3TEKA

Thermodbp: a non-canonical single-stranded dna binding protein with a novel structure and mechanism
Total Genus 40
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
139
structure length
139
Chain Sequence
RGEVRSELITKGEKKLVLIRWNTGKTSAGRLFGRYGPGGRPEFFKLLFGAVAGSLREQFGPDGENIFNRIRDSEKFRETSRELFDGLKKWFFEEAVPRYNLERGDIFMISTELVLDPDTGELLWNRDKTQLIYWIRSDR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Dna binding protein
molecule keywords ThermoDBP-single stranded DNA binding protein
publication title Displacement of the canonical single-stranded DNA-binding protein in the Thermoproteales.
pubmed doi rcsb
source organism Thermoproteus tenax
total genus 40
structure length 139
sequence length 139
chains with identical sequence B
ec nomenclature
pdb deposition date 2011-08-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF18361 ssDBP_DBD Single stranded DNA-binding protein ss DNA binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.470.50 Alpha Beta 2-Layer Sandwich D-amino Acid Aminotransferase; Chain A, domain 1 D-amino Acid Aminotransferase; Chain A, domain 1 3tekA00
3TEKA
chains in the Genus database with same CATH superfamily
1A0GA 5DISC 1KJIA 1KTAA 4FFMA 3GLKA 3CSWA 3K5IA 5KX5F 2VR1A 2R86A 3KALA 1ULZA 3UQ8A 1A48A 4O7SA 2YRXA 1EKVA 5GONF 3N8DA 4XYMB 3Q1KA 5BWTA 1E4EA 4TM5A 1TAEA 1VS0A 1WRVA 4YAKB 1ET0A 1I2LA 2HHFA 3DTGA 3R5FA 4IWYA 2C00A 2V5AA 1I1KA 3ETJA 4UCOA 1M0WA 1B6RA 1PK8A 2YL2A 4EEQA 4O83A 2OWOA 2R87A 1FVIA 1JLLB 1Z2OX 5FR9A 4PZ8A 5DGHA 4O7NA 5D1OA 1C30A 5C1OA 3W1BA 3WWJA 3T9BA 5BWVA 3KAJA 2COGA 4O86A 2FPIB 3TIIA 5CB4F 2DIKA 1EZ1A 4MV8A 2W6ZA 2GQRA 4E4TA 4UFZA 2EJ0A 4O7TA 3W1GA 3T9CA 3TY5A 3RV4A 1B6SA 2W6MA 4NZOA 2YYAA 4Q4CA 2YZLA 4FFRA 2W70A 4NZNA 5BPHA 4E6NA 3WO1A 4TV8F 3V4SA 5LXTF 3AW8A 4IWXA 3LULA 4L1KA 4CMDA 4PZ7A 2ZDHA 2QF7A 1IOWA 1EUCB 2COIA 1W93A 3HBLA 3VPCA 4EFEA 5KS8A 4FGRA 4HN2A 4O2BF 2COJA 4O4LF 2YRWA 4Q4DA 5I5VA 2A1HA 5BPFA 5CE8A 4DAAA 1G2WA 4JXUA 3HB9A 2DAAA 5I60A 3RTXA 5BWRA 3HT5A 3JSNA 