3RV1A

Crystal structure of the n-terminal and rnase iii domains of k. polysporus dcr1 e224q mutant
Total Genus 79
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
79
sequence length
242
structure length
217
Chain Sequence
SNELKVREFYRLHNACVKLKESIKLIYENPLVTDQNVLNLGTAENTIDYTILNTPTLNVAKTLLGNRYSLDLIDLFQSHDFKDSNTDVDMFIKYPVVYDENLENLAFMHKSQLSNERLEFLGDSWLGALVSYIVYTRFPSANEGMLSQMKESIVNNNNLFDWSTKLNFTKRLQGNIAKRYADCVQAYIGALVIDRFGTEFLDIKEWLEELSEKKLAK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Rna binding protein
molecule keywords K. polysporus Dcr1
publication title The inside-out mechanism of dicers from budding yeasts.
pubmed doi rcsb
source organism Vanderwaltozyma polyspora
total genus 79
structure length 217
sequence length 242
chains with identical sequence B
ec nomenclature
pdb deposition date 2011-05-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00636 Ribonuclease_3 Ribonuclease III domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1520.10 Mainly Alpha Orthogonal Bundle Ribonuclease iii, N-terminal Endonuclease Domain; Chain A Ribonuclease III domain 3rv1A02
1.20.1270.260 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Substrate Binding Domain Of Dnak; Chain:A; Domain 2 3rv1A01
2QVWA 2GSLA 1O0WA 4M30A 1YYWA 3N3WA 3RV1A 2NUEA 2EB1A 2NUGA 4OOGC 1YYOA 2FFLA 1JFZA 2A11A 1YZ9A 1RC5A 4OUNA 3RV0A 1YYKA 3C4BA 1I4SA 4M2ZA 3C4TA 2EZ6A 2NUFA 3O2RA 1U61A 1RC7A 3O2RB
chains in the Genus database with same CATH superfamily
4AZ5A 4NPHA 1SU6A 3O3OB 3BUBA 3D50A 4IM2A 4JLCA 2D1LA 3DX4A 3OK8A 3CZNA 3UITA 2OO2A 4IM3A 4HY9A 4EZSA 2GA9D 3I01A 3C7NA 4EZWA 3CZSA 3DDGA 2QXLA 2YL8A 2YKTA 3HAHA 2NCZA 1SUFA 1JFZA 2A11A 2RAJA 4OUNA 3C4BA 2X3XA 3OWGA 5C5BB 3DPQA 2EFKA 2YIBA 3Q84A 1GNTA 1ZYLA 4B9QA 4KIKB 1ZTDA 4F00A 1TQTA 4AZ6A 1TQWA 2KHOA 3HAIA 3DX0A 4IWQA 1E1DA 3BUQA 3EJUA 1W9MA 5E84A 3QNJA 2YLAA 4IW0A 1E2UA 3BUPA 1R34A 2F7OA 2GAFD 1I4DA 1DKYA 1OAOA 2EWFA 2YL5A 3I39X 3I04A 2QKWA 1I4LA 4E3CA 3DPPA 3D52A 4NSWA 4AZCB 2N3KA 3ABHA 1X03A 