3QF2A

Crystal structure of nalp3 pyd
Total Genus 32
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
32
sequence length
90
structure length
90
Chain Sequence
STRCKLARYLEDLEDVDLKKFKMHLEDYPPQKGCIPLPRGQTEKADHVDLATLMIDFNGEEKAWAMAVWIFAAINRRDLYEKAKRDEPKW
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Apoptosis
molecule keywords NACHT, LRR and PYD domains-containing protein 3
publication title Crystal Structure of NALP3 Protein Pyrin Domain (PYD) and Its Implications in Inflammasome Assembly
pubmed doi rcsb
source organism Homo sapiens
total genus 32
structure length 90
sequence length 90
chains with identical sequence B
ec nomenclature
pdb deposition date 2011-01-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02758 PYRIN PAAD/DAPIN/Pyrin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.533.10 Mainly Alpha Orthogonal Bundle Death Domain, Fas Death Domain, Fas 3qf2A00
2N7ZA 4D8OA 4M9XA 2LWEA 4P4HI 4P4HA 2L6AA 4M9ZA 4RHWA 2L9MA 3CRDA 4JUPA 2DBGA 1Z6TA 1ICHA 2IB1A 2LS7A 4FH0A 4JQWA 1A1ZA 2G7RA 2B1WA 3MOPG 4N1KA 2GF5A 2KM6A 1A1WA 2NZ7A 3YGSP 2O71A 1WH4A 3EZQB 2NSNA 4DWNA 4ZBWA 4LWDA 1DDFA 2MS7A 4M9SA 1UCPA 3QF2A 3YGSC 3J63A 2MS8A 2OF5H 4E9MA 2F1SA 4O6XA 1WMGA 2BBZA 1FADA 4I16A 2N00A 2KN6A 4RHWE 4O9LA 4N1JA 1WXPA 4A2WA 2N80A 4NQKA 2N83A 1N3KA 2DBFA 3LQRA 3EZQA 3LQQA 1E3YA 1CY5A 2OF5A 2P1HA 2NAQA 1D2ZB 1YGOA 2M5VA 1E41A 2MN4A 1NGRA 2YU0A 2DBHA 2YGSA 3MOPK 4A2QA 2HM2Q 4IZAB 3T6PA 2N97A 1DGNA 2LWDA 1C15A 4IZ7B 4F42A 4QOBA 2MB9A 2BBRA 3CL3A 3J6JA 2D96A 2DBDA 1CWWA 1PN5A 2DO9A 2VGQA 3MOPA 4F44A 2YVIA 4O7QA 2N1FA 4UZ0A 2MPCA 2YQFA 4EWIA 4IZ5E 3KATA 4O9FA 2A5YB 2A9IA 1D2ZA 4N1LA
chains in the Genus database with same CATH superfamily
2N7ZA 4D8OA 4M9XA 2LWEA 4P4HI 4P4HA 2L6AA 4M9ZA 4RHWA 2L9MA 3CRDA 4JUPA 2DBGA 1Z6TA 1ICHA 2IB1A 2LS7A 4FH0A 4JQWA 1A1ZA 2G7RA 2B1WA 2MJMA 3MOPG 4N1KA 2GF5A 2KM6A 1A1WA 2NZ7A 3YGSP 2O71A 1WH4A 3EZQB 2NSNA 4DWNA 4ZBWA 4LWDA 1DDFA 2MS7A 4M9SA 1UCPA 3QF2A 3YGSC 3J63A 2MS8A 2OF5H 4E9MA 2F1SA 4O6XA 1WMGA 2BBZA 1FADA 4I16A 2N00A 2KN6A 4RHWE 4O9LA 4N1JA 1WXPA 4A2WA 2N80A 4NQKA 2N83A 1N3KA 2DBFA 3LQRA 3EZQA 3LQQA 1E3YA 1CY5A 2OF5A 2P1HA 2NAQA 1D2ZB 1YGOA 2M5VA 1E41A 2MN4A 1NGRA 2YU0A 2DBHA 2YGSA 3MOPK 4A2QA 2HM2Q 4IZAB 3T6PA 2N97A 1DGNA 2LWDA 1C15A 4IZ7B 4F42A 4QOBA 2MB9A 2BBRA 3CL3A 3J6JA 2D96A 2DBDA 1CWWA 1PN5A 2DO9A 2VGQA 3MOPA 4F44A 2XV9A 2YVIA 4O7QA 2N1FA 4UZ0A 2MPCA 2YQFA 4EWIA 4IZ5E 3KATA 4O9FA 2A5YB 2A9IA 1D2ZA 4N1LA