2CNQA 5I5SA 3KAKA 5JVDF 5K3WA 2HVQA 4IHJF 5CA0F 4O7VA 1KJJA 4MV9A 3JZIA 5I5YA 4O2AF 5CAEB 3N6RA 3ORRA 3RUPA 1KC7A 1KEEA 2HVRA 2YZMA 2EJ3A 3TY9A 1SCUB 4UCVA 2FPGB 4IZOA 1I1LA 3GJXB 2V59A 5LP6F 2DZDA 1EKFA 5HV6A 1EHIA 4O7RA 3ETHA 3NC0B 3T54A 5I5UA 1EKPA 3L2PA 1OBDA 1XDNA 4WHXA 4RZQA 4ZQIA 4CC6A 2QB5A 2R85A 4CC5A 3VNNA 5EZYF 3U9TA 4C5AA 1E4EB 2YWVA 1AUVA 3TY8A 1GSHA 3E5NA 4NYEA 5HBRB 1BNCA 2DABA 2PBZA 2XD4A 2HG8A 4NZMA 2HGWA 2YZGA 3JZ6A 4MV1A 1IYDA 4O7ZA 1VKZA 5I5WA 5FPRA 2I8CA 4MV6A 4PZ6A 5BYBA 3W5OA 4UCSA 5D8DA 2VQDA 3TINA 3LP8A 3KYHC 5BMVF 3BACA 2CNVA 2YZNA 5BYAA 2ZDGA 5CR5A 5JVLA 1V9PA 2R82A 1CKNB 2WYOA 2VUGA 5DMXA 3MWEA 3TEKA 4O84A 1CE8A 4YB8B 5C1PA 3UYYA 5H80A 4EG0A 2FPPB 4TV9F 3OUZA 4XYLB 1PX2A 3R5HA 2YS7A 2EJ2A 3RFCA 3DAAA 2GLTA 1KUTA 3BA8A 4PBCA 4C5BA 3Q2OA 3VPDA 3JRXA 3RR5A 2FB9A 2W6OA 1WR2A 2Q2UA 1UC9A 3T9DA 1DV2A 4UCTA 1DIKA 1KBLA 3G8CA 4DLKA 5K2MA 1JDEA 5BWUA 5BWWA 5BWXA 4ZOLF 3SGIA 5I5TA 1KT8A 2CZGA 4O82A 1XK5A 2P0AA 4CKBA 1VBHA 4O4IF 1GLVA 4QSHA 2X0SA 4YJ3F 1DAAA 4YJ2F 1C3OA 4FU0A 3R9RA 5I5XA 3QWUA 4I50F 5LOVF 5J2TF 2XCLA 3T9AA 4UUGA 1A9XA 4XX0B 4O4HF 2CNUA 1A0IA 3VMMA 1EUDB 2HIXA 2GPWA 4I4TF 2R7MA 3S24A 3R23A 2Q7DA 2HVSA 2NU6B 2OLSA 2GPSA 4EQ5A 2ZDQA 4MA0A 2Y4RA 4GLXA 4C5CA 2R7LA 1IYEA 2HDKA 2NU9B 1P16A 3K3PA 4CE5A 4HNUA 4IIJF 3TQTA 2X5RA 2HIVA 1BXRA 3DTFA 4GLWA 2HJWA 2QK4A 4FFOA 1T36A 2V58A 4O81A 3WWIA 5I47A 2HHFB 3OUUA 3G8DA 4TVIA 2NUAB 3NBYB 4WBNF 4DRFA 2W6NA 4HR7A 4HNTA 1A3GA 4YBZB 2DLNA 5KKNB 3R5XA 4UCRA 3VOTA 3JSLA 4EFBA 3TIGA 1Z2PX 5D1OB 5LYJF 3BA9A 4EGQA 3LQSA 5C8YF 3U9SA 4O4JF 1JDBB 4XZ3B 4ZHQF 1CKMA 3UFXB 3V4ZA 3GDEA 2ZGIA 3WO0A 4O7LA 3T7AA 4O7YA 3NBZB 3T9EA 3U54A 2R7KA 1W96A 2HGXA 4FFNA 3LWBA 3RV3A 5D1PA 3BABA 2W71A 3CEBA 3UZOA 2EIYA 2R84A 4DQNA 1M6VA 1DV1A 2SCUB 2R7NA 1CS0A 1I7NA 2Q2TA 3QFFA 1AUXA 4CHIA 4MV3A 4LH7A 4O7WA 3GB8B 2VPQA 2DWCA 2CFMA 3GIDA 1EYZA 4YAJB 3VPBA 1I1MA 2HGSA 1M0TA 2J9GA 3MWDA 2GQSA 2Z02A 4K6NA 3TW6A 5DGIA 1KJQA 1P8LA 1CKNA 4CKCA 1GSAA 5FPOA 3DF7A 3PN1A 3T9FA 4MV4A 5JQWA 5DAAA 