3V45A

Crystal structure of de novo designed serine hydrolase osh55, northeast structural genomics consortium target or130
Total Genus 56
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
56
sequence length
166
structure length
166
Chain Sequence
ARIREVQGDITEFQGDAIVNAANNYLKLGAGVAGAILRKGGPSIQEECDRIGKIRVGEAAVTGAGNLPVRYVIHAAVLGDEPASLETVRKATKSALEKAVELGLKTVAFTALGAWVGGLPAEAVLRVMLEEIKKAPDTLEVTGVHGTEKSAEAARRALLEHHHHHH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags De novo protein
molecule keywords Serine hydrolase OSH55
publication title Design of activated serine-containing catalytic triads with atomic-level accuracy.
pubmed doi rcsb
total genus 56
structure length 166
sequence length 166
ec nomenclature
pdb deposition date 2011-12-14
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.220.10 Alpha Beta 3-Layer(aba) Sandwich Leucine Aminopeptidase, subunit E; domain 1 Leucine Aminopeptidase, subunit E, domain 1 3v45A00
2LGRA 3ETIA 4ETKA 1TXZA 4JCAA 2FG1A 1BPNA 3EWPA 4K3NA 4ABLA 5FSVA 1NJRA 4X2TA 4KSIA 3H8EA 5AILA 4TU0A 4KYBA 4UMLA 1BPMA 3GQOA 4ETJA 3KR5A 3EKEA 3GQEA 3EWOA 4IQYA 2FAVA 3KQXA 3Q71A 2BFRA 4ZY0A 1YD9A 2ACFA 5CB3A 1LAPA 1BLLE 3JRUA 2J9AA 5FSXA 5CB5A 3Q6ZA 2EWBA 3VFQA 3EJFA 4ZX9A 4ABKA 3IIFA 3KR4A 4GUAA 3PEIA 3SIJA 1LANA 2AFCA 4ZY2A 4J5RA 5DUSA 1TY8A 4J4ZA 2L8RA 3EJGA 3SIGA 1SPVA 1ZR5A 3JZTA 4GVVA 3H8FA 5CMSA 2XD7A 4ZX8A 3V2BA 3KZWA 4R7MA 1GYTA 3KQZA 4R6TA 1VHUA 3T8WA 4JLLA 3IIDA 4ZI6A 3V45A 2FXKA 4GVWA 4ESSA 1LAMA 4D86A 4R76A 3EW5A 2BFQA 1HJZA 3EWRA 3EWQA 5E3BA 3GPGA 5FSYA 2EEEA 1ZR3A 5HOLA 3SIIA 3IJ3A 4ZY1A 4K0CA 1LCPA 5FSUA 5HIHA 2VRIA 5D8NA 4J5QA 3SIHA 4ZYQA 4J5SA 4JVVA 3GPOA 3GPQA 2DX6A 2X47A 4JGKA 3H8GA 5CBMA 5FSZA
chains in the Genus database with same CATH superfamily
2LGRA 3ETIA 2W2GA 4ETKA 1TXZA 4JCAA 2FG1A 1BPNA 2JZEA 3EWPA 4K3NA 4ABLA 2JZFA 5FSVA 1NJRA 4X2TA 4KSIA 3H8EA 5AILA 4TU0A 4KYBA 4UMLA 1BPMA 3GQOA 2KQVA 4ETJA 3KR5A 3EKEA 3GQEA 3EWOA 4IQYA 2FAVA 3KQXA 2WCTA 3Q71A 2BFRA 4ZY0A 1YD9A 2ACFA 5CB3A 1LAPA 1BLLE 3JRUA 2J9AA 5FSXA 5CB5A 3Q6ZA 2EWBA 3VFQA 3EJFA 2RNKA 4ZX9A 4ABKA 3IIFA 3KR4A 4GUAA 3PEIA 3SIJA 1LANA 2AFCA 4ZY2A 4J5RA 5DUSA 1TY8A 4J4ZA 2L8RA 3EJGA 3SIGA 1SPVA 1ZR5A 3JZTA 4GVVA 3H8FA 5CMSA 2XD7A 4ZX8A 3V2BA 3KZWA 4R7MA 1GYTA 3KQZA 4R6TA 1VHUA 3T8WA 4JLLA 3IIDA 4ZI6A 3V45A 2FXKA 4GVWA 4ESSA 1LAMA 4D86A 4R76A 3EW5A 2BFQA 1HJZA 3EWRA 3EWQA 5E3BA 2JZDA 3GPGA 5FSYA 2EEEA 1ZR3A 5HOLA 3SIIA 3IJ3A 4ZY1A 4K0CA 1LCPA 5FSUA 5HIHA 2VRIA 5D8NA 4J5QA 3SIHA 4ZYQA 4J5SA 4JVVA 3GPOA 3GPQA 2DX6A 2X47A 4JGKA 3H8GA 5CBMA 5FSZA