3DX3A 3SYVA 3T48A 3CKDA 2F1AA 1R5EA 3RPMA 2EB1A 2FFLA 1X04A 1URUA 4HYBA 4H8SA 2LM0A 3B51X 2NUFA 2Z0VA 3D4ZA 4FZPA 2Z8YA 3CAZA 1E9VA 1QWNA 3D51A 1GN9A 2YI9A 2O0I1 3KAVA 4E81A 4AZ7A 2X5CA 2YIVX 1LQ7A 3BVUA 2OBLA 2OW7A 2Z0OA 3BVTA 4EZQA 2YIAA 4PO2A 4NQIA 1MJGA 2F7QA 2LXYA 3EJTA 4EZXA 1RC7A 2C08A 2WINM 4EZNA 2ZXQA 3BUIA 4IM0A 3PLTA 3D4YA 1DKXA 3B53X 3M3WA 4EZYA 1SU7A 4HR1B 3ZEDA 4AKVA 4DYLA 1UPXA 4EZRA 2JNSA 1YYKA 4M2ZA 4AZBA 1Y2OA 3O2RA 3CVRA 2YI8A 3BVXA 3B52X 3HAJA 2ALWA 4R5IA 1TQVA 3RV1A 4AZGA 4OOGC 3DDFA 2F1BA 2OW6A 4JWCA 3ACOA 3LLLA 1O7DB 3BVWA 3LMFA 3DX2A 1OA1A 3EJPA 2GSLA 4M0MA 2OZNB 1YWMA 2X3VA 2NUGA 4JNEA 1HXKA 4JN4A 3T47A 4ATMA 3OHXM 1ZWWA 4JL9A 3GI7A 5TKYA 2RAIA 3O3MB 2WYIA 4EZUA 1RC5A 3T4AG 1I4SA 3C4TA 2EZ6A 3L3PA 1U61A 2QVWA 1PS3A 4WPEA 2F7PA 1OA0A 4FM3A 4WPCA 3ER9B 1HWWA 3D2EA 4AVMA 2GF4A 1YZ9A 2ELBA 5C5BA 4R5JA 1HTYA 4JWDA 4R5KA 3Q0KA 4I1QA 2V0OA 4KIKA 2ND1A 2ND0A 3DPOA 2QFFA 3DYTA 1YYWA 3EJSA 4EZVA 2FICA 5FLEX 1YYOA 4UDYX 5KBPA 4UDXX 3LVTA 2EFLA 1I4TA 2OBMA 4FZSA 3L3OM 4EZTA 1R33A 3A98A 2F18A 3I2WA 4M30A 4EZPA 1TQSA 3FD9A 4AZHA 3T46A 3BVVA 3G9GA 4AZCA 3RV0A 4R5LA 1WDZA 4JWIA 2PY6A 3VEBA 1U00A 5FIGA 4BNEA 2Z0NA 2D4CA 4FZOA 3F7WA 1JQKA 1DKZA 1GNLA 1QX1A 2YL9A 2Q13A 3EJQA 4AZIA 4EZZA 1QWUA 2F7RA 3QNIA 3O2RB 2RT6A 2YL6A 3ERCC 3KAWA 3BLBA 4EZOA 4H6IA 1O0WA 3EJRA 4IWPA 2X3WA 3DX1A 1TQUA 3VEAA 2JNKA 4H6HA 3QE6A 2WYHA 1SU8A 3QWEA 3KDRA 4F01A 4D8JA 3O3NB 3CV5A 4R5GA 2PMRA 4G6QA 2MI7A 4IWOA 4JWEA 3D2FA 3BUDA 1O7DC 3ER8C 3N3WA 2RAKA 4HR1A 4DCNC 2NUEA 2Q12A 4JNFA 1I49A 2FYVA 2YLLA 3SOGA 2EX3B 3VKHA 3QA8A 3T49A
chains in the Genus database with same CATH topology
1OA1A 2GSLA 3A98A 4NPHA 1SU6A 3T48A 3O3OB 4M30A 4EZPA 4IM2A 4JLCA 4M0MA 3FD9A 2EB1A 3T46A 2NUGA 4JNEA 2FFLA 3RV0A 4R5LA 4HYBA 4JN4A 3UITA 2LM0A 4JWIA 2PY6A 3B51X 2NUFA 3T47A 4IM3A 2Z8YA 3VEBA 4HY9A 1U00A 5FIGA 4EZSA 1E9VA 2GA9D 3OHXM 3I01A 3C7NA 3F7WA 1GN9A 2YI9A 4EZWA 4JL9A 3GI7A 3KAVA 4E81A 2X5CA 2YIVX 5TKYA 2QXLA 1JQKA 1DKZA 1GNLA 2NCZA 3O3MB 1SUFA 2OBLA 1JFZA 