1ZAUA 4CMFA 1I2KA 4MAMA 4MV7A 1IOVA 1VBGA 3I12A 4FFLA 3K5HA 3KREA 2FP4B 1S68A 2I87A 4FE2A 2NU7B 1GGOA 1Z2NX 2PVPA 5CA1F 2YW2A 4LH6A 3WWHA 1KJ9A 3WNZA 3NUAA 1CKOA 3UZBA 3BG5A 5IYZF 3ORQA 2YS6A 3SE7A 5JH7F 1X9NA 4M0JA 4CKEA 4Y8VB 3TW7A 2I80A 5HNEA 5LA6F 4ZI7F 1UC8A 1I7LA 3JZFA 1GSOA 4HQ6A 4ME6A 5FNVF 2IP4A 4I55F 3AX6A 4TUYF 3VA7A 3MJFA 4FFPA 5E25A 2ABJA 3BAAA 3QQMA 1TA8A 3PFFA 2NU8B 5JQGF 2W6QA 1KJ8A 4MA5A 3JRWA 2ODTX 4DIMA 4M9UA 2Z04A 1CQJB 3U0GA 1CQIB 3HO8A 3T99A 4HNVA 1B04A 4UCUA 1OBGA 3U55A 2W6PA 2PN1A 5J2UF 4RCNA 5CM0A 3SNOA 4EGJA 1DGSA 1JKJB
chains in the Genus database with same CATH topology
1A0GA 1KT8A 5I5YA 1KTAA 4CHIA 3CSWA 4CKBA 2EJ3A 1DAAA 1I1LA 1EKVA 5I5XA 1I1MA 5BWTA 4TM5A 1EKFA 1WRVA 3T54A 5I5UA 1ET0A 4K6NA 1I2LA 3T9AA 1EKPA 2HHFA 3DTGA 5DGIA 4IWYA 4UUGA 4CKCA 4WHXA 3T9FA 1I1KA 2QB5A 5DAAA 1ZAUA 4CMFA 1I2KA 5FR9A 5DGHA 2DABA 2Q7DA 2HG8A 4NZMA 2HGWA 3JZ6A 3WWJA 3T9BA 1IYDA 5BWVA 2Y4RA 5I5WA 2COGA 1IYEA 2HDKA 3WWHA 5BYBA 4CE5A 2X5RA 3UZBA 3DTFA 4GLWA 3BACA 5BYAA 5CR5A 2EJ0A 4M0JA 4CKEA 3T9CA 3WWIA 3TW7A 5I47A 2HHFB 4TVIA 5HNEA 1UC8A 4NZOA 4Q4CA 3TEKA 4NZNA 3UYYA 1A3GA 4IWXA 3LULA 4CMDA 2EJ2A 5E25A 3QQMA 3DAAA 2ABJA 3LQSA 3PFFA 2COIA 4PBCA 2ODTX 3VPDA 5KS8A 2ZGIA 3U0GA 4HN2A 2COJA 4Q4DA 3T7AA 3T9EA 5I5VA 1UC9A 2A1HA 3T99A 5CE8A 3T9DA 4DAAA 1G2WA 4JXUA 2HGXA 2DAAA 5I60A 5BWRA 3HT5A 5I5SA 3CEBA 3UZOA 5K3WA 5K2MA 4RCNA 5BWUA 2EIYA 5CM0A 4DQNA 5BWWA 5BWXA 3SGIA 5I5TA 3SNOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3TEK A; 
#chains in the Genus database with same CATH topology
 1A0G A;  5DIS C;  1KJI A;  1KTA A;  4FFM A;  3GLK A;  3CSW A;  3K5I A;  5KX5 F;  2VR1 A;  2R86 A;  3KAL A;  1ULZ A;  3UQ8 A;  1A48 A;  4O7S A;  2YRX A;  1EKV A;  5GON F;  3N8D A;  4XYM B;  3Q1K A;  5BWT A;  1E4E A;  4TM5 A;  1TAE A;  1VS0 A;  1WRV A;  4YAK B;  1ET0 A;  1I2L A;  2HHF A;  3DTG A;  3R5F A;  4IWY A;  2C00 A;  2V5A A;  1I1K A;  3ETJ A;  4UCO A;  1M0W A;  1B6R A;  1PK8 A;  2YL2 A;  4EEQ A;  4O83 A;  2OWO A;  2R87 A;  1FVI A;  