3QFIA

X-ray crystal structure of transcriptional regulator (ef0465) from enterococcus faecalis, northeast structural genomics consortium target efr190
Total Genus 76
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
76
sequence length
276
structure length
261
Chain Sequence
TANIDAQEPFSVLLMGIDTGDDTTMVVTINPKENKSTMISLDRDILTDIVGNDTQDKLNHAYAFGGAEMAINTVQELLDIPIHHYVSINMKGLKDLIDAVGGIEVDNTIGEFTGITVPAGKIKLDGTTGLAYARMRHEDPEGDVGRQRRQREVVEKIVRKVMSFDYRKILDAVEANVKTDLTWDDMMDIQSKYLSAFKTIDSEQLQGYSATIDDIYYQVLDPNSLYKTQTTLRKQLGLKEHASEREKDLAFYNQFSYAVTD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription regulator
molecule keywords Transcriptional regulator
publication title X-ray crystal structure of transcriptional regulator (EF0465) from Enterococcus faecalis, Northeast Structural Genomics Consortium Target EfR190
rcsb
source organism Enterococcus faecalis
total genus 76
structure length 261
sequence length 276
ec nomenclature
pdb deposition date 2011-01-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03816 LytR_cpsA_psr Cell envelope-related transcriptional attenuator domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.260.150 Mainly Alpha Orthogonal Bundle 434 Repressor (Amino-terminal Domain) 434 Repressor (Amino-terminal Domain) 3qfiA00
3QFIA 2XXPA 3OWQA 3TFLA 2XXQA 3NXHA 3OKZA 4DE8A 3PE5A 4OBMA 3NROA 4DE9A 3TEPA 3MEJA 3TELA
chains in the Genus database with same CATH superfamily
4IWRA 3SCHA 1ZAYA 4ER3A 2IV1A 2PXLA 2PUBA 3G7DA 1L1MA 1QB2A 1SQ8A 3R09A 3L1PA 1QZXA 2HCSA 1LLIA 5DRTA 2L49A 2JVLA 2PXPA 4Z5CA 3DM5A 3FYMA 4I6TA 4Z58A 2O38A 2V3CC 3QOWA 2PUDA 5DTRA 2R1JL 1DW9A 2EF8A 1PERL 2MQKA 1QPZA 2IUOA 1JFTA 3GZDA 2PUCA 1NERA 1JH9A 1ZZ8A 5GAGi 3SCFA 2GZUA 3GZDC 4Z59A 2JCGA 4EKGA 2MXDA 2M4HA 2PUGA 4GQMA 3SX0A 2XI8A 4YARA 3GN5A 5GAHi 1WETA 4X4EA 2AUWA 3CLCA 4Z5HA 2PUFA 4I6UA 2EWTA 4PU3C 2LLVA 4PU4C 1PRVA 1HF0A 1ZVVA 1EFAA 4GHJA 2AXUA 3CECA 1ZZ6A 2LYSA 1RIOA 2JQEA 1IC8A 1NEQA 2LYLA 4PU8A 2HSGA 4ER5A 4X4GA 1WH8A 3TELA 1O4XA 2O49A 2XXQA 2J7WA 4JCYA 1YSEA 2FJRA 4EK9A 2BNOA 1UXDA 2XSDC 3LISA 3KZ3A 2PXTA 2LCVA 3GUUA 3BS3A 1CJGA 