3VA4A

Crystal structure of the mammalian mdc1 fha domain complexed with chk2 pthr68 peptide
Total Genus 21
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
111
structure length
111
Chain Sequence
HMEPIGQLRLFSGTHGPERDFPLYLGKNVVGRSPDCSVALPFPSISKQHAVIEISAWNKAPILQDCGSLNGTQIVKPPRVLPPGVSHRLRDQELILFADFPCQYHRLDVPP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Cell cycle
molecule keywords Mediator of DNA damage checkpoint protein 1
publication title Structural Delineation of MDC1-FHA Domain Binding with CHK2-pThr68.
pubmed doi rcsb
source organism Mus musculus
total genus 21
structure length 111
sequence length 111
chains with identical sequence B
ec nomenclature
pdb deposition date 2011-12-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00498 FHA FHA domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.200.20 Mainly Beta Sandwich Tumour Suppressor Smad4 Tumour Suppressor Smad4 3va4A00
3HUFA 5DJOA 3UN0A 2W3OA 1J4PA 4H87A 2A0TA 3PO8A 1MZKA 1YJ5C 1LGPA 2JQJA 2LC1A 3GQSA 2KB3A 4A0EA 1K3NA 1G6GA 4QCJA 2KFUA 3FM8A 1YJMA 3POAA 3HUEA 2PIEA 2EH0A 2CSWA 4EGXA 1GXCA 5A8IA 2G1LA 2BRFA 3VPYA 3KT9A 1UJXA 2JKDA 1K3QA 3ELVA 3I6WA 3ELSA 1WLNA 4G2SA 1DMZA 1UHTA 1J4LA 2JQLA 3UOTA 1K2MA 2KB4A 4JONA 2XT9B 3I0MA 1LGQA 4EJQA 1K2NA 3VA4A 3I6UA 1J4OA 3UV0A 2AFFA 1WV3A 1K3JA 3I0NA 2FEZA 2FF4A 2KKLA 1FHRA 2JPEA 3UNNA 1QU5A 1G3GA 1J4KA 3UNMA 3OUNA 1R21A 1FHQA 3UMZA 4D9VA 3VA1A 1J4QA 5E50A 2JQIA 3HX1A 3MDBA
chains in the Genus database with same CATH superfamily
3HUFA 2I2DA 5DJOA 3UN0A 2W3OA 4WERA 3T5PA 1J4PA 4H87A 1G88A 1QWTA 2I1WA 4L02A 2A0TA 1YT5A 3PO8A 3V8RA 1MZKA 1YGSA 1ZOQA 1YJ5C 1LGPA 2JQJA 2LC1A 3GQSA 4A4YA 1U7VA 2KB3A 3VZBA 5C4VA 5DHUA 1J2FA 4A0EA 2I2BA 1K3NA 1U0RA 1KHXA 1G6GA 4QCJA 5DHQA 2KFUA 3V7UA 1SUWA 1KHUA 3FM8A 1YJMA 1U7FA 1MJSA 3V7WA 3POAA 3HUEA 1Y3IA 2PIEA 3V8QA 1DD1A 5JEKA 4DY6A 3DSHA 4HAOA 2EH0A 2CSWA 2I29A 4EGXA 1GXCA 5A8IA 4V24A 4KU0D 2G1LA 2BRFA 3VPYA 3VZCA 3A77A 3KT9A 3V80A 1UJXA 2JKDA 5EJHA 1K3QA 3ELVA 4R9PA 2I2CA 3I6WA 3ELSA 1WLNA 4G2SA 1DMZA 5DHRA 1UHTA 5DHTA 1J4LA 2JQLA 3UOTA 1K2MA 1U7VB 1DEVA 5BVIA 2KB4A 5DHSA 4JONA 2XT9B 5EJIA 5EJGA 3DITA 1Y3HA 3V7YA 2XXSA 3I0MA 2I2AA 5JEJA 1LGQA 4EJQA 1K2NA 3VA4A 3I6UA 1J4OA 5JELA 3UV0A 2AFFA 1WV3A 2QVLA 1Z0ZA 3AFOA 2Q5FA 3V8NA 1K3JA 3VZDA 3I0NA 2FEZA 2FF4A 1U7FB 2KKLA 3PFNA 3V8MA 1FHRA 1MK2A 4WRRA 2JPEA 3UNNA 4JIWD 2JGRA 5DHPA 3S40A 1QU5A 1U0TA 1G3GA 2P1RA 2I2FA 5EJFA 1J4KA 3GMJA 3UNMA 4JIVD 3OUNA 1Z0UA 1R21A 2QV7A 1FHQA 2BONA 1Z0SA 3UMZA 3V8PA 4D9VA 5JEOA 5JERA 3VA1A 2AN1A 1J4QA 1MR1A 5JEMA 5E50A 2JQIA 3HX1A 3MDBA
