3Q20A

Crystal structure of rbcx c103a mutant from thermosynechococcus elongatus
Total Genus 49
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
49
sequence length
114
structure length
114
Chain Sequence
MDVKHIAKQTTKTLISYLTYQAVRTVIGQLAETDPPRSLWLHQFTSQESIQDGERYLEALFREQPDLGFRILTVREHLAEMVADYLPEMLRAGIQQANLQQRAQQLERMTQVSE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Chaperone
molecule keywords RbcX protein
publication title Structure of the RuBisCO chaperone RbcX from the thermophilic cyanobacterium Thermosynechococcus elongatus
pubmed doi rcsb
source organism Thermosynechococcus elongatus
total genus 49
structure length 114
sequence length 114
chains with identical sequence B
ec nomenclature
pdb deposition date 2010-12-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02341 RcbX RbcX protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.210 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A 3q20A00
2PEOA 2PY8A 5BS1A 2PENA 2PEMA 3Q20A 2PEIA 2Z46A 2PEQA 2PEKA 3RG6C 4GR2A 4GR6A 2PEJA 3HYBA 5BS2A 2Z45A 2Z44A
chains in the Genus database with same CATH superfamily
2K92A 4H2XC 3HZQA 2KG9A 2L9FA 2DNWA 2PENA 2AVAA 1VQKP 2LF4A 3DS0A 2N98A 5HGLA 3CCSP 2GZIA 1AUMA 4HKGA 2P9XA 2N5IA 4U0EA 1Q86Q 2GDYA 2K0DX 5I4TG 5KP8B 2XV6A 2CG5B 2LTEA 1QVFO 2OTJP 1EIAA 1DV5A 1NJIQ 3CC4P 4QKOA 1S72P 1GXGA 3G26A 1EMVA 1M6NA 5F2OA 4MRTC 2Z45A 3CCQP 5HVCA 1L0HA 2CGQA 1VQNP 2KGCA 3CC2P 4PH0A 3DS1A 3G1IA 2GZFA 2K2QA 2M8NA 2VSQA 7CEIA 2L4BA 1VQMP 3DS3A 1X3OA 4WYMA 4F37A 3VRLC 1KQSO 5DCKA 1Q82Q 1K73Q 2LIWA 2MVVA 1IUQA 3NTEA 2MR7A 2N6YA 3GJNA 2KGDA 2AF8A 2FAEA 3LRYA 2ERHA 2QA4P 5F2KA 3CCEP 1Q7YQ 2VLQA 4UHPB 1ZNVA 2CNRA 3G6EP 2PEOA 3G29A 1OR5A 5JPAA 2N50A 2PEIA 1JJ2O 2BHVA 5BS1A 1UJZA 2GZEA 4U0CA 2FHSC 4U0AA 2VLNA 2LOLA 3G1GA 2MD9A 4DG9A 1YJ9P 2EIAA 1CEIA 2M8PA 2EHTA 1A8OA 3CD6P 3CCUP 3G4SP 3CCVP 2LMLA 1GPJA 2VLOA 1VQOP 1UNKA 1Z6MA 2JGPA 5HGOA 2QNWA 1VQ9P 2Z44A 3NY7B 4H2YC 4M0IA 2JYLA 3I56P 3CPWO 3DS5A 