3QE6A

Mouse pacsin 3 f-bar domain structure
Total Genus 117
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
117
sequence length
290
structure length
283
Chain Sequence
GSFWEAGNYRRTVQRVEDGHRLCGDLVSCFQERARIEKAYAQQLADWARKWRGAVEKGPQYGTLEKAWHAFFTAAERLSELHLEVREKLHGPDSERVRTWQRGAFHRPVLGGFRESRAAEDGFRKAQKPWLKRLKEVEASKKSYHTARKDEKTAQTRESHAQEQLRKLQERVGRCTKEAEKMKTQYEQTLAELNRYTPRYMEDMEQAFESCQAAERQRLLFFKDVLLTLHQHLDLSSSDKFHELHRDLQQSIEAASDEEDLRWWRSTHGPGMAMNWPQFEEWS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Endocytosis
molecule keywords Protein kinase C and casein kinase II substrate protein 3
publication title Rigidity of wedge loop in PACSIN 3 protein is a key factor in dictating diameters of tubules
pubmed doi rcsb
source organism Mus musculus
total genus 117
structure length 283
sequence length 290
chains with identical sequence B
ec nomenclature
pdb deposition date 2011-01-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00611 FCH Fes/CIP4, and EFC/F-BAR homology domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.60 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Arfaptin homology (AH) domain/BAR domain 3qe6A01
2EFKA 2FICA 4AVMA 2X3XA 4NSWA 1I49A 1Y2OA 3CAZA 2Q12A 1URUA 4I1QA 1X03A 3QWEA 3DYTA 3Q0KA 2RAIA 3HAJA 2RAJA 1I4LA 4FZSA 3G9GA 4NQIA 5C5BA 1I4DA 3HAHA 3QE6A 1ZWWA 2V0OA 3ACOA 2ELBA 2D1LA 2RAKA 2Z0NA 3M3WA 4DYLA 1I4TA 2YKTA 4ATMA 3PLTA 4H8SA 3LLLA 1WDZA 2Q13A 2X3WA 2D4CA 2C08A 2EFLA 4WPCA 3SYVA 4WPEA 5C5BB 3QNIA 3HAIA 1X04A 2X3VA 3I2WA 4BNEA 4DCNC 3ABHA 3OK8A 3Q84A 2Z0VA 4AKVA 3SOGA 2Z0OA
chains in the Genus database with same CATH superfamily
3BVXA 3ZEDA 1X03A 4AZHA 1DKXA 4G6QA 4JWIA 4JNEA 3CV5A 1JQKA 3EJQA 2YI9A 3LLLA 1GNTA 5KBPA 3QNIA 1SU7A 3DPQA 4JNFA 3ER9B 3ERCC 3A98A 3DX4A 1GNLA 2PY6A 4E3CA 1QX1A 5C5BA 2D1LA 3EJSA 3D2FA 1E2UA 2OBMA 3SYVA 2C08A 3RV0A 3VEBA 3Q84A 2YIAA 2F1BA 4IWOA 1W9MA 3T47A 4KIKA 3BUBA 4FM3A 3ER8C 3Q0KA 3B52X 2RAJA 2YIVX 4UDXX 3M3WA 1TQTA 2ALWA 2F7OA 3DDGA 3I04A 3CZNA 3HAIA 4AZ6A 3D52A 5E84A 4EZQA 3CKDA 2X3XA 1OA1A 4H6IA 2YL8A 1R34A 3B53X 3T4AG 3DX2A 