3UOEA

The crystal structure of dehydrogenase from sinorhizobium meliloti
Total Genus 97
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
97
sequence length
339
structure length
339
Chain Sequence
LYFQSMMRLPPARLRNLSVALLEKRGVPADSARLQANLLLEAELRGLPSHGLQRLPLLLSRLDKGLANPTTRGNGTWRRASFLSVDGERGLGPVVMMDAMRVTRRILKETGLAIAAIRNANHMGMLAYYAEAAARDGLIGIVMSTSEALVHPFGGTQALIGTNPVAIGIPAAGHPFVLDLATSIVSMGKINNHAMRGLAIPPGWAVDRDGRATTDPHAAQAGAIAPFGDAKGYGLGLAIELLVAALAGSNLAPDVNGTLDDIHPANKGDLLILIDPSAGAGSIPALAAYLDRLRLSRPLDPTQPVAIPGDGARARRAAAAKTGIELPQPLFDHLTALEA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Dehydrogenase
publication title The crystal structure of dehydrogenase from Sinorhizobium meliloti
rcsb
source organism Sinorhizobium meliloti
total genus 97
structure length 339
sequence length 339
chains with identical sequence B
ec nomenclature
pdb deposition date 2011-11-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02615 Ldh_2 Malate/L-lactate dehydrogenase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1530.10 Mainly Alpha Orthogonal Bundle Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 3uoeA01
3.30.60.50 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Hypothetical oxidoreductase yiak; domain 3 3uoeA03
3.30.1370.60 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 Hypothetical oxidoreductase yiak; domain 2 3uoeA02
1S20A 1VBIA 1NXUA 1X0AA 1WTJA 3UOEA 2CWFA 3I0PA 1V9NA 4H8AA 2G8YA 4FJSA 2CWHA 1Z2IA 2X06A 4FJUA 1XRHA
chains in the Genus database with same CATH superfamily
3E59A 3FC3A 5EX3A 3GR5A 2M5XA 4B8CD 2Y0MA 2D9IA 5JHWC 2ELIA 2OPVA 3TJQA 1UVFA 4HGUA 1J5KA 2SGEI 2ERWA 4JI8H 4DR4H 4JI7H 2YUUA 1UHAA 1XRHA 4NBQA 1MT1A 1PTRA 2LUYA 2DKVA 4DUZH 3OVOA 2NU2I 4JI6H 4KHPH 2N71A 1K7VA 1XX6A 5BR8H 2CTEA 4EC5A 1K7UA 1N34H 1M8CA 3R5CA 2Y3MA 1OMUA 2UUCH 1ODHA 2ORWA 1UVGA 2X3TA 3FSYA 2VKCA 3TOBA 1FAQA 3I0PA 1X4SA 1N36H 4DNCA 1ULNA 4AQYH 2PY9A 4JVHA 3J81W 2JEBI 2PQUA 5K36G 2QPOA 3KY9A 4JI0H 1Y8FA 4UXJA 4B3MH 2WGCA 2JA1A 4DV4H 2YQPA 4IFDG 1XMOH 3UOEA 3FAUA 