3QC8A

Crystal structure of faf1 ubx domain in complex with p97/vcp n domain reveals the conserved fcisp touch-turn motif of ubx domain suffering conformational change
Total Genus 48
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
48
sequence length
170
structure length
170
Chain Sequence
PNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKRE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein binding
molecule keywords Transitional endoplasmic reticulum ATPase
publication title Crystal structure of FAF1 UBX domain in complex with p97/VCP N domain reveals a conformational change in the conserved FcisP touch-turn motif of UBX domain
pubmed doi rcsb
source organism Homo sapiens
total genus 48
structure length 170
sequence length 170
ec nomenclature ec 3.6.4.6: Vesicle-fusing ATPase.
pdb deposition date 2011-01-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02359 CDC48_N Cell division protein 48 (CDC48), N-terminal domain
A PF02933 CDC48_2 Cell division protein 48 (CDC48), domain 2
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 3qc8A01
3.10.330.10 Alpha Beta Roll Vcp-like ATPase; Chain A, domain 2 Vcp-like ATPase; Chain A, domain 2 3qc8A02
2WB1A 2R92A 2VPZA 2WAQA 2IV2X 2VPWA 1E61A 1FDOA 1PT0A 2NVYA 1ZC1A 3HKZA 1YLEA 1DMSA 1FDIA 1TWAA 2JIQA 2KI8A 3GTOA 4AOKB 3O5AA 4QIWA 5FTKA 4CRZA 3IR5A 3IR6A 1H0HA 1TMOA 2EEOB 3GTKA 5FTNA 2R93A 1TWCA 3HU2A 1UHEA 1AA6A 1Y1WA 1Y1VA 4AZDA 3DMRA 1VC3B 3QQ7A 3TM7B 1I50A 2VPYA 1CR5A 3CF2A 1DMRA 1G8KA 4KLNA 5GLFA 4CS0A 2R7ZA 5T5ID 3QWZA 1PQFA 3GTPA 1PYQA 1K83A 5FTJA 3GTLA 1E60A 2JA7A 1QDNA 2E7ZA 1R9TA 1TWHA 3HU3A 3GTGA 4CRYG 1OGYA 3ML1A 1PYUB 4KDIA 1WLFA 3QC8A 2JV2A 1PT1A 4GA5A 1SFOA 2B63A 2NYAA 1PQHA 4C2MA 1IW7D 3OUGA 5FTLA 1AW8B 4KDLA 1PPYA 2YUJA 3FKIA 5EPPA 1KQFA 1TWFA 2JIPA 2JIRA 1E32A 2C45A 1I3QA 4AAYA 1G8JA 4KO8A 1PQEA 5FTMA 2Y0SA 4AONB 4DMRA 4GA6A 5T5MD 3GTQA 5DYGA 1QCSA 1CZ4A 1EU1A 4RV0A 2JA5A 5C18A 1H5NA 1Q16A 2PJHB 3HU1A 3QQ8A 2JA6A 3TIWA 1R27A 2E2HA 1Y4ZA 3PLXB 2DMRA 4KODA 4AYBA 4D7ZB 2YU9A 2V3VA 5DYIA 1KQGA 3IR7A 5C1BA 2PMZA 5B6CA 1Y5IA 3GTMA 2JIOA 1SIWA 2JIMA 2E2IA 1WCMA 1UHDA 1TWGA 3CQZA 1R7RA 2NAPA 2VPXA 1E18A 2NVXA 2VUMA 1CZ5A 3GTJA 2V45A 3H0GA 1E5VA 1S3SA