1JLL B;  1Z2O X;  5FR9 A;  4PZ8 A;  5DGH A;  4O7N A;  5D1O A;  1C30 A;  5C1O A;  3W1B A;  3WWJ A;  3T9B A;  5BWV A;  3KAJ A;  2COG A;  4O86 A;  2FPI B;  3TII A;  5CB4 F;  2DIK A;  1EZ1 A;  4MV8 A;  2W6Z A;  2GQR A;  4E4T A;  4UFZ A;  2EJ0 A;  4O7T A;  3W1G A;  3T9C A;  3TY5 A;  3RV4 A;  1B6S A;  2W6M A;  4NZO A;  2YYA A;  4Q4C A;  2YZL A;  4FFR A;  2W70 A;  4NZN A;  5BPH A;  4E6N A;  3WO1 A;  4TV8 F;  3V4S A;  5LXT F;  3AW8 A;  4IWX A;  3LUL A;  4L1K A;  4CMD A;  4PZ7 A;  2ZDH A;  2QF7 A;  1IOW A;  1EUC B;  2COI A;  1W93 A;  3HBL A;  3VPC A;  4EFE A;  5KS8 A;  4FGR A;  4HN2 A;  4O2B F;  2COJ A;  4O4L F;  2YRW A;  4Q4D A;  5I5V A;  2A1H A;  5BPF A;  5CE8 A;  4DAA A;  1G2W A;  4JXU A;  3HB9 A;  2DAA A;  5I60 A;  3RTX A;  5BWR A;  3HT5 A;  3JSN A;  2CNQ A;  5I5S A;  3KAK A;  5JVD F;  5K3W A;  2HVQ A;  4IHJ F;  5CA0 F;  4O7V A;  1KJJ A;  4MV9 A;  3JZI A;  5I5Y A;  4O2A F;  5CAE B;  3N6R A;  3ORR A;  3RUP A;  1KC7 A;  1KEE A;  2HVR A;  2YZM A;  2EJ3 A;  3TY9 A;  1SCU B;  4UCV A;  2FPG B;  4IZO A;  1I1L A;  3GJX B;  2V59 A;  5LP6 F;  2DZD A;  1EKF A;  5HV6 A;  1EHI A;  4O7R A;  3ETH A;  3NC0 B;  3T54 A;  5I5U A;  1EKP A;  3L2P A;  1OBD A;  1XDN A;  4WHX A;  4RZQ A;  4ZQI A;  4CC6 A;  2QB5 A;  2R85 A;  4CC5 A;  3VNN A;  5EZY F;  3U9T A;  4C5A A;  1E4E B;  2YWV A;  1AUV A;  3TY8 A;  1GSH A;  3E5N A;  4NYE A;  5HBR B;  1BNC A;  2DAB A;  2PBZ A;  2XD4 A;  2HG8 A;  4NZM A;  2HGW A;  2YZG A;  3JZ6 A;  4MV1 A;  1IYD A;  4O7Z A;  1VKZ A;  5I5W A;  5FPR A;  2I8C A;  4MV6 A;  4PZ6 A;  5BYB A;  3W5O A;  4UCS A;  5D8D A;  2VQD A;  3TIN A;  3LP8 A;  3KYH C;  5BMV F;  3BAC A;  2CNV A;  2YZN A;  5BYA A;  2ZDG A;  5CR5 A;  5JVL A;  1V9P A;  2R82 A;  1CKN B;  2WYO A;  2VUG A;  5DMX A;  3MWE A;  3TEK A;  4O84 A;  1CE8 A;  4YB8 B;  5C1P A;  3UYY A;  5H80 A;  4EG0 A;  2FPP B;  4TV9 F;  3OUZ A;  4XYL B;  1PX2 A;  3R5H A;  2YS7 A;  2EJ2 A;  3RFC A;  3DAA A;  2GLT A;  1KUT A;  3BA8 A;  4PBC A;  4C5B A;  3Q2O A;  3VPD A;  3JRX A;  3RR5 A;  2FB9 A;  2W6O