2G8YA 3TO7A 1HEVA 5A2QW 1IBKH 2J9RA 1Z2IA 4JCVE 3GABA 3OXLA 3U1KA 1HNWH 1I94H 2XRCA 3QTLD 1K1GA 4B3RH 1XMQH 3UGLA 1HR0H 3NCVA 2V53A 1I6UA 4BA1I 4JVYA 3UEYA 3SEKC 4B3SH 1HDLA 2BL5A 2HH3A 2YQRA 2WVJA 1CE3A 1XBTA 4LF7H 1SGPI 2N1AB 3UGDA 4DV7H 1VDDA 3JAMW 2CTKA 4B6DA 1YTPA 3L7ZC 2RIJA 2GKTI 1XNRH 3OXGA 4DR5H 2ZQEA 4UXHA 5J8CA 2AXYA 5HI7A 3J80W 2HH2A 5DAEA 2ENZA 4FJUA 2CWGA 4DR7H 1ULKA 4NXNH 1LR7A 9WGAA 4JI2H 2KCXA 2W0TA 2ENNA 1V8CA 2A1SA 2UZ3A 1WE8A 1J5EH 1SEIA 1CGII 2M8WA 4JI3H 5FUWA 1X0AA 1VIHA 1HPTA 1CT2I 1PTQA 4X62H 1LR9A 3KDGA 2JXDA 2GKVA 2V1CA 2CPMA 1SGEI 2PT7G 1WHRA 2OPUA 3OTOH 2F3CI 3EZJA 4DUYH 3HH2C 4A24A 2NU0I 4SGBI 4JV5H 3R5AA 2JW6A 5JEAG 2F4VH 2L7XA 2LEOA 1TBQR 1IW4A 4OCHA 3SB1A 3QD7X 2P2RA 2LF0A 1AN1I 3QAHA 1TGSI 2QQEA 1WVNA 2ZM6H 2N52A 2JE6I 1CHOI 2B8TA 1BUSA 1CT0I 1OYVI 5DT9A 3GOXA 3RF2A 1DTJA 4GI3C 1WTJA 1X9ZA 4NZRM 1MJ9A 2UXCH 2CWFA 4B8TA 1X4NA 1R0RI 4DV0H 1S20A 2Z0SA 1M8BA 2E73A 4OD6A 2GKRI 1OVOA 2JVZA 1KHMA 1AN7A 1Z7KB 2NU3I 1KBEA 4GKKH 3E2IA 1PJUA 2N17A 1MJAA 2K9HA 4YY3H 2VQEH 4L9MA 1K7TA 1IY5A 1FKAH 4WANA 1IY6A 1YU6C 2E5RA 2V1CC 4FKDA 3SGQI 2ODDA 2X52A 2PQ8A 2VQFH 1XA6A 2QQCA 2ROWA 1ZZJA 2DIPA 2SGDI 1V9NA 2LRRA 4DV2H 2K1HA 5HQ8A 3AEVB 4DV3H 3SGBI 3GKUA 2KMRA 3QWPA 1OMTA 2JZXA 1Y1CA 2JA9A 2RC4A 1J4WA 2SGPI 4OVOA 3PDNA 2WCYA 1DS3I 2CPQA 1MJBA 4PDBA 1SGYI 4YHHH 3OL0A 1LR8A 3J7AK 1TBOA 3TO6A 5IWAH 3MEKA 1WKXA 2SGFI 2E3UA 3BJIA 4JYAH 1BMOA 2ARPF 2OU2A 4LF8H 2FFMA 1N13A 4X65H 5EX0A 4DR3H 1N33H 4OO1G 5FUXA 4LF4H 4DV1H 1HNZH 4LFBH 1IBMH 3T1HH 2FNFX 2GVIA 2SGQI 1ULMA 3VDPA 3UGIA 1N32H 1ZTGA 4JI5H 1W3SA 1IBLH 2X06A 4E1PA 3VDUA 1RFHA 2A20A 2E5LH 4AM3A 2BUSA 1XNQH 1DS2I 4E9JA 1KMAA 1TURA 1VBIA 4DV5H 5IT9W 3T1YH 4FJSA 5E3RA 3D00A 2CTMA 4LIJA 2OZUA 1TIHA 1WGCA 2LTMA 1WGTA 2UU9H 1EC6A 4MPIA 4JI1H 4NXMH 2JYYA 2QQDA 1TUSA 4NZTM 2CTJA 1V1HA 2OVOA 3V69A 3OSSD 1F0XA 7WGAA 5FLXW 3R5BA 4UXIA 2UXDH 3OXFA 2JEAI 2NU4I 1X74A 1MSZA 2DB6A 1SGNI 3RU0A 2KMOA 2ANRA 1PPFI 4E1RA 1Y1BA 2ORVA 4DR2H 4H8AA 2NN6G 4X64H 5E3QA 2LTLA 5J8FA 4JI4H 1P9ZA 1W4RA 2UUAH 3FSXA 3TOAA 3VE5A 