2A11A 4EZUA 1RC5A 4EZQA 4OUNA 3T4AG 3C4BA 1I4SA 3OWGA 2YIAA 4PO2A 3C4TA 2EZ6A 1MJGA 3DPQA 4EZZA 2YIBA 1GNTA 4EZXA 1U61A 1RC7A 2WINM 2RT6A 3O2RB 4EZNA 3ERCC 2QVWA 3KAWA 1OA0A 4EZOA 4FM3A 4IM0A 1ZYLA 4H6IA 3ER9B 1O0WA 4B9QA 4KIKB 1DKXA 3B53X 4F00A 4IWPA 3D2EA 2KHOA 3VEAA 4H6HA 4EZYA 1SU7A 4HR1B 4IWQA 1YZ9A 1E1DA 3ZEDA 1UPXA 4EZRA 2JNSA 1YYKA 1SU8A 1W9MA 4R5JA 3KDRA 4M2ZA 4JWDA 4F01A 5E84A 4D8JA 4R5KA 3QNJA 3O2RA 3O3NB 4IW0A 1E2UA 2YI8A 4R5GA 2GAFD 4G6QA 4IWOA 3B52X 4KIKA 4JWEA 3D2FA 2ND1A 2ND0A 3DPOA 2QFFA 1YYWA 1DKYA 1OAOA 4R5IA 3ER8C 3N3WA 2EWFA 4HR1A 3RV1A 4EZVA 2NUEA 3I39X 4JNFA 5FLEX 4OOGC 1YYOA 4UDYX 4UDXX 3I04A 4E3CA 4JWCA 3DPPA 2OBMA 2N3KA 3L3OM 2EX3B 3LMFA 3VKHA 4EZTA 3QA8A 3T49A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2QVW A;  2GSL A;  1O0W A;  4M30 A;  1YYW A;  3N3W A;  3RV1 A;  2NUE A;  2EB1 A;  2NUG A;  4OOG C;  1YYO A;  2FFL A;  1JFZ A;  2A11 A;  1YZ9 A;  1RC5 A;  4OUN A;  3RV0 A;  1YYK A;  3C4B A;  1I4S A;  4M2Z A;  3C4T A;  2EZ6 A;  2NUF A;  3O2R A;  1U61 A;  1RC7 A;  3O2R B; 
#chains in the Genus database with same CATH topology
 4AZ5 A;  4NPH A;  1SU6 A;  3O3O B;  3BUB A;  3D50 A;  4IM2 A;  4JLC A;  2D1L A;  3DX4 A;  3OK8 A;  3CZN A;  3UIT A;  2OO2 A;  4IM3 A;  4HY9 A;  4EZS A;  2GA9 D;  3I01 A;  3C7N A;  4EZW A;  3CZS A;  3DDG A;  2QXL A;  2YL8 A;  2YKT A;  3HAH A;  2NCZ A;  1SUF A;  1JFZ A;  2A11 A;  2RAJ A;  4OUN A;  3C4B A;  2X3X A;  3OWG A;  5C5B B;  3DPQ A;  2EFK A;  2YIB A;  3Q84 A;  1GNT A;  1ZYL A;  4B9Q A;  4KIK B;  1ZTD A;  4F00 A;  1TQT A;  4AZ6 A;  1TQW A;  2KHO A;  3HAI A;  3DX0 A;  4IWQ A;  1E1D A;  3BUQ A;  3EJU A;  1W9M A;  5E84 A;  3QNJ A;  2YLA A;  4IW0 A;  1E2U A;  3BUP A;  1R34 A;  2F7O A;  2GAF D;  1I4D A;  1DKY A;  1OAO A;  2EWF A;  2YL5 A;  3I39 X;  3I04 A;  2QKW A;  1I4L A;  4E3C A;  3DPP A;  3D52 A;  4NSW A;  4AZC B;  2N3K A;  3ABH A;  1X03 A;  3DX3 A;  3SYV A;  3T48 A;  3CKD A;  2F1A A;  1R5E A;  3RPM A;  2EB1 A;  2FFL A;  1X04 A;  1URU A;  4HYB A;  4H8S A;  2LM0 A;  3B51 X;  