A;  1WR2 A;  2Q2U A;  1UC9 A;  3T9D A;  1DV2 A;  4UCT A;  1DIK A;  1KBL A;  3G8C A;  4DLK A;  5K2M A;  1JDE A;  5BWU A;  5BWW A;  5BWX A;  4ZOL F;  3SGI A;  5I5T A;  1KT8 A;  2CZG A;  4O82 A;  1XK5 A;  2P0A A;  4CKB A;  1VBH A;  4O4I F;  1GLV A;  4QSH A;  2X0S A;  4YJ3 F;  1DAA A;  4YJ2 F;  1C3O A;  4FU0 A;  3R9R A;  5I5X A;  3QWU A;  4I50 F;  5LOV F;  5J2T F;  2XCL A;  3T9A A;  4UUG A;  1A9X A;  4XX0 B;  4O4H F;  2CNU A;  1A0I A;  3VMM A;  1EUD B;  2HIX A;  2GPW A;  4I4T F;  2R7M A;  3S24 A;  3R23 A;  2Q7D A;  2HVS A;  2NU6 B;  2OLS A;  2GPS A;  4EQ5 A;  2ZDQ A;  4MA0 A;  2Y4R A;  4GLX A;  4C5C A;  2R7L A;  1IYE A;  2HDK A;  2NU9 B;  1P16 A;  3K3P A;  4CE5 A;  4HNU A;  4IIJ F;  3TQT A;  2X5R A;  2HIV A;  1BXR A;  3DTF A;  4GLW A;  2HJW A;  2QK4 A;  4FFO A;  1T36 A;  2V58 A;  4O81 A;  3WWI A;  5I47 A;  2HHF B;  3OUU A;  3G8D A;  4TVI A;  2NUA B;  3NBY B;  4WBN F;  4DRF A;  2W6N A;  4HR7 A;  4HNT A;  1A3G A;  4YBZ B;  2DLN A;  5KKN B;  3R5X A;  4UCR A;  3VOT A;  3JSL A;  4EFB A;  3TIG A;  1Z2P X;  5D1O B;  5LYJ F;  3BA9 A;  4EGQ A;  3LQS A;  5C8Y F;  3U9S A;  4O4J F;  1JDB B;  4XZ3 B;  4ZHQ F;  1CKM A;  3UFX B;  3V4Z A;  3GDE A;  2ZGI A;  3WO0 A;  4O7L A;  3T7A A;  4O7Y A;  3NBZ B;  3T9E A;  3U54 A;  2R7K A;  1W96 A;  2HGX A;  4FFN A;  3LWB A;  3RV3 A;  5D1P A;  3BAB A;  2W71 A;  3CEB A;  3UZO A;  2EIY A;  2R84 A;  4DQN A;  1M6V A;  1DV1 A;  2SCU B;  2R7N A;  1CS0 A;  1I7N A;  2Q2T A;  3QFF A;  1AUX A;  4CHI A;  4MV3 A;  4LH7 A;  4O7W A;  3GB8 B;  2VPQ A;  2DWC A;  2CFM A;  3GID A;  1EYZ A;  4YAJ B;  3VPB A;  1I1M A;  2HGS A;  1M0T A;  2J9G A;  3MWD A;  2GQS A;  2Z02 A;  4K6N A;  3TW6 A;  5DGI A;  1KJQ A;  1P8L A;  1CKN A;  4CKC A;  1GSA A;  5FPO A;  3DF7 A;  3PN1 A;  3T9F A;  4MV4 A;  5JQW A;  5DAA A;  1ZAU A;  4CMF A;  1I2K A;  4MAM A;  4MV7 A;  1IOV A;  1VBG A;  3I12 A;  4FFL A;  3K5H A;  3KRE A;  2FP4 B;  1S68 A;  2I87 A;  4FE2 A;  2NU7 B;  1GGO A;  1Z2N X;  2PVP A;  5CA1 F;  2YW2 A;  4LH6 A;  3WWH A;  1KJ9 A;  3WNZ A;  