chains in the Genus database with same CATH topology
2N7ZA 4D8OA 4M9XA 2LWEA 4P4HI 4P4HA 2L6AA 4M9ZA 4RHWA 2L9MA 3CRDA 4JUPA 2DBGA 1Z6TA 1ICHA 2IB1A 2LS7A 4FH0A 4JQWA 1A1ZA 2G7RA 2B1WA 2MJMA 3MOPG 4N1KA 2GF5A 2KM6A 1A1WA 2NZ7A 3YGSP 2O71A 1WH4A 3EZQB 2NSNA 4DWNA 4ZBWA 4LWDA 1DDFA 2MS7A 4M9SA 1UCPA 3QF2A 3YGSC 3J63A 2MS8A 2OF5H 4E9MA 2F1SA 4O6XA 1WMGA 2BBZA 1FADA 4I16A 2N00A 2KN6A 4RHWE 4O9LA 4N1JA 1WXPA 4A2WA 2N80A 4NQKA 2N83A 1N3KA 2DBFA 3LQRA 3EZQA 3LQQA 1E3YA 1CY5A 2OF5A 2P1HA 2NAQA 1D2ZB 1YGOA 2M5VA 1E41A 2MN4A 1NGRA 2YU0A 2DBHA 2YGSA 3MOPK 4A2QA 2HM2Q 4IZAB 3T6PA 2N97A 1DGNA 2LWDA 1C15A 4IZ7B 4F42A 4QOBA 2MB9A 2BBRA 3CL3A 3J6JA 2D96A 2DBDA 1CWWA 1PN5A 2DO9A 2VGQA 3MOPA 4F44A 2XV9A 2YVIA 4O7QA 2N1FA 4UZ0A 2MPCA 2YQFA 4EWIA 4IZ5E 3KATA 4O9FA 2A5YB 2A9IA 1D2ZA 4N1LA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2N7Z A;  4D8O A;  4M9X A;  2LWE A;  4P4H I;  4P4H A;  2L6A A;  4M9Z A;  4RHW A;  2L9M A;  3CRD A;  4JUP A;  2DBG A;  1Z6T A;  1ICH A;  2IB1 A;  2LS7 A;  4FH0 A;  4JQW A;  1A1Z A;  2G7R A;  2B1W A;  3MOP G;  4N1K A;  2GF5 A;  2KM6 A;  1A1W A;  2NZ7 A;  3YGS P;  2O71 A;  1WH4 A;  3EZQ B;  2NSN A;  4DWN A;  4ZBW A;  4LWD A;  1DDF A;  2MS7 A;  4M9S A;  1UCP A;  3QF2 A;  3YGS C;  3J63 A;  2MS8 A;  2OF5 H;  4E9M A;  2F1S A;  4O6X A;  1WMG A;  2BBZ A;  1FAD A;  4I16 A;  2N00 A;  2KN6 A;  4RHW E;  4O9L A;  4N1J A;  1WXP A;  4A2W A;  2N80 A;  4NQK A;  2N83 A;  1N3K A;  2DBF A;  3LQR A;  3EZQ A;  3LQQ A;  1E3Y A;  1CY5 A;  2OF5 A;  2P1H A;  2NAQ A;  1D2Z B;  1YGO A;  2M5V A;  1E41 A;  2MN4 A;  1NGR A;  2YU0 A;  2DBH A;  2YGS A;  3MOP K;  4A2Q A;  2HM2 Q;  4IZA B;  3T6P A;  2N97 A;  1DGN A;  2LWD A;  1C15 A;  4IZ7 B;  4F42 A;  4QOB A;  2MB9 A;  2BBR A;  3CL3 A;  3J6J A;  2D96 A;  2DBD A;  1CWW A;  1PN5 A;  2DO9 A;  2VGQ A;  3MOP A;  4F44 A;  2YVI A;  4O7Q A;  2N1F A;  4UZ0 A;  2MPC A;  2YQF A;  4EWI A;  4IZ5 E;  3KAT A;  4O9F A;  2A5Y B;  2A9I A;  1D2Z A;  4N1L A; 
#chains in the Genus database with same CATH topology
