3UITA

Overall structure of patj/pals1/mals complex
Total Genus 92
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
92
sequence length
256
structure length
256
Chain Sequence
EKMQVLQVLDRLRGKLQEKGDTTQNEKLSAFYETLKSPLFNQILTLQQSIKQLKGQLSHIPLEVLFQGPVKILEIEDLFSSLKHIQHTLVDSQSQEDISLLLQLVQNKDFQNAFKIHNAITVHMNKASPPFPLISNAQDLAQEVQTVLKPVHHKEGQELTALLNTPHIQALLLAHDKVAEQEMGGGLEVLFQGPALVEPLGLERDVSRAVELLERLQRSGELPPQKLQALQRVLQSRFCSAIREVYEQLYDTLDIT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Cell adhesion
molecule keywords InaD-like protein, MAGUK p55 subfamily member 5, Protein lin
publication title Structure of an L27 domain heterotrimer from cell polarity complex Patj/Pals1/Mals2 reveals mutually independent L27 domain assembly mode
pubmed doi rcsb
source organism Mus musculus
total genus 92
structure length 256
sequence length 256
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2011-11-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09045 L27_2 L27_2
A PF09060 L27_N L27_N
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.460 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Substrate Binding Domain Of Dnak; Chain:A; Domain 2 3uitA02
1.20.1440.360 Mainly Alpha Up-down Bundle de novo design (two linked rop proteins) de novo design (two linked rop proteins) 3uitA01
3UITA
chains in the Genus database with same CATH superfamily
4AKVA 2JB2A 4H8SA 1LQ7A 3BUQA 1E9VA 2PY6A 2JBWA 3BVWA 4F00A 2D1LA 2ND0A 2E8GA 4JCVE 1SJ8A 1HWWA 2EWFA 3I01A 2YFAA 3T47A 2HGKA 4AZ5A 4DYLA 2ALWA 1OA1A 3BUDA 1TQTA 4HR1A 2QGMA 3C7NA 3P23A 2GSCA 3OHXM 4KIKB 4Z7HA 3RV1A 4EZXA 4GXTA 3BVUA 4PL5A 1GNTA 1OAOA 3VEAA 2IP6A 4EZSA 3KP9A 1ZYLA 3I2WA 4O1PA 2BL7A 3EJSA 4NQIA 1GNLA 1X03A 2JNSA 2A2DA 2GA9D 3DX2A 4EZVA 2ELBA 3QA8A 4PL3A 2EX3B 3Q84A 4DWLA 2MI7A 3FVVA 2FICA 4M0MA 4AS3A 2V1CC 1TQWA 2RLDA 2XMXA 3BVVA 2YIAA 4PL4A 3B55A 3JSBA 3BUPA 3DX3A 3OK8A 3DDFA 4YZDA 2PMRA 3D52A 1OA0A 4EZZA 2EFLA 2F7QA 2X3WA 3I9V1 3I04A 2RADA 1R34A 4I1TA 2D4CA 2V6EA 2RT6A 2BL8A 4AS2A 3VEBA 2YI8A 1O7DC 4IW0A 2X3VA 3LJ0A 4HR1B 4IM2A 1JQOA 2FEFA 3OWGA 1PS3A 2O0I1 4EZQA 3DA3A 1SU7A 4IM0A 1TDPA 3CZSA 4OAVB 1DKZA 4I1QA 2LXYA 5C5BA 4FM3A 3D4ZA 1MJGA 1YO7A 2YL9A 4NPHA 4G76A 4HYBA 2Q12A 2YLAA 1O7DB 4YZ9A 3FBVA 4ATMA 4JWDA 3D2EA 3O3MB 3DX0A 4R5IA 2YLLA 3LLLA 