4LFCH 2CTFA 1TBRR 2L8EA 1U5KA 4X66H 1ZZKA 1TOTA 1S03G 5LL6b 2J87A 5CCLA 4QMFB 5FUVA 4LF9H 4AMLA 1X4MA 1CT4I 4LF6H 4BA2I 1R79A 1FY7A 1UG8A 4B3TH 2DGRA 5LMUH 1UUCA 2M6QA 2UVOA 3CXLA 1FARA 1DT4A 2KMPA 1P9GA 3VKEA 4DV6H 2NU1I 2B0UC 2CWHA 2UXBH 5FUYA 1TUAA 1PCEA 2GIVA 1CGJI 2VRWB 3B4VC 2UUBH 3R5DA 1NUBA 1H0ZA 2LB7A 1HJAI 3KDKA 2BA0A 3TO9A 2FPHX 4GKJH 1NXUA 2QQ0A 3OETA 1SGRI 4AIMA 1SGQI 4WALA 1FYBA 1FJGH 4K0KH 3UEJA 1SGDI 1Q9BA 2FMRA 4DR1H 2MJHA 1V1IA 2CJSC 2JZMA 2ANNA 5LMNH 4WP4A 2QNDA 3UFFA 4LFAH 5CCMA 1HNXH 5C0XG 1KBFA 2HHHH 1CSOI 1VIGA 2P6AC 1ZZIA 1PQXA 4OX9H 2KMQA 4DR6H 2O4CA 4G08A 1TBNA 2OD1A 4LF5H 5E3PA 2CTLA
chains in the Genus database with same CATH topology
1S20A 1VBIA 1NXUA 1X0AA 1WTJA 3UOEA 2CWFA 3I0PA 1V9NA 4H8AA 2G8YA 4FJSA 2CWHA 1Z2IA 2X06A 4FJUA 1XRHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1S20 A;  1VBI A;  1NXU A;  1X0A A;  1WTJ A;  3UOE A;  2CWF A;  3I0P A;  1V9N A;  4H8A A;  2G8Y A;  4FJS A;  2CWH A;  1Z2I A;  2X06 A;  4FJU A;  1XRH A; 
#chains in the Genus database with same CATH topology
 3E59 A;  3FC3 A;  5EX3 A;  3GR5 A;  2M5X A;  4B8C D;  2Y0M A;  2D9I A;  5JHW C;  2ELI A;  2OPV A;  3TJQ A;  1UVF A;  4HGU A;  1J5K A;  2SGE I;  2ERW A;  4JI8 H;  4DR4 H;  4JI7 H;  2YUU A;  1UHA A;  1XRH A;  4NBQ A;  1MT1 A;  1PTR A;  2LUY A;  2DKV A;  4DUZ H;  3OVO A;  2NU2 I;  4JI6 H;  4KHP H;  2N71 A;  1K7V A;  1XX6 A;  5BR8 H;  2CTE A;  4EC5 A;  1K7U A;  1N34 H;  1M8C A;  3R5C A;  2Y3M A;  1OMU A;  2UUC H;  1ODH A;  2ORW A;  1UVG A;  2X3T A;  3FSY A;  2VKC A;  3TOB A;  1FAQ A;  3I0P A;  1X4S A;  1N36 H;  4DNC A;  1ULN A;  4AQY H;  2PY9 A;  4JVH A;  3J81 W;  2JEB I;  2PQU A;  5K36 G;  2QPO A;  3KY9 A;  4JI0 H;  1Y8F A;  4UXJ A;  4B3M H;  2WGC A;  2JA1 A;  4DV4 H;  2YQP A;  4IFD G;  1XMO H;  3UOE A;  3FAU A;  2G8Y A;  3TO7 A;  1HEV A;  5A2Q W;  1IBK H;  2J9R A;  1Z2I A;  4JCV E;  3GAB A;  3OXL A;  3U1K A;  1HNW H;  1I94 H;  2XRC A;  3QTL D;  1K1G A;  4B3R H;  1XMQ H;  3UGL A;  1HR0 H;  3NCV A;  2V53 A;  1I6U A;  4BA1 I;  4JVY A;  3UEY A;  3SEK C;  