chains in the Genus database with same CATH superfamily
2WB1A 2R92A 2VPZA 2WAQA 2IV2X 3X2KA 2VPWA 1E61A 1FDOA 1PT0A 2A69D 2NVYA 4NOHA 2GF7A 2KY9A 1ZC1A 4FERA 3HKZA 5D6XA 3X2LA 1YLEA 1DMSA 1WC2A 1FDIA 3FPRA 1YNJD 1TWAA 1BW4A 2JIQA 2KI8A 3GTOA 4AOKB 3O5AA 2PI8A 4QIWA 5FTKA 4CRZA 2G5DA 4FFTA 3MB5A 1L8FA 1OA7A 2QQRA 3IR5A 3IR6A 1H0HA 1TMOA 2EEOB 3GTKA 5FTNA 2R93A 1TWCA 3HU2A 4AVRA 1UHEA 1AA6A 1Y1WA 1Y1VA 4AZDA 2KQAA 4ARCA 2B25A 3DMRA 1VC3B 3QQ7A 3TM7B 1I50A 2MM0A 2AE0X 2VPYA 1CR5A 3CF2A 1DMRA 1G8KA 4KLNA 5GLFA 3SUKA 4CS0A 2R7ZA 2Q1AX 3SULA 5T5ID 4FG4A 3QWZA 1PQFA 3GTPA 5CCXA 1PYQA 4FIBA 1K83A 5FTJA 1I9GA 3GTLA 5EQJB 3LHDA 2PJJA 1E60A 2JA7A 1QDNA 3X2JA 2Q1DX 2E7ZA 1R9TA 1TWHA 3HU3A 3GTGA 2QQSA 2YVLA 4CRYG 1OGYA 3ML1A 1PYUB 4KDIA 4ENGA 5CCBA 2Q19X 1WLFA 3QC8A 2JV2A 1PT1A 3SUJA 4GA5A 1SFOA 2G6GA 2B63A 2NYAA 1PQHA 4C2MA 1IW7D 3OUGA 3X2HA 5FTLA 1AW8B 4KDLA 2XDPA 1PPYA 2YUJA 2GFAA 3FKIA 5EPPA 1KQFA 5CD1A 1N10A 3SUMA 2A6ED 1OA9A 1TWFA 2MM2A 3ZJVA 2JIPA 2JIRA 1E32A 2C45A 2CW0D 3M3GA 1SMYD 5H4UA 4CQNA 2PICA 3LGAA 2PNWA 1I3QA 4AAYA 1HD5A 1G8JA 4KO8A 5ERGB 1ZYRD 3X2IA 1PQEA 5FTMA 2Y0SA 4AONB 3ZGZA 3ENGA 3X2PA 2Q1CX 4JJOA 5GLXA 4DMRA 4GA6A 5T5MD 2O5JD 3FPTA 3GTQA 5DYGA 1QCSA 1CZ4A 1EU1A 4RV0A 5D6YA 2BE5D 2LW6A 3ZJUA 2JA5A 5C18A 1H5NA 1Q16A 4JP7A 4UC4A 4ARIA 2PJHB 3HU1A 3QQ8A 2BH0A 2JA6A 4L48A 2HCZX 3TIWA 2Q18X 1R27A 2ENGA 4JCWA 1Y4ZA 3X2OA 2E2HA 3PLXB 3FPUA 2DMRA 4KODA 4AYBA 3D30A 4D7ZB 2V3VA 4ZM7A 5DYIA 2YU9A 3ZJTA 1KQGA 1BW3A 4JS7A 2PWYA 3IR7A 5C1BA 2PMZA 5B6CA 1Y5IA 3CZBA 3GTMA 2JIOA 1SIWA 2A68D 2GAEA 2JIMA 3X2GA 2E2IA 4AS1A 1WCMA 5GM9A 1UHDA 4AQ7A 1TWGA 3CQZA 1R7RA 2NAPA 5GLYA 2VPXA 3X2NA 1E18A 3BQBA 5D6WA 2NVXA 2VUMA 1YNND 1CZ5A 2A6HD 3GTJA 2V45A 1O54A 4JP6A 3H0GA 1E5VA 4FG2A 1S3SA 3X2MA