1X04A 1SU8A 3LVTA 1W9MA 2Z8YA 1DKYA 1QWNA 3SYVA 2XTQA 2GAFD 5FLEX 3DPOA 4FZPA 2GF4A 3DPPA 4JLCA 1GN9A 3B51X 4IWPA 1TQSA 1TQUA 5E84A 1I49A 2QZGA 2YL6A 4UDYX 4NV2A 2C08A 4AZCA 1E2UA 5KBPA 4E3CA 2RAKA 4NV5A 4JWIA 4PO2A 2ND1A 4R5LA 4AZBA 4Q9VA 2A2CA 3L3PA 2F1BA 2Z0VA 3HAJA 3QE6A 2NCZA 4AZGA 1E1DA 4Z7GA 3ERCC 3CAZA 2YKTA 4EZRA 3FNBA 2RAJA 3HAHA 4OAUC 3O3OB 3D51A 4WPCA 3ABHA 3KAVA 3O3NB 3LJ1A 2ETDA 2ZRRA 1HTYA 3LJ2A 4HEA1 2JAEA 4JWCA 1I4LA 2P22B 4JNFA 1JQKA 3D2FA 3DX4A 1U5KA 1R5EA 2YFBA 3DO9A 2QXLA 2MJFB 1W3SA 2K19A 3QNIA 3ER8C 3EJQA 3F7WA 3QWEA 2YIVX 3T49A 1URUA 3Q8DA 4KIKA 2OBMA 3QNJA 3T46A 4AZHA 3EJTA 4JN4A 1I4DA 4JL9A 4R5KA 4AZ7A 4R5JA 4R5GA 4EZYA 2F66B 2F7RA 4U6RA 3G9GA 3KDRA 4HY9A 4EZPA 4JWEA 2OBLA 1Y2OA 2RAIA 2QKWA 1TQVA 2L1LB 4EZNA 2F7PA 4IWQA 3M3WA 2OO2A 4B9QA 2Z0OA 3BUIA 3HAIA 2Q13A 3SOGA 3A98A 3D50A 3T48A 2QFFA 3BUBA 4H6IA 4HFVA 1UPXA 2F18A 2FUG1 1YWMA 3CV5A 2KKMA 1WDZA 2ZW3A 2FYVA 3EJRA 3KAWA 3BVXA 2YL8A 3VKHA 4E81A 3DDGA 3B52X 4O1OA 3BVTA 3BLBA 4WPEA 3CZNA 3I39X 4G6QA 5C5BB 1QX1A 1SUFA 4IM3A 4F01A 1U00A 3DA4A 3EJUA 3B53X 2WINM 3SDJA 3IAS1 2X5CA 2V0OA 4AZ6A 4NSWA 3CKDA 2YI9A 4D8JA 3DPQA 5LNK1 3T4AG 3ER9B 2Z0NA 4H6HA 4EZOA 4AZIA 2RIOA 4IWOA 5HGIA 3Q0KA 2LM0A 1DKXA 3ACOA 2F6MB 2YIBA 2YL5A 4JNEA 2QSBA 3VA9A 3UITA 4DCNC 4EZTA 2FU2A 3D4YA 3GI7A 3DYTA 4YZCA 2OZNB 3LMFA 2WYIA 2N3KA 3L3OM 3F4MA 3L0IA 3PLTA 4AZCB 1QWUA 2EFKA 1I4TA 3RPMA 4BNEA 2ZXQA 2JNKA 4UDXX 2OW7A 4EZUA 1ZWWA 3FD9A 4FZOA 3RV0A 3EJPA 2OW6A 4AVMA 3DX1A 3IAM1 4FZSA 2WYHA 2JB1A 2X3XA 3CVRA 2CAZB 2JB3A 2F1AA 2KHOA 4EZWA 1HXKA 2F7OA 3AJFA 2XTRA 1R33A 1SU6A 3ZEDA 4G75A 5TKYA 5FIGA
chains in the Genus database with same CATH topology
3KAWA 3OWGA 2ZRRA 2JB2A 3VKHA 3LJ2A 4EZQA 1E9VA 2PY6A 2JAEA 3DA3A 4HEA1 5TKYA 4E81A 4JWCA 1SU7A 4IM0A 4OAVB 4F00A 3B52X 2P22B 1DKZA 4JNFA 4O1OA 2ND0A 1JQKA 3D2FA 2E8GA 3I39X 4G6QA 1SJ8A 4JCVE 4FM3A 1SUFA 3I01A 2EWFA 1U5KA 4IM3A 2YFAA 3T47A 4F01A 1U00A 3DA4A 1MJGA 3B53X 2WINM 1OA1A 3SDJA 1YO7A 2YFBA 3IAS1 4NPHA 4G76A 3DO9A 2QXLA 4HYBA 2X5CA 2MJFB 4HR1A 1W3SA 2K19A 3C7NA 3ER8C 3P23A 3F7WA 4YZ9A 3FBVA 4JWDA 2YI9A 3D2EA 2YIVX 3T49A 3O3MB 4R5IA 4D8JA 5LNK1 3T4AG 3Q8DA 3OHXM 4KIKA 4KIKB 4Z7HA 3RV1A 4EZXA 3ER9B 2OBMA 3QNJA 4H6HA 4EZOA 1GNTA 3T46A 4GXTA 4PL5A 1OAOA 2RIOA 4IWOA 5HGIA 4JN4A 1SU8A 4JL9A 4R5KA 3VEAA 2IP6A 