3NUA A;  1CKO A;  3UZB A;  3BG5 A;  5IYZ F;  3ORQ A;  2YS6 A;  3SE7 A;  5JH7 F;  1X9N A;  4M0J A;  4CKE A;  4Y8V B;  3TW7 A;  2I80 A;  5HNE A;  5LA6 F;  4ZI7 F;  1UC8 A;  1I7L A;  3JZF A;  1GSO A;  4HQ6 A;  4ME6 A;  5FNV F;  2IP4 A;  4I55 F;  3AX6 A;  4TUY F;  3VA7 A;  3MJF A;  4FFP A;  5E25 A;  2ABJ A;  3BAA A;  3QQM A;  1TA8 A;  3PFF A;  2NU8 B;  5JQG F;  2W6Q A;  1KJ8 A;  4MA5 A;  3JRW A;  2ODT X;  4DIM A;  4M9U A;  2Z04 A;  1CQJ B;  3U0G A;  1CQI B;  3HO8 A;  3T99 A;  4HNV A;  1B04 A;  4UCU A;  1OBG A;  3U55 A;  2W6P A;  2PN1 A;  5J2U F;  4RCN A;  5CM0 A;  3SNO A;  4EGJ A;  1DGS A;  1JKJ B; 
#chains in the Genus database with same CATH homology
 1A0G A;  1KT8 A;  5I5Y A;  1KTA A;  4CHI A;  3CSW A;  4CKB A;  2EJ3 A;  1DAA A;  1I1L A;  1EKV A;  5I5X A;  1I1M A;  5BWT A;  4TM5 A;  1EKF A;  1WRV A;  3T54 A;  5I5U A;  1ET0 A;  4K6N A;  1I2L A;  3T9A A;  1EKP A;  2HHF A;  3DTG A;  5DGI A;  4IWY A;  4UUG A;  4CKC A;  4WHX A;  3T9F A;  1I1K A;  2QB5 A;  5DAA A;  1ZAU A;  4CMF A;  1I2K A;  5FR9 A;  5DGH A;  2DAB A;  2Q7D A;  2HG8 A;  4NZM A;  2HGW A;  3JZ6 A;  3WWJ A;  3T9B A;  1IYD A;  5BWV A;  2Y4R A;  5I5W A;  2COG A;  1IYE A;  2HDK A;  3WWH A;  5BYB A;  4CE5 A;  2X5R A;  3UZB A;  3DTF A;  4GLW A;  3BAC A;  5BYA A;  5CR5 A;  2EJ0 A;  4M0J A;  4CKE A;  3T9C A;  3WWI A;  3TW7 A;  5I47 A;  2HHF B;  4TVI A;  5HNE A;  1UC8 A;  4NZO A;  4Q4C A;  3TEK A;  4NZN A;  3UYY A;  1A3G A;  4IWX A;  3LUL A;  4CMD A;  2EJ2 A;  5E25 A;  3QQM A;  3DAA A;  2ABJ A;  3LQS A;  3PFF A;  2COI A;  4PBC A;  2ODT X;  3VPD A;  5KS8 A;  2ZGI A;  3U0G A;  4HN2 A;  2COJ A;  4Q4D A;  3T7A A;  3T9E A;  5I5V A;  1UC9 A;  2A1H A;  3T99 A;  5CE8 A;  3T9D A;  4DAA A;  1G2W A;  4JXU A;  2HGX A;  2DAA A;  5I60 A;  5BWR A;  3HT5 A;  5I5S A;  3CEB A;  3UZO A;  5K3W A;  5K2M A;  4RCN A;  5BWU A;  2EIY A;  5CM0 A;  4DQN A;  5BWW A;  5BWX A;  3SGI A;  5I5T A;  3SNO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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