chains in the Genus database with same CATH topology
2LGRA 3ETIA 4ETKA 1TXZA 4JCAA 2FG1A 1BPNA 3EWPA 4K3NA 4ABLA 5FSVA 1NJRA 4X2TA 4KSIA 3H8EA 5AILA 4TU0A 4KYBA 4UMLA 1BPMA 3GQOA 4ETJA 3KR5A 3EKEA 3GQEA 3EWOA 4IQYA 2FAVA 3KQXA 3Q71A 2BFRA 4ZY0A 1YD9A 2ACFA 5CB3A 1LAPA 1BLLE 3JRUA 2J9AA 5FSXA 5CB5A 3Q6ZA 2EWBA 3VFQA 3EJFA 4ZX9A 4ABKA 3IIFA 3KR4A 4GUAA 3PEIA 3SIJA 1LANA 2AFCA 4ZY2A 4J5RA 5DUSA 1TY8A 4J4ZA 2L8RA 3EJGA 3SIGA 1SPVA 1ZR5A 3JZTA 4GVVA 3H8FA 5CMSA 2XD7A 4ZX8A 3V2BA 3KZWA 4R7MA 1GYTA 3KQZA 4R6TA 1VHUA 3T8WA 4JLLA 3IIDA 4ZI6A 3V45A 2FXKA 4GVWA 4ESSA 1LAMA 4D86A 4R76A 3EW5A 2BFQA 1HJZA 3EWRA 3EWQA 5E3BA 3GPGA 5FSYA 2EEEA 1ZR3A 5HOLA 3SIIA 3IJ3A 4ZY1A 4K0CA 1LCPA 5FSUA 5HIHA 2VRIA 5D8NA 4J5QA 3SIHA 4ZYQA 4J5SA 4JVVA 3GPOA 3GPQA 2DX6A 2X47A 4JGKA 3H8GA 5CBMA 5FSZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2LGR A;  3ETI A;  4ETK A;  1TXZ A;  4JCA A;  2FG1 A;  1BPN A;  3EWP A;  4K3N A;  4ABL A;  5FSV A;  1NJR A;  4X2T A;  4KSI A;  3H8E A;  5AIL A;  4TU0 A;  4KYB A;  4UML A;  1BPM A;  3GQO A;  4ETJ A;  3KR5 A;  3EKE A;  3GQE A;  3EWO A;  4IQY A;  2FAV A;  3KQX A;  3Q71 A;  2BFR A;  4ZY0 A;  1YD9 A;  2ACF A;  5CB3 A;  1LAP A;  1BLL E;  3JRU A;  2J9A A;  5FSX A;  5CB5 A;  3Q6Z A;  2EWB A;  3VFQ A;  3EJF A;  4ZX9 A;  4ABK A;  3IIF A;  3KR4 A;  4GUA A;  3PEI A;  3SIJ A;  1LAN A;  2AFC A;  4ZY2 A;  4J5R A;  5DUS A;  1TY8 A;  4J4Z A;  2L8R A;  3EJG A;  3SIG A;  1SPV A;  1ZR5 A;  3JZT A;  4GVV A;  3H8F A;  5CMS A;  2XD7 A;  4ZX8 A;  3V2B A;  3KZW A;  4R7M A;  1GYT A;  3KQZ A;  4R6T A;  1VHU A;  3T8W A;  4JLL A;  3IID A;  4ZI6 A;  3V45 A;  2FXK A;  4GVW A;  4ESS A;  1LAM A;  4D86 A;  4R76 A;  3EW5 A;  2BFQ A;  1HJZ A;  3EWR A;  3EWQ A;  5E3B A;  3GPG A;  5FSY A;  2EEE A;  1ZR3 A;  5HOL A;  3SII A;  3IJ3 A;  4ZY1 A;  4K0C A;  1LCP A;  5FSU A;  5HIH A;  2VRI A;  5D8N A;  4J5Q A;  3SIH A;  4ZYQ A;  4J5S A;  4JVV A;  3GPO A;  3GPQ A;  2DX6 A;  2X47 A;  4JGK A;  3H8G A;  5CBM A;  5FSZ A; 
#chains in the Genus database with same CATH topology