2NUF A;  2Z0V A;  3D4Z A;  4FZP A;  2Z8Y A;  3CAZ A;  1E9V A;  1QWN A;  3D51 A;  1GN9 A;  2YI9 A;  2O0I 1;  3KAV A;  4E81 A;  4AZ7 A;  2X5C A;  2YIV X;  1LQ7 A;  3BVU A;  2OBL A;  2OW7 A;  2Z0O A;  3BVT A;  4EZQ A;  2YIA A;  4PO2 A;  4NQI A;  1MJG A;  2F7Q A;  2LXY A;  3EJT A;  4EZX A;  1RC7 A;  2C08 A;  2WIN M;  4EZN A;  2ZXQ A;  3BUI A;  4IM0 A;  3PLT A;  3D4Y A;  1DKX A;  3B53 X;  3M3W A;  4EZY A;  1SU7 A;  4HR1 B;  3ZED A;  4AKV A;  4DYL A;  1UPX A;  4EZR A;  2JNS A;  1YYK A;  4M2Z A;  4AZB A;  1Y2O A;  3O2R A;  3CVR A;  2YI8 A;  3BVX A;  3B52 X;  3HAJ A;  2ALW A;  4R5I A;  1TQV A;  3RV1 A;  4AZG A;  4OOG C;  3DDF A;  2F1B A;  2OW6 A;  4JWC A;  3ACO A;  3LLL A;  1O7D B;  3BVW A;  3LMF A;  3DX2 A;  1OA1 A;  3EJP A;  2GSL A;  4M0M A;  2OZN B;  1YWM A;  2X3V A;  2NUG A;  4JNE A;  1HXK A;  4JN4 A;  3T47 A;  4ATM A;  3OHX M;  1ZWW A;  4JL9 A;  3GI7 A;  5TKY A;  2RAI A;  3O3M B;  2WYI A;  4EZU A;  1RC5 A;  3T4A G;  1I4S A;  3C4T A;  2EZ6 A;  3L3P A;  1U61 A;  2QVW A;  1PS3 A;  4WPE A;  2F7P A;  1OA0 A;  4FM3 A;  4WPC A;  3ER9 B;  1HWW A;  3D2E A;  4AVM A;  2GF4 A;  1YZ9 A;  2ELB A;  5C5B A;  4R5J A;  1HTY A;  4JWD A;  4R5K A;  3Q0K A;  4I1Q A;  2V0O A;  4KIK A;  2ND1 A;  2ND0 A;  3DPO A;  2QFF A;  3DYT A;  1YYW A;  3EJS A;  4EZV A;  2FIC A;  5FLE X;  1YYO A;  4UDY X;  5KBP A;  4UDX X;  3LVT A;  2EFL A;  1I4T A;  2OBM A;  4FZS A;  3L3O M;  4EZT A;  1R33 A;  3A98 A;  2F18 A;  3I2W A;  4M30 A;  4EZP A;  1TQS A;  3FD9 A;  4AZH A;  3T46 A;  3BVV A;  3G9G A;  4AZC A;  3RV0 A;  4R5L A;  1WDZ A;  4JWI A;  2PY6 A;  3VEB A;  1U00 A;  5FIG A;  4BNE A;  2Z0N A;  2D4C A;  4FZO A;  3F7W A;  1JQK A;  1DKZ A;  1GNL A;  1QX1 A;  2YL9 A;  2Q13 A;  3EJQ A;  4AZI A;  4EZZ A;  1QWU A;  2F7R A;  3QNI A;  3O2R B;  2RT6 A;  2YL6 A;  3ERC C;  3KAW A;  3BLB A;  4EZO A;  4H6I A;  1O0W A;  3EJR A;  4IWP A;  2X3W A;  3DX1 A;  1TQU A;  3VEA A;  2JNK A;  4H6H A;  3QE6 A;  2WYH A;  1SU8 A;  3QWE A;  3KDR A;  4F01 A;  4D8J A;  3O3N B;  3CV5 A;  4R5G A;  2PMR A;  4G6Q A;  2MI7 A;  4IWO A;  4JWE A;  3D2F A;  3BUD A;  1O7D C;  3ER8 C;  3N3W A;  2RAK A;  4HR1 A;  4DCN C;  2NUE A;  2Q12 A;  4JNF A;  1I49 A;  2FYV A;  2YLL A;  3SOG A;  2EX3 B;  3VKH A;  3QA8 A;  3T49 A; 