4ATMA 2FYVA 2X3WA 4AZ7A 4H6HA 2GAFD 1OAOA 4R5LA 3CAZA 1DKYA 3QWEA 3EJRA 1WDZA 2D4CA 2ZXQA 4EZWA 1U00A 3D2EA 3OK8A 1SU6A 2YLLA 4AKVA 1QWUA 3QNJA 4JN4A 4PO2A 3CZSA 3DX0A 1TQWA 3HAHA 3F7WA 2Z0NA 2OBLA 3KAWA 1E1DA 4FZOA 4NPHA 2FICA 3D51A 2KHOA 2ND1A 3FD9A 3RV1A 4NQIA 3D4YA 2RT6A 1O7DB 2WYHA 4DYLA 2GF4A 4WPEA 4D8JA 4UDYX 1X04A 2X3VA 2OW7A 5FIGA 4R5KA 3DX3A 3BVUA 1HXKA 4F01A 4AVMA 1I49A 3KAVA 3HAJA 3G9GA 4IM2A 3BUDA 1SU8A 2EFLA 1HTYA 4EZTA 4R5IA 2GA9D 3DX1A 2EX3B 1I4LA 3VEAA 4EZZA 4EZRA 4JWDA 4EZVA 2WYIA 3PLTA 4WPCA 2Q13A 2YIBA 3I2WA 4IW0A 4IWQA 3C7NA 3BUQA 2MI7A 3DPOA 1QWNA 1ZYLA 2RAIA 4AZGA 3LVTA 4HR1B 1PS3A 2V0OA 2YL6A 2ELBA 2F7PA 2RAKA 1I4TA 2ND0A 3LMFA 4EZXA 4EZSA 4EZNA 2OW6A 4R5JA 2LM0A 4E81A 4EZOA 4NSWA 4JLCA 3EJPA 1I4DA 4AZCB 1TQUA 3EJUA 3UITA 3BUIA 2JNSA 3I39X 4H8SA 3BVVA 3L3PA 3D50A 4AZBA 4DCNC 4BNEA 1DKZA 3O3OB 2Z8YA 3T46A 3SOGA 1O7DC 1LQ7A 2YL9A 1YWMA 3L3OM 2F7QA 3O3MB 1HWWA 2YL5A 4M0MA 2F18A 5FLEX 3DPPA 2EFKA 2F1AA 3CVRA 4HYBA 4EZPA 1TQVA 2NCZA 3GI7A 4AZIA 3QA8A 4AZ5A 1UPXA 4FZPA 2YLAA 3ABHA 3RPMA 3BVWA 2F7RA 4HR1A 3EJTA 4JL9A 2X5CA 1Y2OA 2Q12A 3T48A 2YI8A 3T49A 3O3NB 3I01A 3ACOA 2QFFA 2PMRA 4R5GA 4IM3A 5C5BB 2Z0VA 1GN9A 1R5EA 1SUFA 3BVTA 4AZCA 1TQSA 3D4ZA 4EZYA 1OA0A 4I1QA 3DYTA 4FZSA 3QE6A 4KIKB 2QKWA 5TKYA 2OO2A 4EZUA 3KDRA 2QXLA 2JNKA 3OWGA 3OHXM 3VKHA 2Z0OA 4IM0A 4B9QA 4JWCA 1URUA 1R33A 3DDFA 3BLBA 2OZNB 2O0I1 4IWPA 1ZWWA 4F00A 3B51X 1MJGA 2YKTA 2WINM 1E9VA 3BUPA 2EWFA 2N3KA 2LXYA 4JWEA 4HY9A
chains in the Genus database with same CATH topology
2EFKA 2FICA 4AVMA 2X3XA 4NSWA 1I49A 1Y2OA 3CAZA 2Q12A 1URUA 4I1QA 1X03A 3QWEA 3DYTA 3Q0KA 2RAIA 3HAJA 2RAJA 1I4LA 4FZSA 3G9GA 4NQIA 5C5BA 1I4DA 3HAHA 3QE6A 1ZWWA 2V0OA 3ACOA 2ELBA 2D1LA 2RAKA 2Z0NA 3M3WA 4DYLA 1I4TA 2YKTA 4ATMA 3PLTA 4H8SA 3LLLA 1WDZA 2Q13A 2X3WA 2D4CA 2C08A 2EFLA 4WPCA 3SYVA 4WPEA 5C5BB 3QNIA 3HAIA 1X04A 2X3VA 3I2WA 4BNEA 4DCNC 3ABHA 3OK8A 3Q84A 2Z0VA 4AKVA 3SOGA 2Z0OA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2EFK A;  2FIC A;  4AVM A;  2X3X A;  4NSW A;  1I49 A;  1Y2O A;  3CAZ A;  2Q12 A;  1URU A;  4I1Q A;  1X03 A;  3QWE