1BXIA 4XROA 3CCMP 1M1KQ 3G0VA 2JB0A 1VKUA 2FACA 3MGEA 2JU1A 1YHQP 1VQ5P 3CE7A 4CA3A 2K0XA 4XRQA 1KLPA 5KP6B 3DS2A 2JQ4A 1K30A 3M1MA 2GYKA 2PEMA 2JO0A 3CMEP 2FVAA 1K9MQ 2MF4A 3H47A 1FR2A 2MR8A 1VQ6P 3I55P 2XT1A 1M90Q 3G71P 2KOQA 2DGYA 2FADA 3RG2A 1E0HA 3CC7P 2GZGA 2KGEA 2MY5A 2VLPA 2JYGA 3DTJA 1E6JP 2JU2A 3DS4A 2PEQA 1YJWP 3WBHA 2L0QA 3Q20A 2JBGA 3CCJP 1L0IA 1IMQA 1N8RQ 4XFYA 1D1DA 1K8AQ 2KOPA 2OTLP 1RO2A 2EFJA 2FVEA 1NQ4A 1IMPA 4IZ6A 1AYIA 2KOOA 2ROQA 2FQ0A 4COCA 3GZLA 2KORA 2M5RA 1A43A 2AFEA 3B4QA 2LIUA 1RO0A 2GDXA 3OW2O 3CMAP 2KOSA 4H2WC 2XZ0D 2PY8A 2ONTA 1YJNP 4PXHB 2N6ZA 4R0MA 1AF8A 5HGNA 3DPHA 2MVUA 1M74A 2L22A 1VQ4P 4IPYA 4PWVB 4COPA 1ZMBA 1EOQA 4U0DA 3H4EA 2JAZA 2GDWA 2K5XA 1DNYA 2LKIA 3LMOA 1ACPA 4BPHA 1YI2P 3GKLC 4GR2A 2N5HA 2K94A 2QEXP 2PEKA 3EJDA 1VQ7P 2L6EA 2K0YA 2KG8A 1MZ8A 2CWOA 2E1MA 1VQLP 2AFDA 4XFXA 1RNIA 2PEJA 2XZ1C 3G21A 5EJDA 3G28A 4XFZA 4BPFA 2NO8A 1M6EX 2OARA 2X2BA 1HY8A 2KG6A 2KODA 1KD1Q 2K93A 3RG6C 2WPTA 4QNBA 2KWLA 1BAJA 5F2NA 1VQ8P 2LL8A 2XXMA 1Q81Q 5CZDB 3HYBA 1T8KA 2GZJA 2M8LA 3CCLP 2KW2A 1HQBA 3CCRP 1QVGO 3U43A 2Z46A 3EJEA 5KP7B 2KGAA 1F80D 2BUOA 4GR6A 3P05A 2PNGA 1VQPP 2FQ2A 4PH1A 3CXCO 4U0FA 1YIJP 4U0BA 3GZMA 3E2DA 1KC8Q 2EHSA 2FQ1A 5EW5E 1GXHA 2LPKA 1YITP 1QRJA 2FVFA 2KR5A 1VHNA 2CQ8A 3H0DA 3B5IA 4NEOA 5BS2A 3EJBA 5HV8A 4BPGA 2EG5A 1W2BO 5HGMA
chains in the Genus database with same CATH topology
2PEOA 3G29A 5JPAA 3CC7P 2PEIA 2QEXP 2PEKA 1JJ2O 2BHVA 5BS1A 3HZQA 1VQ7P 2JYGA 3DTJA 2PENA 1E6JP 2L6EA 1VQKP 3DS4A 4U0CA 2PEQA 1YJWP 3WBHA 3Q20A 2CWOA 2LF4A 3DS0A 2E1MA 5HGLA 1VQLP 3CCSP 4U0AA 1AUMA 1RNIA 4XFXA 2P9XA 3CCJP 2PEJA 4U0EA 3G1GA 3G21A 1Q86Q 3G28A 4XFZA 1YJ9P 2EIAA 2OARA 1M6EX 1N8RQ 5I4TG 4XFYA 2M8PA 1A8OA 2XV6A 2KODA 1KD1Q 3CCUP 3G4SP 3CD6P 3RG6C 1D1DA 3CCVP 1QVFO 2OTJP 1EIAA 1K8AQ 1NJIQ 2OTLP 3CC4P 4QNBA 1VQOP 1RO2A 1S72P 1BAJA 5F2NA 2EFJA 1VQ8P 5HGOA 3G26A 1M6NA 5F2OA 1VQ9P 2XXMA 2Z45A 2Z44A 3CCQP 1Q81Q 4M0IA 1VQNP 4COCA 2JYLA 3HYBA 3I56P 3CPWO 3CC2P 