4EZSA 3KP9A 1ZYLA 4R5JA 4R5GA 4EZYA 4O1PA 2LM0A 1DKXA 2F66B 1GNLA 2F6MB 1W9MA 2YIBA 4JNEA 2Z8YA 4U6RA 2JNSA 2A2DA 1DKYA 3VA9A 2XTQA 2GA9D 2GAFD 3KDRA 5FLEX 3DPOA 3UITA 4HY9A 4EZTA 4EZVA 3DPPA 4JLCA 4EZPA 1GN9A 3B51X 3QA8A 3GI7A 4IWPA 4JWEA 4YZCA 3LMFA 5E84A 2OBLA 2EX3B 4PL3A 2N3KA 4DWLA 3L3OM 3F4MA 4UDYX 4NV2A 3L0IA 4M0MA 4AS3A 2L1LB 4EZNA 1E2UA 2V1CC 4E3CA 4NV5A 4IWQA 2XMXA 4UDXX 4JWIA 4PO2A 2YIAA 2ND1A 4R5LA 4B9QA 4Q9VA 2A2CA 4PL4A 4EZUA 3FD9A 3JSBA 3RV0A 2NCZA 4YZDA 1E1DA 3A98A 4Z7GA 1OA0A 3ERCC 3T48A 4EZZA 3IAM1 3I9V1 2QFFA 4EZRA 3I04A 4H6IA 4I1TA 4HFVA 2JB1A 1UPXA 2CAZB 2JB3A 4OAUC 3O3OB 2KHOA 4EZWA 2V6EA 2FUG1 2RT6A 4AS2A 3VEBA 2YI8A 3KAVA 3O3NB 3AJFA 2KKMA 2XTRA 1SU6A 3LJ1A 4IW0A 3LJ0A 3ZEDA 4G75A 4HR1B 3DPQA 4IM2A 5FIGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3UIT A; 
#chains in the Genus database with same CATH topology
 4AKV A;  2JB2 A;  4H8S A;  1LQ7 A;  3BUQ A;  1E9V A;  2PY6 A;  2JBW A;  3BVW A;  4F00 A;  2D1L A;  2ND0 A;  2E8G A;  4JCV E;  1SJ8 A;  1HWW A;  2EWF A;  3I01 A;  2YFA A;  3T47 A;  2HGK A;  4AZ5 A;  4DYL A;  2ALW A;  1OA1 A;  3BUD A;  1TQT A;  4HR1 A;  2QGM A;  3C7N A;  3P23 A;  2GSC A;  3OHX M;  4KIK B;  4Z7H A;  3RV1 A;  4EZX A;  4GXT A;  3BVU A;  4PL5 A;  1GNT A;  1OAO A;  3VEA A;  2IP6 A;  4EZS A;  3KP9 A;  1ZYL A;  3I2W A;  4O1P A;  2BL7 A;  3EJS A;  4NQI A;  1GNL A;  1X03 A;  2JNS A;  2A2D A;  2GA9 D;  3DX2 A;  4EZV A;  2ELB A;  3QA8 A;  4PL3 A;  2EX3 B;  3Q84 A;  4DWL A;  2MI7 A;  3FVV A;  2FIC A;  4M0M A;  4AS3 A;  2V1C C;  1TQW A;  2RLD A;  2XMX A;  3BVV A;  2YIA A;  4PL4 A;  3B55 A;  3JSB A;  3BUP A;  3DX3 A;  3OK8 A;  3DDF A;  4YZD A;  2PMR A;  3D52 A;  1OA0 A;  4EZZ A;  2EFL A;  2F7Q A;  2X3W A;  3I9V 1;  3I04 A;  2RAD A;  1R34 A;  4I1T A;  2D4C A;  2V6E A;  2RT6 A;  2BL8 A;  4AS2 A;  3VEB A;  2YI8 A;  1O7D C;  4IW0 A;  2X3V A;  3LJ0 A;  4HR1 B;  4IM2 A;  1JQO A;  2FEF A;  3OWG A;  1PS3 A;  2O0I 1;  4EZQ A;  3DA3 A;  1SU7 A;  4IM0 A;  1TDP A;  3CZS A;  4OAV B;  1DKZ A;  4I1Q A;  2LXY A;  5C5B A;  4FM3 A;  3D4Z A;  1MJG A;  1YO7 A;  2YL9 A;  4NPH A;  4G76 A;  4HYB A;  2Q12 A;  2YLA A;  1O7D B;  4YZ9 A;  3FBV A;  4ATM A;  4JWD A;  3D2E A;  3O3M B;  3DX0 A;  4R5I A;  2YLL A;  3LLL A;  1X04 A;  1SU8 A;  3LVT A;  1W9M A;  2Z8Y A;  1DKY A;  1QWN A;  3SYV A;  2XTQ A;  2GAF D;  5FLE X;  3DPO A;  4FZP A;  2GF4 A;  3DPP A;  4JLC A;  1GN9 A;  3B51 X;  4IWP A;  1TQS A;  1TQU A;  5E84 A;  1I49 A;  2QZG A;  2YL6 A;  4UDY X;  4NV2 A;  2C08 A;  4AZC A;  1E2U A;  5KBP A;  4E3C A;  2RAK A;  4NV5 A;  4JWI A;  4PO2 A;  2ND1 A;  4R5L A;  4AZB A;  4Q9V A;  2A2C A;  3L3P A;  2F1B A;  2Z0V A;  3HAJ A;  3QE6 A;  2NCZ A;  4AZG A;  1E1D A;  4Z7G A;  3ERC C;  3CAZ A;  2YKT A;  4EZR A;  3FNB A;  2RAJ A;  3HAH A;  4OAU C;  3O3O B;  3D51 A;  4WPC A;  3ABH A;  3KAV A;  3O3N B;  3LJ1 A;  2ETD A;  2ZRR A;  1HTY A;  3LJ2 A;  4HEA 1;  2JAE A;  4JWC A;  1I4L A;  2P22 B;  4JNF A;  1JQK A;  3D2F A;  3DX4 A;  1U5K A;  1R5E A;  2YFB A;  3DO9 A;  2QXL A;  2MJF B;  1W3S A;  2K19 A;  3QNI A;  3ER8 C;  3EJQ A;  3F7W A;  3QWE A;  2YIV X;  3T49 A;  1URU A;  3Q8D A;  4KIK A;  2OBM A;  3QNJ A;  3T46 A;  4AZH A;  3EJT A;  4JN4 A;  1I4D A;  4JL9 A;  4R5K A;  4AZ7 A;  4R5J A;  4R5G A;  4EZY A;  2F66 B;  2F7R A;  4U6R A;  3G9G A;  3KDR A;  4HY9 A;  4EZP A;  4JWE A;  2OBL A;  1Y2O A;  2RAI A;  2QKW A;  1TQV A;  2L1L B;  4EZN A;  2F7P A;  4IWQ A;  3M3W A;  2OO2 A;  4B9Q A;  2Z0O A;  3BUI A;  3HAI A;  2Q13 A;  3SOG A;  3A98 A;  3D50 A;  3T48 A;  2QFF A;  3BUB A;  4H6I A;  4HFV A;  1UPX A;  2F18 A;  2FUG 1;  1YWM A;  3CV5 A;  2KKM A;  1WDZ A;  2ZW3 A;  2FYV A;  3EJR A;  3KAW A;  3BVX A;  2YL8 A;  3VKH A;  4E81 A;  3DDG A;  3B52 X;  4O1O A;  3BVT A;  3BLB A;  4WPE A;  3CZN A;  3I39 X;  4G6Q A;  5C5B B;  1QX1 A;  1SUF A;  4IM3 A;  4F01 A;  1U00 A;  3DA4 A;  3EJU A;  3B53 X;  2WIN M;  3SDJ A;  3IAS 1;  2X5C A;  2V0O A;  4AZ6 A;  4NSW A;  3CKD A;  2YI9 A;  4D8J A;  3DPQ A;  5LNK 1;  3T4A G;  3ER9 B;  2Z0N A;  4H6H A;  4EZO A;  4AZI A;  2RIO A;  4IWO A;  5HGI A;  3Q0K A;  2LM0 A;  1DKX A;  3ACO A;  2F6M B;  2YIB A;  2YL5 A;  4JNE A;  2QSB A;  3VA9 A;  3UIT A;  4DCN C;  4EZT A;  2FU2 A;  3D4Y A;  3GI7 A;  3DYT A;  4YZC A;  2OZN B;  3LMF A;  2WYI A;  2N3K A;  3L3O M;  3F4M A;  3L0I A;  3PLT A;  4AZC B;  1QWU A;  2EFK A;  1I4T A;  3RPM A;  4BNE A;  2ZXQ A;  2JNK A;  4UDX X;  2OW7 A;  4EZU A;  1ZWW A;  3FD9 A;  4FZO A;  3RV0 A;  3EJP A;  2OW6 A;  4AVM A;  3DX1 A;  3IAM 1;  4FZS A;  2WYH A;  2JB1 A;  2X3X A;  3CVR A;  2CAZ B;  2JB3 A;  2F1A A;  2KHO A;  4EZW A;  1HXK A;  2F7O A;  3AJF A;  2XTR A;  1R33 A;  1SU6 A;  3ZED A;  4G75 A;  5TKY A;  5FIG A; 