chains in the Genus database with same CATH topology
3HUFA 5DJOA 3UN0A 2W3OA 4WERA 3T5PA 1J4PA 4H87A 1G88A 1QWTA 4L02A 2A0TA 3PO8A 1MZKA 1YGSA 1ZOQA 1YJ5C 1LGPA 2JQJA 2LC1A 3GQSA 4A4YA 1U7VA 2KB3A 3VZBA 5C4VA 1J2FA 4A0EA 1K3NA 1KHXA 1G6GA 4QCJA 2KFUA 1KHUA 3FM8A 1YJMA 1U7FA 1MJSA 3POAA 3HUEA 2PIEA 1DD1A 5JEKA 3DSHA 2EH0A 2CSWA 4EGXA 1GXCA 5A8IA 4V24A 4KU0D 2G1LA 2BRFA 3VPYA 3VZCA 3A77A 3KT9A 1UJXA 2JKDA 1K3QA 3ELVA 4R9PA 3I6WA 3ELSA 1WLNA 4G2SA 1DMZA 1UHTA 1J4LA 2JQLA 3UOTA 1K2MA 1U7VB 1DEVA 5BVIA 2KB4A 4JONA 2XT9B 3DITA 5JEJA 2XXSA 3I0MA 1LGQA 4EJQA 1K2NA 3VA4A 3I6UA 1J4OA 5JELA 3UV0A 2AFFA 1WV3A 2QVLA 1K3JA 3VZDA 3I0NA 2FEZA 2FF4A 1U7FB 2KKLA 1FHRA 1MK2A 4WRRA 2JPEA 3UNNA 4JIWD 2JGRA 3S40A 1QU5A 1G3GA 2P1RA 1J4KA 3GMJA 3UNMA 4JIVD 3OUNA 1R21A 2QV7A 1FHQA 2BONA 3UMZA 4D9VA 5JEOA 5JERA 3VA1A 1J4QA 1MR1A 5JEMA 5E50A 2JQIA 3HX1A 3MDBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3HUF A;  5DJO A;  3UN0 A;  2W3O A;  1J4P A;  4H87 A;  2A0T A;  3PO8 A;  1MZK A;  1YJ5 C;  1LGP A;  2JQJ A;  2LC1 A;  3GQS A;  2KB3 A;  4A0E A;  1K3N A;  1G6G A;  4QCJ A;  2KFU A;  3FM8 A;  1YJM A;  3POA A;  3HUE A;  2PIE A;  2EH0 A;  2CSW A;  4EGX A;  1GXC A;  5A8I A;  2G1L A;  2BRF A;  3VPY A;  3KT9 A;  1UJX A;  2JKD A;  1K3Q A;  3ELV A;  3I6W A;  3ELS A;  1WLN A;  4G2S A;  1DMZ A;  1UHT A;  1J4L A;  2JQL A;  3UOT A;  1K2M A;  2KB4 A;  4JON A;  2XT9 B;  3I0M A;  1LGQ A;  4EJQ A;  1K2N A;  3VA4 A;  3I6U A;  1J4O A;  3UV0 A;  2AFF A;  1WV3 A;  1K3J A;  3I0N A;  2FEZ A;  2FF4 A;  2KKL A;  1FHR A;  2JPE A;  3UNN A;  1QU5 A;  1G3G A;  1J4K A;  3UNM A;  3OUN A;  1R21 A;  1FHQ A;  3UMZ A;  4D9V A;  3VA1 A;  1J4Q A;  5E50 A;  2JQI A;  3HX1 A;  3MDB A; 
#chains in the Genus database with same CATH topology
 3HUF A;  2I2D A;  5DJO A;  3UN0 A;  2W3O A;  4WER A;  3T5P A;  1J4P A;  4H87 A;  1G88 A;  1QWT A;  2I1W A;  4L02 A;  2A0T A;  1YT5 A;  3PO8 A;  3V8R A;  1MZK A;  1YGS A;  1ZOQ A;  1YJ5 C;  1LGP A;  2JQJ A;  2LC1 A;  3GQS A;  4A4Y A;  1U7V A;  2KB3 A;  3VZB A;  5C4V A;  5DHU A;  1J2F A;  4A0E A;  2I2B A;  1K3N A;  1U0R A;  1KHX A;  1G6G A;  4QCJ A;  5DHQ A;  2KFU A;  3V7U A;  1SUW A;  1KHU A;  3FM8 A;  1YJM A;  1U7F A;  1MJS A;  3V7W A;  3POA A;  3HUE A;  1Y3I A;  2PIE A;  3V8Q A;  1DD1 A;  5JEK A;  4DY6 A;  3DSH A;  4HAO