3DS5A 2M8LA 3CCLP 4XROA 4PH0A 1A43A 3DS1A 3CCMP 1M1KQ 3G0VA 3G1IA 3CCRP 2M8NA 1QVGO 3MGEA 1RO0A 3OW2O 2Z46A 3CMAP 1YHQP 1VQ5P 2PY8A 2ONTA 1YJNP 4XRQA 1VQMP 3DS3A 2BUOA 3DS2A 4GR6A 1K30A 3M1MA 3P05A 4WYMA 1VQPP 3VRLC 2PEMA 2JO0A 3CMEP 1KQSO 4PH1A 5DCKA 5HGNA 3CXCO 1Q82Q 3DPHA 4U0FA 1M74A 1YIJP 1K73Q 1VQ4P 4IPYA 4U0BA 1K9MQ 3E2DA 1IUQA 3NTEA 3H47A 1KC8Q 4COPA 1VQ6P 1ZMBA 1EOQA 4U0DA 3I55P 2XT1A 3H4EA 1YITP 1M90Q 1QRJA 3G71P 3LRYA 3H0DA 3B5IA 5BS2A 2QA4P 5F2KA 3CCEP 2DGYA 2EG5A 1YI2P 1W2BO 1Q7YQ 4GR2A 5HGMA 3G6EP
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PEO A;  2PY8 A;  5BS1 A;  2PEN A;  2PEM A;  3Q20 A;  2PEI A;  2Z46 A;  2PEQ A;  2PEK A;  3RG6 C;  4GR2 A;  4GR6 A;  2PEJ A;  3HYB A;  5BS2 A;  2Z45 A;  2Z44 A; 
#chains in the Genus database with same CATH topology
 2K92 A;  4H2X C;  3HZQ A;  2KG9 A;  2L9F A;  2DNW A;  2PEN A;  2AVA A;  1VQK P;  2LF4 A;  3DS0 A;  2N98 A;  5HGL A;  3CCS P;  2GZI A;  1AUM A;  4HKG A;  2P9X A;  2N5I A;  4U0E A;  1Q86 Q;  2GDY A;  2K0D X;  5I4T G;  5KP8 B;  2XV6 A;  2CG5 B;  2LTE A;  1QVF O;  2OTJ P;  1EIA A;  1DV5 A;  1NJI Q;  3CC4 P;  4QKO A;  1S72 P;  1GXG A;  3G26 A;  1EMV A;  1M6N A;  5F2O A;  4MRT C;  2Z45 A;  3CCQ P;  5HVC A;  1L0H A;  2CGQ A;  1VQN P;  2KGC A;  3CC2 P;  4PH0 A;  3DS1 A;  3G1I A;  2GZF A;  2K2Q A;  2M8N A;  2VSQ A;  7CEI A;  2L4B A;  1VQM P;  3DS3 A;  1X3O A;  4WYM A;  4F37 A;  3VRL C;  1KQS O;  5DCK A;  1Q82 Q;  1K73 Q;  2LIW A;  2MVV A;  1IUQ A;  3NTE A;  2MR7 A;  2N6Y A;  3GJN A;  2KGD A;  2AF8 A;  2FAE A;  3LRY A;  2ERH A;  2QA4 P;  5F2K A;  3CCE P;  1Q7Y Q;  2VLQ A;  4UHP B;  1ZNV A;  2CNR A;  3G6E P;  2PEO A;  3G29 A;  1OR5 A;  5JPA A;  2N50 A;  2PEI A;  1JJ2 O;  2BHV A;  5BS1 A;  1UJZ A;  2GZE A;  4U0C A;  2FHS C;  4U0A A;  2VLN A;  2LOL A;  3G1G A;  2MD9 A;  4DG9 A;  1YJ9 P;  2EIA A;  1CEI A;  2M8P A;  2EHT A;  1A8O A;  3CD6 P;  3CCU P;  3G4S P;  3CCV P;  2LML A;  1GPJ A;  2VLO A;  1VQO P;  1UNK A;  1Z6M A;  2JGP