2PXDA 3QYXA 3ME5A 2XCJA 3TEPA 3NZLA 4FBIA 3F51A 3QWGA 2J7UA 2BNMA 2XJ3A 2LYJA 2KEKA 2LYPA 3OQOA 4X4IA 2EBYA 3NXHA 1MFQC 4X4FA 1Y9QA 2AW6A 1X57A 3M9LA 2AXVA 1VPWA 5K98B 2PE5A 3OWQA 4YBAA 1S7EA 1ZZ9A 3OP9A 4FN3A 2CROA 2R63A 2PXVA 3ZKCA 4X4CA 4DE9A 2ODRD 3VK0A 1PRAA 2PXUA 3KJXA 2YBDA 3KXAA 3BDNA 4I6RA 1RPEL 2PXKA 2MEZA 3A9XA 2XIUA 4J1XA 2PXEA 2GRLA 1R63A 3F52A 2KZ8A 2IVQA 2A6CA 1WH6A 3GN5B 1ZZ7A 4YG7B 1LMB3 1E3OC 1ZUGA 4HRAA 3U3WA 1BDIA 2LNMA 4X4HA 1CQTA 1HQ1A 1RZRD 1RZSA 4ER6A 1UTXA 5DT2A 3HZIB 3GBFA 1Y7YA 3ZHIA 3IVPA 2H8RA 2BNNA 2FFHA 1QQAA 2HCNA 3A9ZA 2IU7A 2BJCA 2LYKA 3H5TA 2HINA 2HFZA 2ICPA 4J1WA 2WUSR 4OBMA 1OSLA 4EKIA 1PNRA 5DTQA 3O9XA 3UWPA 4MCTA 3PXPA 2IVGA 1BDHA 3JXDL 4X4BA 2LYQA 3NROA 3QF3A 4EZIA 3A9YA 3MEJA 4O8BA 2WIUB 5DRYA 2XXAA 3GZCA 4JQDA 4I8TA 3BD1A 3B7HA 4Z5DA 1DWKA 3LQXA 3UFDA 3R1FA 2PIJA 1LQCA 3RZZA 3ZHMA 3SR4A 1GT0C 3FYAA 3MLFA 2VEOA 3OQNA 1XWRA 1QQBA 2GRMA 2PUAA 1ZZBA 5A7LA 1LCDA 3QQ6A 4PU7A 1X2LA 1AU7A 1PRUA 2OFYA 4YG1A 1OCTC 4IA8A 5JUWA 3CROL 2IVBA 3JXBC 3D1NI 2L1PA 1JFSA 4OB4A 4IVZA 4ER0A 3OKZA 1ZS4A 3OQMA 4NDWA 3LFPA 3G0TA 1R69A 1WIZA 4YG4A 5DTMA 3TFLA 4MCXA 2LLWA 1QP4A 3PE5A 5DSXA 4JCXA 1U2ZA 3SCGA 3TRBA 2CSFA 2ICTA 2PUEA 3KL4A 1QP7A 3ZPXA 3VWSA 3QOXA 2AWIA 2PXFA 2AXZA 3EUSA 4Q2JA 1JWLA 3S8QA 4X4DA 1LCCA 1QP0A 3F6WA 2PPXA 3DNVB 2B5AA 3G5GA 2L8NA 2O4AA 4F8DA 2PXBA 3QFIA 1RZRA 4EQZA 1ADRA 1ZZCA 2LYRA 4Y42A 2PXQA 4WVLA 1ZPQA 1B0NA 1DULA 2OR1L 1POUA 2XXPA 4DE8A 3NDBB 2KEJA 2D5VA 1UXCA 3JXCL 4ER7A 3FMYA 2KEIA 3OMTA 1NW3A 2KPJA
chains in the Genus database with same CATH topology
3QFIA 2YBDA 3ZPXA 2XXQA 3VWSA 3NXHA 3OKZA 3QOXA 4ER0A 3A9XA 3NZLA 4EQZA 4EKGA 3QOWA 2HFZA 2J7WA 2MXDA 3M9LA 3NROA 4ER3A 3G0TA 4Q2JA 2LLVA 3A9YA 3MEJA 5DTRA 4EZIA 2LNMA 3OWQA 4WVLA 2M4HA 3SR4A 5DRYA 4EK9A 4OBMA 3GZCA 3GZDA 3SX0A 2J7UA 3R09A 2XXPA 4EKIA 5DTMA 3TFLA 2HCSA 5DTQA 4ER6A 2LLWA 4DE8A 5DT2A 3UWPA 3GUUA 5DRTA 4DE9A 3PE5A 5DSXA 2ODRD 4ER5A 5JUWA 4ER7A 1U2ZA 1NW3A 2VEOA 2HCNA 2L1PA 3A9ZA 3GZDC 3ME5A 4HRAA 3TEPA 3TELA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3QFI A;  2XXP A;  3OWQ A;  3TFL A;  2XXQ A;  3NXH A;  3OKZ A;  4DE8 A;  3PE5 A;  4OBM A;  3NRO A;  4DE9 A;  3TEP A;  3MEJ A;  3TEL A; 