chains in the Genus database with same CATH topology
2WB1A 2R92A 2VPZA 2WAQA 2IV2X 2VPWA 1E61A 1FDOA 1PT0A 2A69D 2NVYA 4NOHA 2GF7A 2KY9A 1ZC1A 3HKZA 5D6XA 1YLEA 1DMSA 1FDIA 3FPRA 1YNJD 1TWAA 2JIQA 2KI8A 3GTOA 4AOKB 3O5AA 2PI8A 4QIWA 5FTKA 4CRZA 2G5DA 3MB5A 2QQRA 3IR5A 3IR6A 1H0HA 1TMOA 2EEOB 3GTKA 5FTNA 2R93A 1TWCA 3HU2A 1UHEA 1AA6A 1Y1WA 1Y1VA 4AZDA 4ARCA 2B25A 3DMRA 1VC3B 3QQ7A 3TM7B 1I50A 2MM0A 2AE0X 2VPYA 1CR5A 3CF2A 1DMRA 1G8KA 4KLNA 5GLFA 4CS0A 2R7ZA 2Q1AX 5T5ID 3QWZA 1PQFA 3GTPA 5CCXA 1PYQA 4FIBA 1K83A 5FTJA 1I9GA 3GTLA 5EQJB 3LHDA 2PJJA 1E60A 2JA7A 1QDNA 2Q1DX 2E7ZA 1R9TA 1TWHA 3HU3A 3GTGA 2QQSA 2YVLA 4CRYG 1OGYA 3ML1A 1PYUB 4KDIA 5CCBA 2Q19X 1WLFA 3QC8A 2JV2A 1PT1A 4GA5A 1SFOA 2G6GA 2B63A 2NYAA 1PQHA 4C2MA 1IW7D 3OUGA 5FTLA 1AW8B 4KDLA 2XDPA 1PPYA 2YUJA 2GFAA 3FKIA 5EPPA 1KQFA 5CD1A 2A6ED 1TWFA 2MM2A 3ZJVA 2JIPA 2JIRA 1E32A 2C45A 2CW0D 1SMYD 4CQNA 2PICA 3LGAA 2PNWA 1I3QA 4AAYA 1G8JA 4KO8A 5ERGB 1ZYRD 1PQEA 5FTMA 2Y0SA 4AONB 3ZGZA 2Q1CX 4DMRA 4GA6A 5T5MD 2O5JD 3FPTA 3GTQA 5DYGA 1QCSA 1CZ4A 1EU1A 4RV0A 5D6YA 2BE5D 2LW6A 3ZJUA 2JA5A 5C18A 1H5NA 1Q16A 4UC4A 4ARIA 2PJHB 3HU1A 3QQ8A 2JA6A 3TIWA 2Q18X 1R27A 2E2HA 1Y4ZA 3FPUA 3PLXB 2DMRA 4KODA 4AYBA 4D7ZB 2YU9A 2V3VA 3ZJTA 5DYIA 1KQGA 2PWYA 3IR7A 5C1BA 2PMZA 5B6CA 1Y5IA 3CZBA 3GTMA 2JIOA 1SIWA 2A68D 2GAEA 2JIMA 2E2IA 4AS1A 1WCMA 4AQ7A 1UHDA 1TWGA 3CQZA 1R7RA 2NAPA 2VPXA 1E18A 3BQBA 5D6WA 2NVXA 2VUMA 1YNND 1CZ5A 2A6HD 3GTJA 2V45A 1O54A 3H0GA 1E5VA 1S3SA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2WB1 A;  2R92 A;  2VPZ A;  2WAQ A;  2IV2 X;  2VPW A;  1E61 A;  1FDO A;  1PT0 A;  2NVY A;  1ZC1 A;  3HKZ A;  1YLE A;  1DMS A;  1FDI A;  1TWA A;  2JIQ A;  2KI8 A;  3GTO A;  4AOK B;  3O5A A;  4QIW A;  5FTK A;  4CRZ A;  3IR5 A;  3IR6 A;  1H0H A;  1TMO A;  2EEO B;  3GTK A;  5FTN A;  2R93 A;  1TWC A;  3HU2 A;  1UHE A;  1AA6 A;  1Y1W A;  1Y1V A;  4AZD A;  3DMR A;  1VC3 B;  3QQ7 A;  3TM7 B;  1I50 A;  2VPY A;  1CR5 A;  3CF2 A;  1DMR A;  1G8K