#chains in the Genus database with same CATH homology
 1OA1 A;  2GSL A;  3A98 A;  4NPH A;  1SU6 A;  3T48 A;  3O3O B;  4M30 A;  4EZP A;  4IM2 A;  4JLC A;  4M0M A;  3FD9 A;  2EB1 A;  3T46 A;  2NUG A;  4JNE A;  2FFL A;  3RV0 A;  4R5L A;  4HYB A;  4JN4 A;  3UIT A;  2LM0 A;  4JWI A;  2PY6 A;  3B51 X;  2NUF A;  3T47 A;  4IM3 A;  2Z8Y A;  3VEB A;  4HY9 A;  1U00 A;  5FIG A;  4EZS A;  1E9V A;  2GA9 D;  3OHX M;  3I01 A;  3C7N A;  3F7W A;  1GN9 A;  2YI9 A;  4EZW A;  4JL9 A;  3GI7 A;  3KAV A;  4E81 A;  2X5C A;  2YIV X;  5TKY A;  2QXL A;  1JQK A;  1DKZ A;  1GNL A;  2NCZ A;  3O3M B;  1SUF A;  2OBL A;  1JFZ A;  2A11 A;  4EZU A;  1RC5 A;  4EZQ A;  4OUN A;  3T4A G;  3C4B A;  1I4S A;  3OWG A;  2YIA A;  4PO2 A;  3C4T A;  2EZ6 A;  1MJG A;  3DPQ A;  4EZZ A;  2YIB A;  1GNT A;  4EZX A;  1U61 A;  1RC7 A;  2WIN M;  2RT6 A;  3O2R B;  4EZN A;  3ERC C;  2QVW A;  3KAW A;  1OA0 A;  4EZO A;  4FM3 A;  4IM0 A;  1ZYL A;  4H6I A;  3ER9 B;  1O0W A;  4B9Q A;  4KIK B;  1DKX A;  3B53 X;  4F00 A;  4IWP A;  3D2E A;  2KHO A;  3VEA A;  4H6H A;  4EZY A;  1SU7 A;  4HR1 B;  4IWQ A;  1YZ9 A;  1E1D A;  3ZED A;  1UPX A;  4EZR A;  2JNS A;  1YYK A;  1SU8 A;  1W9M A;  4R5J A;  3KDR A;  4M2Z A;  4JWD A;  4F01 A;  5E84 A;  4D8J A;  4R5K A;  3QNJ A;  3O2R A;  3O3N B;  4IW0 A;  1E2U A;  2YI8 A;  4R5G A;  2GAF D;  4G6Q A;  4IWO A;  3B52 X;  4KIK A;  4JWE A;  3D2F A;  2ND1 A;  2ND0 A;  3DPO A;  2QFF A;  1YYW A;  1DKY A;  1OAO A;  4R5I A;  3ER8 C;  3N3W A;  2EWF A;  4HR1 A;  3RV1 A;  4EZV A;  2NUE A;  3I39 X;  4JNF A;  5FLE X;  4OOG C;  1YYO A;  4UDY X;  4UDX X;  3I04 A;  4E3C A;  4JWC A;  3DPP A;  2OBM A;  2N3K A;  3L3O M;  2EX3 B;  3LMF A;  3VKH A;  4EZT A;  3QA8 A;  3T49 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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