A;  2EH0 A;  2CSW A;  2I29 A;  4EGX A;  1GXC A;  5A8I A;  4V24 A;  4KU0 D;  2G1L A;  2BRF A;  3VPY A;  3VZC A;  3A77 A;  3KT9 A;  3V80 A;  1UJX A;  2JKD A;  5EJH A;  1K3Q A;  3ELV A;  4R9P A;  2I2C A;  3I6W A;  3ELS A;  1WLN A;  4G2S A;  1DMZ A;  5DHR A;  1UHT A;  5DHT A;  1J4L A;  2JQL A;  3UOT A;  1K2M A;  1U7V B;  1DEV A;  5BVI A;  2KB4 A;  5DHS A;  4JON A;  2XT9 B;  5EJI A;  5EJG A;  3DIT A;  1Y3H A;  3V7Y A;  2XXS A;  3I0M A;  2I2A A;  5JEJ A;  1LGQ A;  4EJQ A;  1K2N A;  3VA4 A;  3I6U A;  1J4O A;  5JEL A;  3UV0 A;  2AFF A;  1WV3 A;  2QVL A;  1Z0Z A;  3AFO A;  2Q5F A;  3V8N A;  1K3J A;  3VZD A;  3I0N A;  2FEZ A;  2FF4 A;  1U7F B;  2KKL A;  3PFN A;  3V8M A;  1FHR A;  1MK2 A;  4WRR A;  2JPE A;  3UNN A;  4JIW D;  2JGR A;  5DHP A;  3S40 A;  1QU5 A;  1U0T A;  1G3G A;  2P1R A;  2I2F A;  5EJF A;  1J4K A;  3GMJ A;  3UNM A;  4JIV D;  3OUN A;  1Z0U A;  1R21 A;  2QV7 A;  1FHQ A;  2BON A;  1Z0S A;  3UMZ A;  3V8P A;  4D9V A;  5JEO A;  5JER A;  3VA1 A;  2AN1 A;  1J4Q A;  1MR1 A;  5JEM A;  5E50 A;  2JQI A;  3HX1 A;  3MDB A; 
#chains in the Genus database with same CATH homology
 3HUF A;  5DJO A;  3UN0 A;  2W3O A;  4WER A;  3T5P A;  1J4P A;  4H87 A;  1G88 A;  1QWT A;  4L02 A;  2A0T A;  3PO8 A;  1MZK A;  1YGS A;  1ZOQ A;  1YJ5 C;  1LGP A;  2JQJ A;  2LC1 A;  3GQS A;  4A4Y A;  1U7V A;  2KB3 A;  3VZB A;  5C4V A;  1J2F A;  4A0E A;  1K3N A;  1KHX A;  1G6G A;  4QCJ A;  2KFU A;  1KHU A;  3FM8 A;  1YJM A;  1U7F A;  1MJS A;  3POA A;  3HUE A;  2PIE A;  1DD1 A;  5JEK A;  3DSH A;  2EH0 A;  2CSW A;  4EGX A;  1GXC A;  5A8I A;  4V24 A;  4KU0 D;  2G1L A;  2BRF A;  3VPY A;  3VZC A;  3A77 A;  3KT9 A;  1UJX A;  2JKD A;  1K3Q A;  3ELV A;  4R9P A;  3I6W A;  3ELS A;  1WLN A;  4G2S A;  1DMZ A;  1UHT A;  1J4L A;  2JQL A;  3UOT A;  1K2M A;  1U7V B;  1DEV A;  5BVI A;  2KB4 A;  4JON A;  2XT9 B;  3DIT A;  5JEJ A;  2XXS A;  3I0M A;  1LGQ A;  4EJQ A;  1K2N A;  3VA4 A;  3I6U A;  1J4O A;  5JEL A;  3UV0 A;  2AFF A;  1WV3 A;  2QVL A;  1K3J A;  3VZD A;  3I0N A;  2FEZ A;  2FF4 A;  1U7F B;  2KKL A;  1FHR A;  1MK2 A;  4WRR A;  2JPE A;  3UNN A;  4JIW D;  2JGR A;  3S40 A;  1QU5 A;  1G3G A;  2P1R A;  1J4K A;  3GMJ A;  3UNM A;  4JIV D;  3OUN A;  1R21 A;  2QV7 A;  1FHQ A;  2BON A;  3UMZ A;  4D9V A;  5JEO A;  5JER A;  3VA1 A;  1J4Q A;  1MR1 A;  5JEM A;  5E50 A;  2JQI A;  3HX1 A;  3MDB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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