A;  4KLN A;  5GLF A;  4CS0 A;  2R7Z A;  5T5I D;  3QWZ A;  1PQF A;  3GTP A;  1PYQ A;  1K83 A;  5FTJ A;  3GTL A;  1E60 A;  2JA7 A;  1QDN A;  2E7Z A;  1R9T A;  1TWH A;  3HU3 A;  3GTG A;  4CRY G;  1OGY A;  3ML1 A;  1PYU B;  4KDI A;  1WLF A;  3QC8 A;  2JV2 A;  1PT1 A;  4GA5 A;  1SFO A;  2B63 A;  2NYA A;  1PQH A;  4C2M A;  1IW7 D;  3OUG A;  5FTL A;  1AW8 B;  4KDL A;  1PPY A;  2YUJ A;  3FKI A;  5EPP A;  1KQF A;  1TWF A;  2JIP A;  2JIR A;  1E32 A;  2C45 A;  1I3Q A;  4AAY A;  1G8J A;  4KO8 A;  1PQE A;  5FTM A;  2Y0S A;  4AON B;  4DMR A;  4GA6 A;  5T5M D;  3GTQ A;  5DYG A;  1QCS A;  1CZ4 A;  1EU1 A;  4RV0 A;  2JA5 A;  5C18 A;  1H5N A;  1Q16 A;  2PJH B;  3HU1 A;  3QQ8 A;  2JA6 A;  3TIW A;  1R27 A;  2E2H A;  1Y4Z A;  3PLX B;  2DMR A;  4KOD A;  4AYB A;  4D7Z B;  2YU9 A;  2V3V A;  5DYI A;  1KQG A;  3IR7 A;  5C1B A;  2PMZ A;  5B6C A;  1Y5I A;  3GTM A;  2JIO A;  1SIW A;  2JIM A;  2E2I A;  1WCM A;  1UHD A;  1TWG A;  3CQZ A;  1R7R A;  2NAP A;  2VPX A;  1E18 A;  2NVX A;  2VUM A;  1CZ5 A;  3GTJ A;  2V45 A;  3H0G A;  1E5V A;  1S3S A; 
#chains in the Genus database with same CATH topology
 2WB1 A;  2R92 A;  2VPZ A;  2WAQ A;  2IV2 X;  3X2K A;  2VPW A;  1E61 A;  1FDO A;  1PT0 A;  2A69 D;  2NVY A;  4NOH A;  2GF7 A;  2KY9 A;  1ZC1 A;  4FER A;  3HKZ A;  5D6X A;  3X2L A;  1YLE A;  1DMS A;  1WC2 A;  1FDI A;  3FPR A;  1YNJ D;  1TWA A;  1BW4 A;  2JIQ A;  2KI8 A;  3GTO A;  4AOK B;  3O5A A;  2PI8 A;  4QIW A;  5FTK A;  4CRZ A;  2G5D A;  4FFT A;  3MB5 A;  1L8F A;  1OA7 A;  2QQR A;  3IR5 A;  3IR6 A;  1H0H A;  1TMO A;  2EEO B;  3GTK A;  5FTN A;  2R93 A;  1TWC A;  3HU2 A;  4AVR A;  1UHE A;  1AA6 A;  1Y1W A;  1Y1V A;  4AZD A;  2KQA A;  4ARC A;  2B25 A;  3DMR A;  1VC3 B;  3QQ7 A;  3TM7 B;  1I50 A;  2MM0 A;  2AE0 X;  2VPY A;  1CR5 A;  3CF2 A;  1DMR A;  1G8K A;  4KLN A;  5GLF A;  3SUK A;  4CS0 A;  2R7Z A;  2Q1A X;  3SUL A;  5T5I D;  4FG4 A;  3QWZ A;  1PQF A;  3GTP A;  5CCX A;  1PYQ A;  4FIB A;  1K83 A;  5FTJ A;  1I9G A;  3GTL A;  5EQJ B;  3LHD A;  2PJJ A;  1E60 A;  2JA7 A;  1QDN A;  3X2J A;  2Q1D X;  2E7Z A;  1R9T A;  1TWH A;  3HU3 A;  3GTG A;  2QQS A;  2YVL A;  4CRY G;  1OGY A;  3ML1 A;  1PYU B;  4KDI A;  4ENG A;  5CCB A;  2Q19 X;  1WLF A;  3QC8 A;  2JV2 A;  1PT1 A;  3SUJ A;  4GA5 A;  1SFO A;  2G6G A;  2B63 A;  2NYA A;  1PQH A;  4C2M A;  1IW7 D;  3OUG A;  3X2H A;  5FTL A;  1AW8 B;  4KDL A;  2XDP A;  1PPY A;  2YUJ A;  2GFA A;  3FKI A;  5EPP A;  1KQF A;  5CD1 A;  1N10 A;  3SUM A;  2A6E D;  1OA9 A;  1TWF A;  2MM2 A;  3ZJV A;  2JIP A;  2JIR A;  1E32 A;  2C45 A;  2CW0 D;  3M3G A;  1SMY D;  5H4U A;  4CQN A;  2PIC A;  3LGA A;  2PNW A;  1I3Q A;  4AAY A;  1HD5 A;  1G8J A;  4KO8 A;  5ERG B;  1ZYR D;  3X2I A;  1PQE A;  5FTM A;  2Y0S A;  4AON B;  3ZGZ A;  3ENG A;  3X2P A;  2Q1C X;  4JJO A;  5GLX A;  4DMR A;  4GA6 A;  5T5M D;  2O5J D;  3FPT A;  3GTQ A;  5DYG A;  1QCS A;  1CZ4 A;  1EU1 A;  4RV0 A;  5D6Y A;  2BE5 D;  2LW6 A;  3ZJU A;  2JA5 A;  5C18 A;  1H5N A;  1Q16 A;  4JP7 A;  4UC4 A;  4ARI A;  2PJH B;  3HU1 A;  3QQ8 A;  2BH0 A;  2JA6 A;  4L48 A;  2HCZ X;  3TIW A;  2Q18 X;  1R27 A;  2ENG A;  4JCW A;  1Y4Z A;  3X2O A;  2E2H A;  3PLX B;  3FPU A;  2DMR A;  4KOD A;  4AYB A;  3D30 A;  4D7Z B;  2V3V A;  4ZM7 A;  5DYI A;  2YU9 A;  3ZJT A;  1KQG A;  1BW3 A;  4JS7 A;  2PWY A;  3IR7 A;  5C1B A;  2PMZ A;  5B6C A;  1Y5I A;  3CZB A;  3GTM A;  2JIO A;  1SIW A;  2A68 D;  2GAE A;  2JIM A;  3X2G A;  2E2I A;  4AS1 A;  1WCM A;  5GM9 A;  1UHD A;  4AQ7 A;  1TWG A;  3CQZ A;  1R7R A;  2NAP A;  5GLY A;  2VPX A;  3X2N A;  1E18 A;  3BQB A;  5D6W A;  2NVX A;  2VUM A;  1YNN D;  1CZ5 A;  2A6H D;  3GTJ A;  2V45 A;  1O54 A;  4JP6 A;  3H0G A;  1E5V A;  4FG2 A;  1S3S A;  3X2M A; 
#chains in the Genus database with same CATH homology