4B3S H;  1HDL A;  2BL5 A;  2HH3 A;  2YQR A;  2WVJ A;  1CE3 A;  1XBT A;  4LF7 H;  1SGP I;  2N1A B;  3UGD A;  4DV7 H;  1VDD A;  3JAM W;  2CTK A;  4B6D A;  1YTP A;  3L7Z C;  2RIJ A;  2GKT I;  1XNR H;  3OXG A;  4DR5 H;  2ZQE A;  4UXH A;  5J8C A;  2AXY A;  5HI7 A;  3J80 W;  2HH2 A;  5DAE A;  2ENZ A;  4FJU A;  2CWG A;  4DR7 H;  1ULK A;  4NXN H;  1LR7 A;  9WGA A;  4JI2 H;  2KCX A;  2W0T A;  2ENN A;  1V8C A;  2A1S A;  2UZ3 A;  1WE8 A;  1J5E H;  1SEI A;  1CGI I;  2M8W A;  4JI3 H;  5FUW A;  1X0A A;  1VIH A;  1HPT A;  1CT2 I;  1PTQ A;  4X62 H;  1LR9 A;  3KDG A;  2JXD A;  2GKV A;  2V1C A;  2CPM A;  1SGE I;  2PT7 G;  1WHR A;  2OPU A;  3OTO H;  2F3C I;  3EZJ A;  4DUY H;  3HH2 C;  4A24 A;  2NU0 I;  4SGB I;  4JV5 H;  3R5A A;  2JW6 A;  5JEA G;  2F4V H;  2L7X A;  2LEO A;  1TBQ R;  1IW4 A;  4OCH A;  3SB1 A;  3QD7 X;  2P2R A;  2LF0 A;  1AN1 I;  3QAH A;  1TGS I;  2QQE A;  1WVN A;  2ZM6 H;  2N52 A;  2JE6 I;  1CHO I;  2B8T A;  1BUS A;  1CT0 I;  1OYV I;  5DT9 A;  3GOX A;  3RF2 A;  1DTJ A;  4GI3 C;  1WTJ A;  1X9Z A;  4NZR M;  1MJ9 A;  2UXC H;  2CWF A;  4B8T A;  1X4N A;  1R0R I;  4DV0 H;  1S20 A;  2Z0S A;  1M8B A;  2E73 A;  4OD6 A;  2GKR I;  1OVO A;  2JVZ A;  1KHM A;  1AN7 A;  1Z7K B;  2NU3 I;  1KBE A;  4GKK H;  3E2I A;  1PJU A;  2N17 A;  1MJA A;  2K9H A;  4YY3 H;  2VQE H;  4L9M A;  1K7T A;  1IY5 A;  1FKA H;  4WAN A;  1IY6 A;  1YU6 C;  2E5R A;  2V1C C;  4FKD A;  3SGQ I;  2ODD A;  2X52 A;  2PQ8 A;  2VQF H;  1XA6 A;  2QQC A;  2ROW A;  1ZZJ A;  2DIP A;  2SGD I;  1V9N A;  2LRR A;  4DV2 H;  2K1H A;  5HQ8 A;  3AEV B;  4DV3 H;  3SGB I;  3GKU A;  2KMR A;  3QWP A;  1OMT A;  2JZX A;  1Y1C A;  2JA9 A;  2RC4 A;  1J4W A;  2SGP I;  4OVO A;  3PDN A;  2WCY A;  1DS3 I;  2CPQ A;  1MJB A;  4PDB A;  1SGY I;  4YHH H;  3OL0 A;  1LR8 A;  3J7A K;  1TBO A;  3TO6 A;  5IWA H;  3MEK A;  1WKX A;  2SGF I;  2E3U A;  3BJI A;  4JYA H;  1BMO A;  2ARP F;  2OU2 A;  4LF8 H;  2FFM A;  1N13 A;  4X65 H;  5EX0 A;  4DR3 H;  1N33 H;  4OO1 G;  5FUX A;  4LF4 H;  4DV1 H;  1HNZ H;  4LFB H;  1IBM H;  3T1H H;  2FNF X;  2GVI A;  