A;  3DYT A;  3Q0K A;  2RAI A;  3HAJ A;  2RAJ A;  1I4L A;  4FZS A;  3G9G A;  4NQI A;  5C5B A;  1I4D A;  3HAH A;  3QE6 A;  1ZWW A;  2V0O A;  3ACO A;  2ELB A;  2D1L A;  2RAK A;  2Z0N A;  3M3W A;  4DYL A;  1I4T A;  2YKT A;  4ATM A;  3PLT A;  4H8S A;  3LLL A;  1WDZ A;  2Q13 A;  2X3W A;  2D4C A;  2C08 A;  2EFL A;  4WPC A;  3SYV A;  4WPE A;  5C5B B;  3QNI A;  3HAI A;  1X04 A;  2X3V A;  3I2W A;  4BNE A;  4DCN C;  3ABH A;  3OK8 A;  3Q84 A;  2Z0V A;  4AKV A;  3SOG A;  2Z0O A; 
#chains in the Genus database with same CATH topology
 3BVX A;  3ZED A;  1X03 A;  4AZH A;  1DKX A;  4G6Q A;  4JWI A;  4JNE A;  3CV5 A;  1JQK A;  3EJQ A;  2YI9 A;  3LLL A;  1GNT A;  5KBP A;  3QNI A;  1SU7 A;  3DPQ A;  4JNF A;  3ER9 B;  3ERC C;  3A98 A;  3DX4 A;  1GNL A;  2PY6 A;  4E3C A;  1QX1 A;  5C5B A;  2D1L A;  3EJS A;  3D2F A;  1E2U A;  2OBM A;  3SYV A;  2C08 A;  3RV0 A;  3VEB A;  3Q84 A;  2YIA A;  2F1B A;  4IWO A;  1W9M A;  3T47 A;  4KIK A;  3BUB A;  4FM3 A;  3ER8 C;  3Q0K A;  3B52 X;  2RAJ A;  2YIV X;  4UDX X;  3M3W A;  1TQT A;  2ALW A;  2F7O A;  3DDG A;  3I04 A;  3CZN A;  3HAI A;  4AZ6 A;  3D52 A;  5E84 A;  4EZQ A;  3CKD A;  2X3X A;  1OA1 A;  4H6I A;  2YL8 A;  1R34 A;  3B53 X;  3T4A G;  3DX2 A;  4ATM A;  2FYV A;  2X3W A;  4AZ7 A;  4H6H A;  2GAF D;  1OAO A;  4R5L A;  3CAZ A;  1DKY A;  3QWE A;  3EJR A;  1WDZ A;  2D4C A;  2ZXQ A;  4EZW A;  1U00 A;  3D2E A;  3OK8 A;  1SU6 A;  2YLL A;  4AKV A;  1QWU A;  3QNJ A;  4JN4 A;  4PO2 A;  3CZS A;  3DX0 A;  1TQW A;  3HAH A;  3F7W A;  2Z0N A;  2OBL A;  3KAW A;  1E1D A;  4FZO A;  4NPH A;  2FIC A;  3D51 A;  2KHO A;  2ND1 A;  3FD9 A;  3RV1 A;  4NQI A;  3D4Y A;  2RT6 A;  1O7D B;  2WYH A;  4DYL A;  2GF4 A;  4WPE A;  4D8J A;  4UDY X;  1X04 A;  2X3V A;  2OW7 A;  5FIG A;  4R5K A;  3DX3 A;  3BVU A;  1HXK A;  4F01 A;  4AVM A;  1I49 A;  3KAV A;  3HAJ A;  3G9G A;  4IM2 A;  3BUD A;  1SU8 A;  2EFL A;  1HTY A;  4EZT A;  4R5I A;  2GA9 D;  3DX1 A;  2EX3 B;  1I4L A;  3VEA A;  4EZZ A;  4EZR A;  4JWD A;  4EZV A;  2WYI A;  3PLT A;  4WPC A;  2Q13 A;  2YIB A;  3I2W A;  4IW0 A;  4IWQ A;  3C7N A;  3BUQ A;  2MI7 A;  3DPO