A;  5HGO A;  2QNW A;  1VQ9 P;  2Z44 A;  3NY7 B;  4H2Y C;  4M0I A;  2JYL A;  3I56 P;  3CPW O;  3DS5 A;  1BXI A;  4XRO A;  3CCM P;  1M1K Q;  3G0V A;  2JB0 A;  1VKU A;  2FAC A;  3MGE A;  2JU1 A;  1YHQ P;  1VQ5 P;  3CE7 A;  4CA3 A;  2K0X A;  4XRQ A;  1KLP A;  5KP6 B;  3DS2 A;  2JQ4 A;  1K30 A;  3M1M A;  2GYK A;  2PEM A;  2JO0 A;  3CME P;  2FVA A;  1K9M Q;  2MF4 A;  3H47 A;  1FR2 A;  2MR8 A;  1VQ6 P;  3I55 P;  2XT1 A;  1M90 Q;  3G71 P;  2KOQ A;  2DGY A;  2FAD A;  3RG2 A;  1E0H A;  3CC7 P;  2GZG A;  2KGE A;  2MY5 A;  2VLP A;  2JYG A;  3DTJ A;  1E6J P;  2JU2 A;  3DS4 A;  2PEQ A;  1YJW P;  3WBH A;  2L0Q A;  3Q20 A;  2JBG A;  3CCJ P;  1L0I A;  1IMQ A;  1N8R Q;  4XFY A;  1D1D A;  1K8A Q;  2KOP A;  2OTL P;  1RO2 A;  2EFJ A;  2FVE A;  1NQ4 A;  1IMP A;  4IZ6 A;  1AYI A;  2KOO A;  2ROQ A;  2FQ0 A;  4COC A;  3GZL A;  2KOR A;  2M5R A;  1A43 A;  2AFE A;  3B4Q A;  2LIU A;  1RO0 A;  2GDX A;  3OW2 O;  3CMA P;  2KOS A;  4H2W C;  2XZ0 D;  2PY8 A;  2ONT A;  1YJN P;  4PXH B;  2N6Z A;  4R0M A;  1AF8 A;  5HGN A;  3DPH A;  2MVU A;  1M74 A;  2L22 A;  1VQ4 P;  4IPY A;  4PWV B;  4COP A;  1ZMB A;  1EOQ A;  4U0D A;  3H4E A;  2JAZ A;  2GDW A;  2K5X A;  1DNY A;  2LKI A;  3LMO A;  1ACP A;  4BPH A;  1YI2 P;  3GKL C;  4GR2 A;  2N5H A;  2K94 A;  2QEX P;  2PEK A;  3EJD A;  1VQ7 P;  2L6E A;  2K0Y A;  2KG8 A;  1MZ8 A;  2CWO A;  2E1M A;  1VQL P;  2AFD A;  4XFX A;  1RNI A;  2PEJ A;  2XZ1 C;  3G21 A;  5EJD A;  3G28 A;  4XFZ A;  4BPF A;  2NO8 A;  1M6E X;  2OAR A;  2X2B A;  1HY8 A;  2KG6 A;  2KOD A;  1KD1 Q;  2K93 A;  3RG6 C;  2WPT A;  4QNB A;  2KWL A;  1BAJ A;  5F2N A;  1VQ8 P;  2LL8 A;  2XXM A;  1Q81 Q;  5CZD B;  3HYB A;  1T8K A;  2GZJ A;  2M8L A;  3CCL P;  2KW2 A;  1HQB A;  3CCR P;  1QVG O;  3U43 A;  2Z46 A;  3EJE A;  5KP7 B;  2KGA A;  1F80 D;  2BUO A;  4GR6 A;  3P05 A;  2PNG A;  1VQP P;  2FQ2 A;  4PH1 A;  3CXC O;  4U0F A;  1YIJ P;  4U0B A;  3GZM A;  3E2D A;  1KC8 Q;  2EHS A;  2FQ1 A;  5EW5 E;  1GXH A;  2LPK A;  1YIT P;  1QRJ A;  2FVF A;  2KR5 A;  1VHN A;  2CQ8 A;  3H0D A;  3B5I A;  4NEO A;  5BS2 A;  3EJB A;  5HV8 A;  4BPG A;  2EG5 A;  1W2B O;  5HGM A; 
