 4HWWA 1ZPGA 2ZAVA 4MXRA 3E8ZA 1HQ5A 3KV2A 1TBLA 4Q3RC 4GSVA 4Q3TA 3E6VA 3LHLA 4IE3A 4MYFA 5HJ9A 4IXVA 1D3VA 5HJAA 4Q41A 4Q3PA 1HQHA 3M1RA 3GN0A 5RLAA 1T5FA 2EF4A 1P8MA 4IU1A 3MFVA 4IU4A 3NIQA 4FCIA 1TBJA 4Q3RA 4G3HA 4Q3QA 1P8QA 3RLAA 3SJTA 4GWCA 4GSMA 1T4SA 3THJA 1XFKA 1WVBA 3SL0A 2PLLA 4RHJA 4GSZA 1P8PA 3CEVA
chains in the Genus database with same CATH superfamily
1WVAA 1W22A 5G1CA 4Q3VA 5LI3A 4RHMA 5D1CA 3SL1A 4Q3UA 3E8QA 5FUEA 5EFJD 1ZPEA 3E9BA 1GQ6A 5EEKA 4CEVA 5D1BA 4IU0A 4Q42A 2V5WA 1P8NA 1P8SA 1TA1A 1GQ7A 1R1OA 3Q9EA 4MYLA 2VQJA 4IE2A 4HXQA 1T4RA 1TBHA 3Q9BA 4IU5A 1C3SA 3MZ3A 5DC5A 3EWFA 3TH7A 5ICNB 1HQXA 4BZ6A 4QA4A 4RHKA 3GMZA 2PHAA 2RLAA 3NIPA 1WOGA 4MYNA 3MFWA 2GH6A 2AEBA 2A0MA 4Q3SA 4QA3A 3C0ZA 3E6KA 4FCKA 4RHIA 4ZUOA 3MAXA 4LY1A 4BKXB 5EF7A 1C3PA 3DJ8A 3C0YA 1T4TA 1RLAA 1T64A 1P8RA 4QA7A 3C10A 4ZUNA 1HQGA 4RLAA 1P8OA 3LP7A 4RHLA 4MYKA 3F06A 1HQFA 5G1BA 5G3WA 3NIOA 2PHOA 4GWDA 4CQFA 5THUA 4IXUA 2EF5A 4A69A 3LP4A 3F80A 1VKGA 5EEFA 1T4PA 4Q40A 4ZURA 5G12A 3THHA 5CEVA 1WOIA 5EENA 3PZLA 1CEVA 3MJLA 2VCGA 3EZPA 2VQQA 2EIVA 3THEA 4RN1A 1PQ3A 3MMRA 3EZTA 3RQDA 5EEMA 4DZ4A 5EFHA 5EFBD 4RHQA 3MENA 4I06A 5EFNA 1WOHA 5EEIA 4ITYA 4LXZA 5FCWA 5IWGA 3SKKA 3F07A 4BZ5A 3TF3A 5G13A 5BWZA 1T67A 1T5GA 2V5XA 5G1AA 3ZNSA 4IE1A 4HZEA 2CEVA 5G10A 5A2SA 1ZZ0A 4HWWA 5THTA 3Q9CA 5DC7A 5G0JA 1ZPGA 2ZAVA 5G0HA 4QA5A 4MXRA 5G17A 3E8ZA 1HQ5A 3KV2A 4CBTA 4QA2A 1T69A 4BZ8A 1TBLA 4BZ9A 4Q3RC 4GSVA 4Q3TA 4ZUPA 5G0XA 5IX0A 3E6VA 3LHLA 4RN0A 2VQVA 4BZ7A 4IE3A 4MYFA 5HJ9A 4IXVA 3SFHA 3MZ6A 1D3VA 5G0IA 5EF8A 5HJAA 5EFKB 4Q3PA 4Q41A 4ZUQA 1HQHA 3M1RA 3GN0A 5RLAA 5G0YA 4CBYA 5THSA 1T5FA 5D1DA 4ZUMA 4RN2A 3MZ7A 2EF4A 5EFGA 1P8MA 4IU1A 1ZZ1A 1ZZ3A 2VQOA 3MFVA 4QA6A 4IU4A 3NIQA 4QA1A 3ZNRA 4FCIA 1TBJA 4Q3RA 4G3HA 4Q3QA 2VQWG 2VQMA 4QA0A 1P8QA 3RLAA 5G11A 3SFFA 3SJTA 3EW8A 4GWCA 4GSMA 1T4SA 3Q9FA 1XFKA 3THJA 5JI5A 1WVBA 5THVA 3SL0A 2PLLA 1C3RA 3F0RA 4RHJA 4GSZA 5DC6A 1P8PA 5DC8A 3CEVA 3MZ4A 5G0GA