A;  1QWN A;  1ZYL A;  2RAI A;  4AZG A;  3LVT A;  4HR1 B;  1PS3 A;  2V0O A;  2YL6 A;  2ELB A;  2F7P A;  2RAK A;  1I4T A;  2ND0 A;  3LMF A;  4EZX A;  4EZS A;  4EZN A;  2OW6 A;  4R5J A;  2LM0 A;  4E81 A;  4EZO A;  4NSW A;  4JLC A;  3EJP A;  1I4D A;  4AZC B;  1TQU A;  3EJU A;  3UIT A;  3BUI A;  2JNS A;  3I39 X;  4H8S A;  3BVV A;  3L3P A;  3D50 A;  4AZB A;  4DCN C;  4BNE A;  1DKZ A;  3O3O B;  2Z8Y A;  3T46 A;  3SOG A;  1O7D C;  1LQ7 A;  2YL9 A;  1YWM A;  3L3O M;  2F7Q A;  3O3M B;  1HWW A;  2YL5 A;  4M0M A;  2F18 A;  5FLE X;  3DPP A;  2EFK A;  2F1A A;  3CVR A;  4HYB A;  4EZP A;  1TQV A;  2NCZ A;  3GI7 A;  4AZI A;  3QA8 A;  4AZ5 A;  1UPX A;  4FZP A;  2YLA A;  3ABH A;  3RPM A;  3BVW A;  2F7R A;  4HR1 A;  3EJT A;  4JL9 A;  2X5C A;  1Y2O A;  2Q12 A;  3T48 A;  2YI8 A;  3T49 A;  3O3N B;  3I01 A;  3ACO A;  2QFF A;  2PMR A;  4R5G A;  4IM3 A;  5C5B B;  2Z0V A;  1GN9 A;  1R5E A;  1SUF A;  3BVT A;  4AZC A;  1TQS A;  3D4Z A;  4EZY A;  1OA0 A;  4I1Q A;  3DYT A;  4FZS A;  3QE6 A;  4KIK B;  2QKW A;  5TKY A;  2OO2 A;  4EZU A;  3KDR A;  2QXL A;  2JNK A;  3OWG A;  3OHX M;  3VKH A;  2Z0O A;  4IM0 A;  4B9Q A;  4JWC A;  1URU A;  1R33 A;  3DDF A;  3BLB A;  2OZN B;  2O0I 1;  4IWP A;  1ZWW A;  4F00 A;  3B51 X;  1MJG A;  2YKT A;  2WIN M;  1E9V A;  3BUP A;  2EWF A;  2N3K A;  2LXY A;  4JWE A;  4HY9 A; 
#chains in the Genus database with same CATH homology
 2EFK A;  2FIC A;  4AVM A;  2X3X A;  4NSW A;  1I49 A;  1Y2O A;  3CAZ A;  2Q12 A;  1URU A;  4I1Q A;  1X03 A;  3QWE A;  3DYT A;  3Q0K A;  2RAI A;  3HAJ A;  2RAJ A;  1I4L A;  4FZS A;  3G9G A;  4NQI A;  5C5B A;  1I4D A;  3HAH A;  3QE6 A;  1ZWW A;  2V0O A;  3ACO A;  2ELB A;  2D1L A;  2RAK A;  2Z0N A;  3M3W A;  4DYL A;  1I4T A;  2YKT A;  4ATM A;  3PLT A;  4H8S A;  3LLL A;  1WDZ A;  2Q13 A;  2X3W A;  2D4C A;  2C08 A;  2EFL A;  4WPC A;  3SYV A;  4WPE A;  5C5B B;  3QNI A;  3HAI A;  1X04 A;  2X3V A;  3I2W A;  4BNE A;  4DCN C;  3ABH A;  3OK8 A;  3Q84 A;  2Z0V A;  4AKV A;  3SOG A;  2Z0O A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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