3U9BA

Structure of apo-cati
Total Genus 51
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
51
sequence length
216
structure length
216
Chain Sequence
EKKITGYTTVDISQWHRKEHFEAFQSVAQCTYNQTVQLDITAFLKTVKKNKHKFYPAFIHILARLMNAHPEFRMAMKDGELVIWDSVHPCYTVFHEQTETFSSLWSEYHDDFRQFLHIYSQDVACYGENLAYFPKGFIENMFFVSANPWVSFTSFDLNVANMDNFFAPVFTMGKYYTQGDKVLMPLAIQVHHAVCDGFHVGRMLNELQQYCDEWQG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords Chloramphenicol acetyltransferase
publication title The structural basis for substrate versatility of chloramphenicol acetyltransferase CAT(I).
pubmed doi rcsb
source organism Escherichia coli
total genus 51
structure length 216
sequence length 216
chains with identical sequence B, C, D, E, F, G, H, I
ec nomenclature ec 2.3.1.28: Chloramphenicol O-acetyltransferase.
pdb deposition date 2011-10-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00302 CAT Chloramphenicol acetyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 3u9bA00
3B2SA 1EAFA 2VSQA 4G2MA 2II3A 5KJVA 5FALA 2BGHA 4KECA 4KE4A 1CIAA 3L60A 2RKTA 1DPCA 1DPDA 2E1TA 2E1UA 1C4TA 1EAEA 2IHWA 4JN3A 2II5A 1NOCB 1SCZA 2JGPA 2RKVA 5T3EA 2XHGA 1EABA 1Q23A 3FP0A 1EACA 4N72A 5DUAA 1DPBA 4G22A 5DU9A 5FANA 2XR7A 5KJUA 1XL8A 4HVMA 3U9FA 1XMDA 5KJWA 2ZBAA 1QCAA 1E2OA 4CLAA 5KJTA 3B30A 4JN5A 5KJSA 1Q9JA 2E1VA 1EAAA 1PD5A 1CLAA 3CLAA 2II4A 2I9DA 3FOTA 4G0BA 1L5AA 3MAEA 1XMCA 3U9BA 1EADA 1XL7A 2CLAA
chains in the Genus database with same CATH superfamily
1NDFA 3B2SA 1T7OA 2RKTA 1DPDA 4EYWA 1NM8A 2IHWA 2XHGA 4HVMA 3U9FA 1QCAA 1E2OA 3B30A 5KJSA 1Q9JA 2II4A 1XMCA 3U9BA 2FY3A 2H4TA 2FW3A 4G2MA 2II3A 5FALA 4EP9A 2FY5A 4KECA 1DPCA 2E1TA 1Q6XA 5T3EA 2JGPA 2RKVA 1NDIA 1T7NA 5DU9A 1XL8A 1XMDA 2ZBAA 4G22A 2E1VA 1PD5A 1CLAA 2I9DA 1S5OA 1EADA 1EAFA 2VSQA 2BGHA 4KE4A 1CIAA 1T7QA 2E1UA 1C4TA 1EAEA 4JN3A 2II5A 1SCZA 1Q23A 5DUAA 5FANA 2XR7A 2FYOA 5KJUA 5KJWA 5KJTA 4CLAA 2FY4A 1EAAA 1T1UA 4G0BA 3MAEA 1XL7A 2H3PA 1NDBA 5KJVA 2RCUA 4EPHA 3L60A 2FY2A 2H3WA 1NOCB 2H3UA 1EABA 3FP0A 1EACA 4N72A 1DPBA 2DEBA 4JN5A 3CLAA 1L5AA 3FOTA 2CLAA
chains in the Genus database with same CATH topology
3B2SA 1EAFA 2VSQA 4G2MA 2II3A 5KJVA 5FALA 2BGHA 4KECA 4KE4A 1CIAA 3L60A 2RKTA 1DPCA 1DPDA 2E1TA 2E1UA 1C4TA 1EAEA 2IHWA 4JN3A 2II5A 1NOCB 1SCZA 2JGPA 2RKVA 5T3EA 2XHGA 1EABA 1Q23A 3FP0A 1EACA 4N72A 5DUAA 1DPBA 4G22A 5DU9A 5FANA 2XR7A 5KJUA 1XL8A 4HVMA 3U9FA 1XMDA 5KJWA 2ZBAA 1QCAA 1E2OA 4CLAA 5KJTA 3B30A 4JN5A 5KJSA 1Q9JA 2E1VA 1EAAA 1PD5A 1CLAA 3CLAA 2II4A 2I9DA 3FOTA 4G0BA 1L5AA 3MAEA 1XMCA 