#chains in the Genus database with same CATH topology
 4IWR A;  3SCH A;  1ZAY A;  4ER3 A;  2IV1 A;  2PXL A;  2PUB A;  3G7D A;  1L1M A;  1QB2 A;  1SQ8 A;  3R09 A;  3L1P A;  1QZX A;  2HCS A;  1LLI A;  5DRT A;  2L49 A;  2JVL A;  2PXP A;  4Z5C A;  3DM5 A;  3FYM A;  4I6T A;  4Z58 A;  2O38 A;  2V3C C;  3QOW A;  2PUD A;  5DTR A;  2R1J L;  1DW9 A;  2EF8 A;  1PER L;  2MQK A;  1QPZ A;  2IUO A;  1JFT A;  3GZD A;  2PUC A;  1NER A;  1JH9 A;  1ZZ8 A;  5GAG i;  3SCF A;  2GZU A;  3GZD C;  4Z59 A;  2JCG A;  4EKG A;  2MXD A;  2M4H A;  2PUG A;  4GQM A;  3SX0 A;  2XI8 A;  4YAR A;  3GN5 A;  5GAH i;  1WET A;  4X4E A;  2AUW A;  3CLC A;  4Z5H A;  2PUF A;  4I6U A;  2EWT A;  4PU3 C;  2LLV A;  4PU4 C;  1PRV A;  1HF0 A;  1ZVV A;  1EFA A;  4GHJ A;  2AXU A;  3CEC A;  1ZZ6 A;  2LYS A;  1RIO A;  2JQE A;  1IC8 A;  1NEQ A;  2LYL A;  4PU8 A;  2HSG A;  4ER5 A;  4X4G A;  1WH8 A;  3TEL A;  1O4X A;  2O49 A;  2XXQ A;  2J7W A;  4JCY A;  1YSE A;  2FJR A;  4EK9 A;  2BNO A;  1UXD A;  2XSD C;  3LIS A;  3KZ3 A;  2PXT A;  2LCV A;  3GUU A;  3BS3 A;  1CJG A;  2PXD A;  3QYX A;  3ME5 A;  2XCJ A;  3TEP A;  3NZL A;  4FBI A;  3F51 A;  3QWG A;  2J7U A;  2BNM A;  2XJ3 A;  2LYJ A;  2KEK A;  2LYP A;  3OQO A;  4X4I A;  2EBY A;  3NXH A;  1MFQ C;  4X4F A;  1Y9Q A;  2AW6 A;  1X57 A;  3M9L A;  2AXV A;  1VPW A;  5K98 B;  2PE5 A;  3OWQ A;  4YBA A;  1S7E A;  1ZZ9 A;  3OP9 A;  4FN3 A;  2CRO A;  2R63 A;  2PXV A;  3ZKC A;  4X4C A;  4DE9 A;  2ODR D;  3VK0 A;  1PRA A;  2PXU A;  3KJX A;  2YBD A;  3KXA A;  3BDN A;  4I6R A;  1RPE L;  2PXK A;  2MEZ A;  3A9X A;  2XIU A;  4J1X A;  2PXE A;  2GRL A;  1R63 A;  3F52 A;  2KZ8 A;  2IVQ A;  2A6C A;  1WH6 A;  3GN5 B;  1ZZ7 A;  4YG7 B;  1LMB 3;  1E3O C;  1ZUG A;  4HRA A;  3U3W A;  1BDI A;  2LNM A;  4X4H A;  1CQT A;  1HQ1 A;  1RZR D;  1RZS A;  4ER6 A;  1UTX A;  5DT2 A;  3HZI B;  3GBF A;  1Y7Y A;  3ZHI A;  3IVP A;  2H8R A;  2BNN A;  2FFH A;  1QQA A;  2HCN A;  3A9Z A;  2IU7 A;  2BJC A;  2LYK A;  3H5T A;  2HIN A;  2HFZ A;  2ICP A;  4J1W A;  2WUS R;  4OBM A;  1OSL A;  4EKI A;  