chains in the Genus database with same CATH topology
1WVAA 4Q3VA 4RHMA 3SL1A 4Q3UA 3E8QA 1ZPEA 3E9BA 1GQ6A 4CEVA 4IU0A 4Q42A 1P8NA 1P8SA 1TA1A 1GQ7A 1R1OA 4MYLA 4IE2A 4HXQA 1T4RA 1TBHA 4IU5A 3TH7A 1HQXA 4RHKA 3GMZA 2PHAA 2RLAA 3NIPA 1WOGA 4MYNA 3MFWA 2AEBA 2A0MA 4Q3SA 4RHIA 3E6KA 4FCKA 3DJ8A 1T4TA 1RLAA 1P8RA 1HQGA 4RLAA 1P8OA 3LP7A 4RHLA 4MYKA 1HQFA 3NIOA 2PHOA 4GWDA 4IXUA 2EF5A 3LP4A 3F80A 5CEVA 1T4PA 4Q40A 3THHA 1WOIA 3PZLA 1CEVA 3MJLA 3THEA 2EIVA 1PQ3A 3MMRA 4DZ4A 4RHQA 4I06A 1WOHA 4ITYA 3SKKA 3TF3A 1T5GA 4IE1A 4HZEA 2CEVA 4HWWA 1ZPGA 2ZAVA 4MXRA 3E8ZA 1HQ5A 3KV2A 1TBLA 4Q3RC 4GSVA 4Q3TA 3E6VA 3LHLA 4IE3A 4MYFA 5HJ9A 4IXVA 1D3VA 5HJAA 4Q41A 4Q3PA 1HQHA 3M1RA 3GN0A 5RLAA 1T5FA 2EF4A 1P8MA 4IU1A 3MFVA 4IU4A 3NIQA 4FCIA 1TBJA 4Q3RA 4G3HA 4Q3QA 1P8QA 3RLAA 3SJTA 4GWCA 4GSMA 1T4SA 3THJA 1XFKA 1WVBA 3SL0A 2PLLA 4RHJA 4GSZA 1P8PA 3CEVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1WVA A;  4Q3V A;  4RHM A;  3SL1 A;  4Q3U A;  3E8Q A;  1ZPE A;  3E9B A;  1GQ6 A;  4CEV A;  4IU0 A;  4Q42 A;  1P8N A;  1P8S A;  1TA1 A;  1GQ7 A;  1R1O A;  4MYL A;  4IE2 A;  4HXQ A;  1T4R A;  1TBH A;  4IU5 A;  3TH7 A;  1HQX A;  4RHK A;  3GMZ A;  2PHA A;  2RLA A;  3NIP A;  1WOG A;  4MYN A;  3MFW A;  2AEB A;  2A0M A;  4Q3S A;  4RHI A;  3E6K A;  4FCK A;  3DJ8 A;  1T4T A;  1RLA A;  1P8R A;  1HQG A;  4RLA A;  1P8O A;  3LP7 A;  4RHL A;  4MYK A;  1HQF A;  3NIO A;  2PHO A;  4GWD A;  4IXU A;  2EF5 A;  3LP4 A;  3F80 A;  5CEV A;  1T4P A;  4Q40 A;  3THH A;  1WOI A;  3PZL A;  1CEV A;  3MJL A;  3THE A;  2EIV A;  1PQ3 A;  3MMR A;  4DZ4 A;  4RHQ A;  4I06 A;  1WOH A;  4ITY A;  3SKK A;  3TF3 A;  1T5G A;  4IE1 A;  4HZE A;  2CEV A;  4HWW A;  1ZPG A;  2ZAV A;  4MXR A;  3E8Z A;  1HQ5 A;  3KV2 A;  1TBL A;  4Q3R C;  4GSV A;  4Q3T A;  3E6V A;  3LHL A;  4IE3 A;  4MYF A;  5HJ9 A;  4IXV A;  1D3V A;  5HJA A;  4Q41 A;  4Q3P A;  1HQH A;  3M1R A;  3GN0 A;  5RLA A;  1T5F A;  2EF4 A;  1P8M A;  4IU1 A;  3MFV A;  4IU4 A;  3NIQ A;  4FCI A;  1TBJ A;  4Q3R A;  4G3H A;  4Q3Q A;  1P8Q A;  3RLA A;  3SJT A;  4GWC A;  4GSM A;  1T4S A;  3THJ A;  1XFK A;  1WVB A;  3SL0 A;  2PLL A;  4RHJ A;  4GSZ A;  1P8P A;  3CEV A; 