3U9BA 1EADA 1XL7A 2CLAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3B2S A;  1EAF A;  2VSQ A;  4G2M A;  2II3 A;  5KJV A;  5FAL A;  2BGH A;  4KEC A;  4KE4 A;  1CIA A;  3L60 A;  2RKT A;  1DPC A;  1DPD A;  2E1T A;  2E1U A;  1C4T A;  1EAE A;  2IHW A;  4JN3 A;  2II5 A;  1NOC B;  1SCZ A;  2JGP A;  2RKV A;  5T3E A;  2XHG A;  1EAB A;  1Q23 A;  3FP0 A;  1EAC A;  4N72 A;  5DUA A;  1DPB A;  4G22 A;  5DU9 A;  5FAN A;  2XR7 A;  5KJU A;  1XL8 A;  4HVM A;  3U9F A;  1XMD A;  5KJW A;  2ZBA A;  1QCA A;  1E2O A;  4CLA A;  5KJT A;  3B30 A;  4JN5 A;  5KJS A;  1Q9J A;  2E1V A;  1EAA A;  1PD5 A;  1CLA A;  3CLA A;  2II4 A;  2I9D A;  3FOT A;  4G0B A;  1L5A A;  3MAE A;  1XMC A;  3U9B A;  1EAD A;  1XL7 A;  2CLA A; 
#chains in the Genus database with same CATH topology
 1NDF A;  3B2S A;  1T7O A;  2RKT A;  1DPD A;  4EYW A;  1NM8 A;  2IHW A;  2XHG A;  4HVM A;  3U9F A;  1QCA A;  1E2O A;  3B30 A;  5KJS A;  1Q9J A;  2II4 A;  1XMC A;  3U9B A;  2FY3 A;  2H4T A;  2FW3 A;  4G2M A;  2II3 A;  5FAL A;  4EP9 A;  2FY5 A;  4KEC A;  1DPC A;  2E1T A;  1Q6X A;  5T3E A;  2JGP A;  2RKV A;  1NDI A;  1T7N A;  5DU9 A;  1XL8 A;  1XMD A;  2ZBA A;  4G22 A;  2E1V A;  1PD5 A;  1CLA A;  2I9D A;  1S5O A;  1EAD A;  1EAF A;  2VSQ A;  2BGH A;  4KE4 A;  1CIA A;  1T7Q A;  2E1U A;  1C4T A;  1EAE A;  4JN3 A;  2II5 A;  1SCZ A;  1Q23 A;  5DUA A;  5FAN A;  2XR7 A;  2FYO A;  5KJU A;  5KJW A;  5KJT A;  4CLA A;  2FY4 A;  1EAA A;  1T1U A;  4G0B A;  3MAE A;  1XL7 A;  2H3P A;  1NDB A;  5KJV A;  2RCU A;  4EPH A;  3L60 A;  2FY2 A;  2H3W A;  1NOC B;  2H3U A;  1EAB A;  3FP0 A;  1EAC A;  4N72 A;  1DPB A;  2DEB A;  4JN5 A;  3CLA A;  1L5A A;  3FOT A;  2CLA A; 
#chains in the Genus database with same CATH homology
 3B2S A;  1EAF A;  2VSQ A;  4G2M A;  2II3 A;  5KJV A;  5FAL A;  2BGH A;  4KEC A;  4KE4 A;  1CIA A;  3L60 A;  2RKT A;  1DPC A;  1DPD A;  2E1T A;  2E1U A;  1C4T A;  1EAE A;  2IHW A;  4JN3 A;  2II5 A;  1NOC B;  1SCZ A;  2JGP A;  2RKV A;  5T3E A;  2XHG A;  1EAB A;  1Q23 A;  3FP0 A;  1EAC A;  4N72 A;  5DUA A;  1DPB A;  4G22 A;  5DU9 A;  5FAN A;  2XR7 A;  5KJU A;  1XL8 A;  4HVM A;  3U9F A;  1XMD A;  5KJW A;  2ZBA A;  1QCA A;  1E2O A;  4CLA A;  5KJT A;  3B30 A;  4JN5 A;  5KJS A;  1Q9J A;  2E1V A;  1EAA A;  1PD5 A;  1CLA A;  3CLA A;  2II4 A;  2I9D A;  3FOT A;  4G0B A;  1L5A A;  3MAE A;  1XMC A;  3U9B A;  1EAD A;  1XL7 A;  2CLA A; 
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similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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