 2N7Z A;  4D8O A;  4M9X A;  2LWE A;  4P4H I;  4P4H A;  2L6A A;  4M9Z A;  4RHW A;  2L9M A;  3CRD A;  4JUP A;  2DBG A;  1Z6T A;  1ICH A;  2IB1 A;  2LS7 A;  4FH0 A;  4JQW A;  1A1Z A;  2G7R A;  2B1W A;  2MJM A;  3MOP G;  4N1K A;  2GF5 A;  2KM6 A;  1A1W A;  2NZ7 A;  3YGS P;  2O71 A;  1WH4 A;  3EZQ B;  2NSN A;  4DWN A;  4ZBW A;  4LWD A;  1DDF A;  2MS7 A;  4M9S A;  1UCP A;  3QF2 A;  3YGS C;  3J63 A;  2MS8 A;  2OF5 H;  4E9M A;  2F1S A;  4O6X A;  1WMG A;  2BBZ A;  1FAD A;  4I16 A;  2N00 A;  2KN6 A;  4RHW E;  4O9L A;  4N1J A;  1WXP A;  4A2W A;  2N80 A;  4NQK A;  2N83 A;  1N3K A;  2DBF A;  3LQR A;  3EZQ A;  3LQQ A;  1E3Y A;  1CY5 A;  2OF5 A;  2P1H A;  2NAQ A;  1D2Z B;  1YGO A;  2M5V A;  1E41 A;  2MN4 A;  1NGR A;  2YU0 A;  2DBH A;  2YGS A;  3MOP K;  4A2Q A;  2HM2 Q;  4IZA B;  3T6P A;  2N97 A;  1DGN A;  2LWD A;  1C15 A;  4IZ7 B;  4F42 A;  4QOB A;  2MB9 A;  2BBR A;  3CL3 A;  3J6J A;  2D96 A;  2DBD A;  1CWW A;  1PN5 A;  2DO9 A;  2VGQ A;  3MOP A;  4F44 A;  2XV9 A;  2YVI A;  4O7Q A;  2N1F A;  4UZ0 A;  2MPC A;  2YQF A;  4EWI A;  4IZ5 E;  3KAT A;  4O9F A;  2A5Y B;  2A9I A;  1D2Z A;  4N1L A; 
#chains in the Genus database with same CATH homology
 2N7Z A;  4D8O A;  4M9X A;  2LWE A;  4P4H I;  4P4H A;  2L6A A;  4M9Z A;  4RHW A;  2L9M A;  3CRD A;  4JUP A;  2DBG A;  1Z6T A;  1ICH A;  2IB1 A;  2LS7 A;  4FH0 A;  4JQW A;  1A1Z A;  2G7R A;  2B1W A;  2MJM A;  3MOP G;  4N1K A;  2GF5 A;  2KM6 A;  1A1W A;  2NZ7 A;  3YGS P;  2O71 A;  1WH4 A;  3EZQ B;  2NSN A;  4DWN A;  4ZBW A;  4LWD A;  1DDF A;  2MS7 A;  4M9S A;  1UCP A;  3QF2 A;  3YGS C;  3J63 A;  2MS8 A;  2OF5 H;  4E9M A;  2F1S A;  4O6X A;  1WMG A;  2BBZ A;  1FAD A;  4I16 A;  2N00 A;  2KN6 A;  4RHW E;  4O9L A;  4N1J A;  1WXP A;  4A2W A;  2N80 A;  4NQK A;  2N83 A;  1N3K A;  2DBF A;  3LQR A;  3EZQ A;  3LQQ A;  1E3Y A;  1CY5 A;  2OF5 A;  2P1H A;  2NAQ A;  1D2Z B;  1YGO A;  2M5V A;  1E41 A;  2MN4 A;  1NGR A;  2YU0 A;  2DBH A;  2YGS A;  3MOP K;  4A2Q A;  2HM2 Q;  4IZA B;  3T6P A;  2N97 A;  1DGN A;  2LWD A;  1C15 A;  4IZ7 B;  4F42 A;  4QOB A;  2MB9 A;  2BBR A;  3CL3 A;  3J6J A;  2D96 A;  2DBD A;  1CWW A;  1PN5 A;  2DO9 A;  2VGQ A;  3MOP A;  4F44 A;  2XV9 A;  2YVI A;  4O7Q A;  2N1F A;  4UZ0 A;  2MPC A;  2YQF A;  4EWI A;  4IZ5 E;  3KAT A;  4O9F A;  2A5Y B;  2A9I A;  1D2Z A;  4N1L A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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