#chains in the Genus database with same CATH topology
 1WVA A;  1W22 A;  5G1C A;  4Q3V A;  5LI3 A;  4RHM A;  5D1C A;  3SL1 A;  4Q3U A;  3E8Q A;  5FUE A;  5EFJ D;  1ZPE A;  3E9B A;  1GQ6 A;  5EEK A;  4CEV A;  5D1B A;  4IU0 A;  4Q42 A;  2V5W A;  1P8N A;  1P8S A;  1TA1 A;  1GQ7 A;  1R1O A;  3Q9E A;  4MYL A;  2VQJ A;  4IE2 A;  4HXQ A;  1T4R A;  1TBH A;  3Q9B A;  4IU5 A;  1C3S A;  3MZ3 A;  5DC5 A;  3EWF A;  3TH7 A;  5ICN B;  1HQX A;  4BZ6 A;  4QA4 A;  4RHK A;  3GMZ A;  2PHA A;  2RLA A;  3NIP A;  1WOG A;  4MYN A;  3MFW A;  2GH6 A;  2AEB A;  2A0M A;  4Q3S A;  4QA3 A;  3C0Z A;  3E6K A;  4FCK A;  4RHI A;  4ZUO A;  3MAX A;  4LY1 A;  4BKX B;  5EF7 A;  1C3P A;  3DJ8 A;  3C0Y A;  1T4T A;  1RLA A;  1T64 A;  1P8R A;  4QA7 A;  3C10 A;  4ZUN A;  1HQG A;  4RLA A;  1P8O A;  3LP7 A;  4RHL A;  4MYK A;  3F06 A;  1HQF A;  5G1B A;  5G3W A;  3NIO A;  2PHO A;  4GWD A;  4CQF A;  5THU A;  4IXU A;  2EF5 A;  4A69 A;  3LP4 A;  3F80 A;  1VKG A;  5EEF A;  1T4P A;  4Q40 A;  4ZUR A;  5G12 A;  3THH A;  5CEV A;  1WOI A;  5EEN A;  3PZL A;  1CEV A;  3MJL A;  2VCG A;  3EZP A;  2VQQ A;  2EIV A;  3THE A;  4RN1 A;  1PQ3 A;  3MMR A;  3EZT A;  3RQD A;  5EEM A;  4DZ4 A;  5EFH A;  5EFB D;  4RHQ A;  3MEN A;  4I06 A;  5EFN A;  1WOH A;  5EEI A;  4ITY A;  4LXZ A;  5FCW A;  5IWG A;  3SKK A;  3F07 A;  4BZ5 A;  3TF3 A;  5G13 A;  5BWZ A;  1T67 A;  1T5G A;  2V5X A;  5G1A A;  3ZNS A;  4IE1 A;  4HZE A;  2CEV A;  5G10 A;  5A2S A;  1ZZ0 A;  4HWW A;  5THT A;  3Q9C A;  5DC7 A;  5G0J A;  1ZPG A;  2ZAV A;  5G0H A;  4QA5 A;  4MXR A;  5G17 A;  3E8Z A;  1HQ5 A;  3KV2 A;  4CBT A;  4QA2 A;  1T69 A;  4BZ8 A;  1TBL A;  4BZ9 A;  4Q3R C;  4GSV A;  4Q3T A;  4ZUP A;  5G0X A;  5IX0 A;  3E6V A;  3LHL A;  4RN0 A;  2VQV A;  4BZ7 A;  4IE3 A;  4MYF A;  5HJ9 A;  4IXV A;  3SFH A;  3MZ6 A;  1D3V A;  5G0I A;  5EF8 A;  5HJA A;  