1PNR A;  5DTQ A;  3O9X A;  3UWP A;  4MCT A;  3PXP A;  2IVG A;  1BDH A;  3JXD L;  4X4B A;  2LYQ A;  3NRO A;  3QF3 A;  4EZI A;  3A9Y A;  3MEJ A;  4O8B A;  2WIU B;  5DRY A;  2XXA A;  3GZC A;  4JQD A;  4I8T A;  3BD1 A;  3B7H A;  4Z5D A;  1DWK A;  3LQX A;  3UFD A;  3R1F A;  2PIJ A;  1LQC A;  3RZZ A;  3ZHM A;  3SR4 A;  1GT0 C;  3FYA A;  3MLF A;  2VEO A;  3OQN A;  1XWR A;  1QQB A;  2GRM A;  2PUA A;  1ZZB A;  5A7L A;  1LCD A;  3QQ6 A;  4PU7 A;  1X2L A;  1AU7 A;  1PRU A;  2OFY A;  4YG1 A;  1OCT C;  4IA8 A;  5JUW A;  3CRO L;  2IVB A;  3JXB C;  3D1N I;  2L1P A;  1JFS A;  4OB4 A;  4IVZ A;  4ER0 A;  3OKZ A;  1ZS4 A;  3OQM A;  4NDW A;  3LFP A;  3G0T A;  1R69 A;  1WIZ A;  4YG4 A;  5DTM A;  3TFL A;  4MCX A;  2LLW A;  1QP4 A;  3PE5 A;  5DSX A;  4JCX A;  1U2Z A;  3SCG A;  3TRB A;  2CSF A;  2ICT A;  2PUE A;  3KL4 A;  1QP7 A;  3ZPX A;  3VWS A;  3QOX A;  2AWI A;  2PXF A;  2AXZ A;  3EUS A;  4Q2J A;  1JWL A;  3S8Q A;  4X4D A;  1LCC A;  1QP0 A;  3F6W A;  2PPX A;  3DNV B;  2B5A A;  3G5G A;  2L8N A;  2O4A A;  4F8D A;  2PXB A;  3QFI A;  1RZR A;  4EQZ A;  1ADR A;  1ZZC A;  2LYR A;  4Y42 A;  2PXQ A;  4WVL A;  1ZPQ A;  1B0N A;  1DUL A;  2OR1 L;  1POU A;  2XXP A;  4DE8 A;  3NDB B;  2KEJ A;  2D5V A;  1UXC A;  3JXC L;  4ER7 A;  3FMY A;  2KEI A;  3OMT A;  1NW3 A;  2KPJ A; 
#chains in the Genus database with same CATH homology
 3QFI A;  2YBD A;  3ZPX A;  2XXQ A;  3VWS A;  3NXH A;  3OKZ A;  3QOX A;  4ER0 A;  3A9X A;  3NZL A;  4EQZ A;  4EKG A;  3QOW A;  2HFZ A;  2J7W A;  2MXD A;  3M9L A;  3NRO A;  4ER3 A;  3G0T A;  4Q2J A;  2LLV A;  3A9Y A;  3MEJ A;  5DTR A;  4EZI A;  2LNM A;  3OWQ A;  4WVL A;  2M4H A;  3SR4 A;  5DRY A;  4EK9 A;  4OBM A;  3GZC A;  3GZD A;  3SX0 A;  2J7U A;  3R09 A;  2XXP A;  4EKI A;  5DTM A;  3TFL A;  2HCS A;  5DTQ A;  4ER6 A;  2LLW A;  4DE8 A;  5DT2 A;  3UWP A;  3GUU A;  5DRT A;  4DE9 A;  3PE5 A;  5DSX A;  2ODR D;  4ER5 A;  5JUW A;  4ER7 A;  1U2Z A;  1NW3 A;  2VEO A;  2HCN A;  2L1P A;  3A9Z A;  3GZD C;  3ME5 A;  4HRA A;  3TEP A;  3TEL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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