 2LGR A;  3ETI A;  2W2G A;  4ETK A;  1TXZ A;  4JCA A;  2FG1 A;  1BPN A;  2JZE A;  3EWP A;  4K3N A;  4ABL A;  2JZF A;  5FSV A;  1NJR A;  4X2T A;  4KSI A;  3H8E A;  5AIL A;  4TU0 A;  4KYB A;  4UML A;  1BPM A;  3GQO A;  2KQV A;  4ETJ A;  3KR5 A;  3EKE A;  3GQE A;  3EWO A;  4IQY A;  2FAV A;  3KQX A;  2WCT A;  3Q71 A;  2BFR A;  4ZY0 A;  1YD9 A;  2ACF A;  5CB3 A;  1LAP A;  1BLL E;  3JRU A;  2J9A A;  5FSX A;  5CB5 A;  3Q6Z A;  2EWB A;  3VFQ A;  3EJF A;  2RNK A;  4ZX9 A;  4ABK A;  3IIF A;  3KR4 A;  4GUA A;  3PEI A;  3SIJ A;  1LAN A;  2AFC A;  4ZY2 A;  4J5R A;  5DUS A;  1TY8 A;  4J4Z A;  2L8R A;  3EJG A;  3SIG A;  1SPV A;  1ZR5 A;  3JZT A;  4GVV A;  3H8F A;  5CMS A;  2XD7 A;  4ZX8 A;  3V2B A;  3KZW A;  4R7M A;  1GYT A;  3KQZ A;  4R6T A;  1VHU A;  3T8W A;  4JLL A;  3IID A;  4ZI6 A;  3V45 A;  2FXK A;  4GVW A;  4ESS A;  1LAM A;  4D86 A;  4R76 A;  3EW5 A;  2BFQ A;  1HJZ A;  3EWR A;  3EWQ A;  5E3B A;  2JZD A;  3GPG A;  5FSY A;  2EEE A;  1ZR3 A;  5HOL A;  3SII A;  3IJ3 A;  4ZY1 A;  4K0C A;  1LCP A;  5FSU A;  5HIH A;  2VRI A;  5D8N A;  4J5Q A;  3SIH A;  4ZYQ A;  4J5S A;  4JVV A;  3GPO A;  3GPQ A;  2DX6 A;  2X47 A;  4JGK A;  3H8G A;  5CBM A;  5FSZ A; 
#chains in the Genus database with same CATH homology
 2LGR A;  3ETI A;  4ETK A;  1TXZ A;  4JCA A;  2FG1 A;  1BPN A;  3EWP A;  4K3N A;  4ABL A;  5FSV A;  1NJR A;  4X2T A;  4KSI A;  3H8E A;  5AIL A;  4TU0 A;  4KYB A;  4UML A;  1BPM A;  3GQO A;  4ETJ A;  3KR5 A;  3EKE A;  3GQE A;  3EWO A;  4IQY A;  2FAV A;  3KQX A;  3Q71 A;  2BFR A;  4ZY0 A;  1YD9 A;  2ACF A;  5CB3 A;  1LAP A;  1BLL E;  3JRU A;  2J9A A;  5FSX A;  5CB5 A;  3Q6Z A;  2EWB A;  3VFQ A;  3EJF A;  4ZX9 A;  4ABK A;  3IIF A;  3KR4 A;  4GUA A;  3PEI A;  3SIJ A;  1LAN A;  2AFC A;  4ZY2 A;  4J5R A;  5DUS A;  1TY8 A;  4J4Z A;  2L8R A;  3EJG A;  3SIG A;  1SPV A;  1ZR5 A;  3JZT A;  4GVV A;  3H8F A;  5CMS A;  2XD7 A;  4ZX8 A;  3V2B A;  3KZW A;  4R7M A;  1GYT A;  3KQZ A;  4R6T A;  1VHU A;  3T8W A;  4JLL A;  3IID A;  4ZI6 A;  3V45 A;  2FXK A;  4GVW A;  4ESS A;  1LAM A;  4D86 A;  4R76 A;  3EW5 A;  2BFQ A;  1HJZ A;  3EWR A;  3EWQ A;  5E3B A;  3GPG A;  5FSY A;  2EEE A;  1ZR3 A;  5HOL A;  3SII A;  3IJ3 A;  4ZY1 A;  4K0C A;  1LCP A;  5FSU A;  5HIH A;  2VRI A;  5D8N A;  4J5Q A;  3SIH A;  4ZYQ A;  4J5S A;  4JVV A;  3GPO A;  3GPQ A;  2DX6 A;  2X47 A;  4JGK A;  3H8G A;  5CBM A;  5FSZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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