5EFK B;  4Q3P A;  4Q41 A;  4ZUQ A;  1HQH A;  3M1R A;  3GN0 A;  5RLA A;  5G0Y A;  4CBY A;  5THS A;  1T5F A;  5D1D A;  4ZUM A;  4RN2 A;  3MZ7 A;  2EF4 A;  5EFG A;  1P8M A;  4IU1 A;  1ZZ1 A;  1ZZ3 A;  2VQO A;  3MFV A;  4QA6 A;  4IU4 A;  3NIQ A;  4QA1 A;  3ZNR A;  4FCI A;  1TBJ A;  4Q3R A;  4G3H A;  4Q3Q A;  2VQW G;  2VQM A;  4QA0 A;  1P8Q A;  3RLA A;  5G11 A;  3SFF A;  3SJT A;  3EW8 A;  4GWC A;  4GSM A;  1T4S A;  3Q9F A;  1XFK A;  3THJ A;  5JI5 A;  1WVB A;  5THV A;  3SL0 A;  2PLL A;  1C3R A;  3F0R A;  4RHJ A;  4GSZ A;  5DC6 A;  1P8P A;  5DC8 A;  3CEV A;  3MZ4 A;  5G0G A; 
#chains in the Genus database with same CATH homology
 1WVA A;  4Q3V A;  4RHM A;  3SL1 A;  4Q3U A;  3E8Q A;  1ZPE A;  3E9B A;  1GQ6 A;  4CEV A;  4IU0 A;  4Q42 A;  1P8N A;  1P8S A;  1TA1 A;  1GQ7 A;  1R1O A;  4MYL A;  4IE2 A;  4HXQ A;  1T4R A;  1TBH A;  4IU5 A;  3TH7 A;  1HQX A;  4RHK A;  3GMZ A;  2PHA A;  2RLA A;  3NIP A;  1WOG A;  4MYN A;  3MFW A;  2AEB A;  2A0M A;  4Q3S A;  4RHI A;  3E6K A;  4FCK A;  3DJ8 A;  1T4T A;  1RLA A;  1P8R A;  1HQG A;  4RLA A;  1P8O A;  3LP7 A;  4RHL A;  4MYK A;  1HQF A;  3NIO A;  2PHO A;  4GWD A;  4IXU A;  2EF5 A;  3LP4 A;  3F80 A;  5CEV A;  1T4P A;  4Q40 A;  3THH A;  1WOI A;  3PZL A;  1CEV A;  3MJL A;  3THE A;  2EIV A;  1PQ3 A;  3MMR A;  4DZ4 A;  4RHQ A;  4I06 A;  1WOH A;  4ITY A;  3SKK A;  3TF3 A;  1T5G A;  4IE1 A;  4HZE A;  2CEV A;  4HWW A;  1ZPG A;  2ZAV A;  4MXR A;  3E8Z A;  1HQ5 A;  3KV2 A;  1TBL A;  4Q3R C;  4GSV A;  4Q3T A;  3E6V A;  3LHL A;  4IE3 A;  4MYF A;  5HJ9 A;  4IXV A;  1D3V A;  5HJA A;  4Q41 A;  4Q3P A;  1HQH A;  3M1R A;  3GN0 A;  5RLA A;  1T5F A;  2EF4 A;  1P8M A;  4IU1 A;  3MFV A;  4IU4 A;  3NIQ A;  4FCI A;  1TBJ A;  4Q3R A;  4G3H A;  4Q3Q A;  1P8Q A;  3RLA A;  3SJT A;  4GWC A;  4GSM A;  1T4S A;  3THJ A;  1XFK A;  1WVB A;  3SL0 A;  2PLL A;  4RHJ A;  4GSZ A;  1P8P A;  3CEV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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