2SGQ I;  1ULM A;  3VDP A;  3UGI A;  1N32 H;  1ZTG A;  4JI5 H;  1W3S A;  1IBL H;  2X06 A;  4E1P A;  3VDU A;  1RFH A;  2A20 A;  2E5L H;  4AM3 A;  2BUS A;  1XNQ H;  1DS2 I;  4E9J A;  1KMA A;  1TUR A;  1VBI A;  4DV5 H;  5IT9 W;  3T1Y H;  4FJS A;  5E3R A;  3D00 A;  2CTM A;  4LIJ A;  2OZU A;  1TIH A;  1WGC A;  2LTM A;  1WGT A;  2UU9 H;  1EC6 A;  4MPI A;  4JI1 H;  4NXM H;  2JYY A;  2QQD A;  1TUS A;  4NZT M;  2CTJ A;  1V1H A;  2OVO A;  3V69 A;  3OSS D;  1F0X A;  7WGA A;  5FLX W;  3R5B A;  4UXI A;  2UXD H;  3OXF A;  2JEA I;  2NU4 I;  1X74 A;  1MSZ A;  2DB6 A;  1SGN I;  3RU0 A;  2KMO A;  2ANR A;  1PPF I;  4E1R A;  1Y1B A;  2ORV A;  4DR2 H;  4H8A A;  2NN6 G;  4X64 H;  5E3Q A;  2LTL A;  5J8F A;  4JI4 H;  1P9Z A;  1W4R A;  2UUA H;  3FSX A;  3TOA A;  3VE5 A;  4LFC H;  2CTF A;  1TBR R;  2L8E A;  1U5K A;  4X66 H;  1ZZK A;  1TOT A;  1S03 G;  5LL6 b;  2J87 A;  5CCL A;  4QMF B;  5FUV A;  4LF9 H;  4AML A;  1X4M A;  1CT4 I;  4LF6 H;  4BA2 I;  1R79 A;  1FY7 A;  1UG8 A;  4B3T H;  2DGR A;  5LMU H;  1UUC A;  2M6Q A;  2UVO A;  3CXL A;  1FAR A;  1DT4 A;  2KMP A;  1P9G A;  3VKE A;  4DV6 H;  2NU1 I;  2B0U C;  2CWH A;  2UXB H;  5FUY A;  1TUA A;  1PCE A;  2GIV A;  1CGJ I;  2VRW B;  3B4V C;  2UUB H;  3R5D A;  1NUB A;  1H0Z A;  2LB7 A;  1HJA I;  3KDK A;  2BA0 A;  3TO9 A;  2FPH X;  4GKJ H;  1NXU A;  2QQ0 A;  3OET A;  1SGR I;  4AIM A;  1SGQ I;  4WAL A;  1FYB A;  1FJG H;  4K0K H;  3UEJ A;  1SGD I;  1Q9B A;  2FMR A;  4DR1 H;  2MJH A;  1V1I A;  2CJS C;  2JZM A;  2ANN A;  5LMN H;  4WP4 A;  2QND A;  3UFF A;  4LFA H;  5CCM A;  1HNX H;  5C0X G;  1KBF A;  2HHH H;  1CSO I;  1VIG A;  2P6A C;  1ZZI A;  1PQX A;  4OX9 H;  2KMQ A;  4DR6 H;  2O4C A;  4G08 A;  1TBN A;  2OD1 A;  4LF5 H;  5E3P A;  2CTL A; 
#chains in the Genus database with same CATH homology
 1S20 A;  1VBI A;  1NXU A;  1X0A A;  1WTJ A;  3UOE A;  2CWF A;  3I0P A;  1V9N A;  4H8A A;  2G8Y A;  4FJS A;  2CWH A;  1Z2I A;  2X06 A;  4FJU A;  1XRH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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