#chains in the Genus database with same CATH homology
 2PEO A;  3G29 A;  5JPA A;  3CC7 P;  2PEI A;  2QEX P;  2PEK A;  1JJ2 O;  2BHV A;  5BS1 A;  3HZQ A;  1VQ7 P;  2JYG A;  3DTJ A;  2PEN A;  1E6J P;  2L6E A;  1VQK P;  3DS4 A;  4U0C A;  2PEQ A;  1YJW P;  3WBH A;  3Q20 A;  2CWO A;  2LF4 A;  3DS0 A;  2E1M A;  5HGL A;  1VQL P;  3CCS P;  4U0A A;  1AUM A;  1RNI A;  4XFX A;  2P9X A;  3CCJ P;  2PEJ A;  4U0E A;  3G1G A;  3G21 A;  1Q86 Q;  3G28 A;  4XFZ A;  1YJ9 P;  2EIA A;  2OAR A;  1M6E X;  1N8R Q;  5I4T G;  4XFY A;  2M8P A;  1A8O A;  2XV6 A;  2KOD A;  1KD1 Q;  3CCU P;  3G4S P;  3CD6 P;  3RG6 C;  1D1D A;  3CCV P;  1QVF O;  2OTJ P;  1EIA A;  1K8A Q;  1NJI Q;  2OTL P;  3CC4 P;  4QNB A;  1VQO P;  1RO2 A;  1S72 P;  1BAJ A;  5F2N A;  2EFJ A;  1VQ8 P;  5HGO A;  3G26 A;  1M6N A;  5F2O A;  1VQ9 P;  2XXM A;  2Z45 A;  2Z44 A;  3CCQ P;  1Q81 Q;  4M0I A;  1VQN P;  4COC A;  2JYL A;  3HYB A;  3I56 P;  3CPW O;  3CC2 P;  3DS5 A;  2M8L A;  3CCL P;  4XRO A;  4PH0 A;  1A43 A;  3DS1 A;  3CCM P;  1M1K Q;  3G0V A;  3G1I A;  3CCR P;  2M8N A;  1QVG O;  3MGE A;  1RO0 A;  3OW2 O;  2Z46 A;  3CMA P;  1YHQ P;  1VQ5 P;  2PY8 A;  2ONT A;  1YJN P;  4XRQ A;  1VQM P;  3DS3 A;  2BUO A;  3DS2 A;  4GR6 A;  1K30 A;  3M1M A;  3P05 A;  4WYM A;  1VQP P;  3VRL C;  2PEM A;  2JO0 A;  3CME P;  1KQS O;  4PH1 A;  5DCK A;  5HGN A;  3CXC O;  1Q82 Q;  3DPH A;  4U0F A;  1M74 A;  1YIJ P;  1K73 Q;  1VQ4 P;  4IPY A;  4U0B A;  1K9M Q;  3E2D A;  1IUQ A;  3NTE A;  3H47 A;  1KC8 Q;  4COP A;  1VQ6 P;  1ZMB A;  1EOQ A;  4U0D A;  3I55 P;  2XT1 A;  3H4E A;  1YIT P;  1M90 Q;  1QRJ A;  3G71 P;  3LRY A;  3H0D A;  3B5I A;  5BS2 A;  2QA4 P;  5F2K A;  3CCE P;  2DGY A;  2EG5 A;  1YI2 P;  1W2B O;  1Q7Y Q;  4GR2 A;  5HGM A;  3G6E P; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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