#chains in the Genus database with same CATH homology
 3KAW A;  3OWG A;  2ZRR A;  2JB2 A;  3VKH A;  3LJ2 A;  4EZQ A;  1E9V A;  2PY6 A;  2JAE A;  3DA3 A;  4HEA 1;  5TKY A;  4E81 A;  4JWC A;  1SU7 A;  4IM0 A;  4OAV B;  4F00 A;  3B52 X;  2P22 B;  1DKZ A;  4JNF A;  4O1O A;  2ND0 A;  1JQK A;  3D2F A;  2E8G A;  3I39 X;  4G6Q A;  1SJ8 A;  4JCV E;  4FM3 A;  1SUF A;  3I01 A;  2EWF A;  1U5K A;  4IM3 A;  2YFA A;  3T47 A;  4F01 A;  1U00 A;  3DA4 A;  1MJG A;  3B53 X;  2WIN M;  1OA1 A;  3SDJ A;  1YO7 A;  2YFB A;  3IAS 1;  4NPH A;  4G76 A;  3DO9 A;  2QXL A;  4HYB A;  2X5C A;  2MJF B;  4HR1 A;  1W3S A;  2K19 A;  3C7N A;  3ER8 C;  3P23 A;  3F7W A;  4YZ9 A;  3FBV A;  4JWD A;  2YI9 A;  3D2E A;  2YIV X;  3T49 A;  3O3M B;  4R5I A;  4D8J A;  5LNK 1;  3T4A G;  3Q8D A;  3OHX M;  4KIK A;  4KIK B;  4Z7H A;  3RV1 A;  4EZX A;  3ER9 B;  2OBM A;  3QNJ A;  4H6H A;  4EZO A;  1GNT A;  3T46 A;  4GXT A;  4PL5 A;  1OAO A;  2RIO A;  4IWO A;  5HGI A;  4JN4 A;  1SU8 A;  4JL9 A;  4R5K A;  3VEA A;  2IP6 A;  4EZS A;  3KP9 A;  1ZYL A;  4R5J A;  4R5G A;  4EZY A;  4O1P A;  2LM0 A;  1DKX A;  2F66 B;  1GNL A;  2F6M B;  1W9M A;  2YIB A;  4JNE A;  2Z8Y A;  4U6R A;  2JNS A;  2A2D A;  1DKY A;  3VA9 A;  2XTQ A;  2GA9 D;  2GAF D;  3KDR A;  5FLE X;  3DPO A;  3UIT A;  4HY9 A;  4EZT A;  4EZV A;  3DPP A;  4JLC A;  4EZP A;  1GN9 A;  3B51 X;  3QA8 A;  3GI7 A;  4IWP A;  4JWE A;  4YZC A;  3LMF A;  5E84 A;  2OBL A;  2EX3 B;  4PL3 A;  2N3K A;  4DWL A;  3L3O M;  3F4M A;  4UDY X;  4NV2 A;  3L0I A;  4M0M A;  4AS3 A;  2L1L B;  4EZN A;  1E2U A;  2V1C C;  4E3C A;  4NV5 A;  4IWQ A;  2XMX A;  4UDX X;  4JWI A;  4PO2 A;  2YIA A;  2ND1 A;  4R5L A;  4B9Q A;  4Q9V A;  2A2C A;  4PL4 A;  4EZU A;  3FD9 A;  3JSB A;  3RV0 A;  2NCZ A;  4YZD A;  1E1D A;  3A98 A;  4Z7G A;  1OA0 A;  3ERC C;  3T48 A;  4EZZ A;  3IAM 1;  3I9V 1;  2QFF A;  4EZR A;  3I04 A;  4H6I A;  4I1T A;  4HFV A;  2JB1 A;  1UPX A;  2CAZ B;  2JB3 A;  4OAU C;  3O3O B;  2KHO A;  4EZW A;  2V6E A;  2FUG 1;  2RT6 A;  4AS2 A;  3VEB A;  2YI8 A;  3KAV A;  3O3N B;  3AJF A;  2KKM A;  2XTR A;  1SU6 A;  3LJ1 A;  4IW0 A;  3LJ0 A;  3ZED A;  4G75 A;  4HR1 B;  3DPQ A;  4IM2 A;  5FIG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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