 2WB1 A;  2R92 A;  2VPZ A;  2WAQ A;  2IV2 X;  2VPW A;  1E61 A;  1FDO A;  1PT0 A;  2A69 D;  2NVY A;  4NOH A;  2GF7 A;  2KY9 A;  1ZC1 A;  3HKZ A;  5D6X A;  1YLE A;  1DMS A;  1FDI A;  3FPR A;  1YNJ D;  1TWA A;  2JIQ A;  2KI8 A;  3GTO A;  4AOK B;  3O5A A;  2PI8 A;  4QIW A;  5FTK A;  4CRZ A;  2G5D A;  3MB5 A;  2QQR A;  3IR5 A;  3IR6 A;  1H0H A;  1TMO A;  2EEO B;  3GTK A;  5FTN A;  2R93 A;  1TWC A;  3HU2 A;  1UHE A;  1AA6 A;  1Y1W A;  1Y1V A;  4AZD A;  4ARC A;  2B25 A;  3DMR A;  1VC3 B;  3QQ7 A;  3TM7 B;  1I50 A;  2MM0 A;  2AE0 X;  2VPY A;  1CR5 A;  3CF2 A;  1DMR A;  1G8K A;  4KLN A;  5GLF A;  4CS0 A;  2R7Z A;  2Q1A X;  5T5I D;  3QWZ A;  1PQF A;  3GTP A;  5CCX A;  1PYQ A;  4FIB A;  1K83 A;  5FTJ A;  1I9G A;  3GTL A;  5EQJ B;  3LHD A;  2PJJ A;  1E60 A;  2JA7 A;  1QDN A;  2Q1D X;  2E7Z A;  1R9T A;  1TWH A;  3HU3 A;  3GTG A;  2QQS A;  2YVL A;  4CRY G;  1OGY A;  3ML1 A;  1PYU B;  4KDI A;  5CCB A;  2Q19 X;  1WLF A;  3QC8 A;  2JV2 A;  1PT1 A;  4GA5 A;  1SFO A;  2G6G A;  2B63 A;  2NYA A;  1PQH A;  4C2M A;  1IW7 D;  3OUG A;  5FTL A;  1AW8 B;  4KDL A;  2XDP A;  1PPY A;  2YUJ A;  2GFA A;  3FKI A;  5EPP A;  1KQF A;  5CD1 A;  2A6E D;  1TWF A;  2MM2 A;  3ZJV A;  2JIP A;  2JIR A;  1E32 A;  2C45 A;  2CW0 D;  1SMY D;  4CQN A;  2PIC A;  3LGA A;  2PNW A;  1I3Q A;  4AAY A;  1G8J A;  4KO8 A;  5ERG B;  1ZYR D;  1PQE A;  5FTM A;  2Y0S A;  4AON B;  3ZGZ A;  2Q1C X;  4DMR A;  4GA6 A;  5T5M D;  2O5J D;  3FPT A;  3GTQ A;  5DYG A;  1QCS A;  1CZ4 A;  1EU1 A;  4RV0 A;  5D6Y A;  2BE5 D;  2LW6 A;  3ZJU A;  2JA5 A;  5C18 A;  1H5N A;  1Q16 A;  4UC4 A;  4ARI A;  2PJH B;  3HU1 A;  3QQ8 A;  2JA6 A;  3TIW A;  2Q18 X;  1R27 A;  2E2H A;  1Y4Z A;  3FPU A;  3PLX B;  2DMR A;  4KOD A;  4AYB A;  4D7Z B;  2YU9 A;  2V3V A;  3ZJT A;  5DYI A;  1KQG A;  2PWY A;  3IR7 A;  5C1B A;  2PMZ A;  5B6C A;  1Y5I A;  3CZB A;  3GTM A;  2JIO A;  1SIW A;  2A68 D;  2GAE A;  2JIM A;  2E2I A;  4AS1 A;  1WCM A;  4AQ7 A;  1UHD A;  1TWG A;  3CQZ A;  1R7R A;  2NAP A;  2VPX A;  1E18 A;  3BQB A;  5D6W A;  2NVX A;  2VUM A;  1YNN D;  1CZ5 A;  2A6H D;  3GTJ A;  2V45 A;  1O54 A;  3H0G A;  1E5V A;  1S3S A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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