3VVJA

Structure of ovalbumin from emu (dromaius novaehollandiae)
Total Genus 114
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
114
Knots found
sequence length
387
structure length
384
Chain Sequence
GSIGAASTEFCFDMFKELKVHHVNENIIYSPLSIISILSMVFLGARENTKTQMEKVIHFDKITGFGESLESQCGTSVSVHASLKDILSEITKPSDNYSLSLASKLYAEETYPVLPEYLQCIKELYKGSLETVSFQTAADQARELINSWVETQTNGVIKNFLQPGSVDPQTEMVLVDAIYFKGTWEKAFKDEDTQEVPFRITEQESKPVQMMYQAGSFKVATVAAEKMKILELPYASGELSMFVLLPDDISGLEQLETTISIEKLSEWTSSNMMEDRKMKVYLPHMKIEEKYNLTSVLVALGMTDLFSPSANLSGISTAQTLKMSEAIHGAYVEIYEAGSEMATSTGVLVEVSEEFRVDHPFLFLIKHNPSNSILFFGRCIFPHH
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase inhibitor
molecule keywords Ovalbumin
publication title Structure of Emu (Dromaius novaehollandiae) ovalbumin revealed a unique folding topology
rcsb
source organism Dromaius novaehollandiae
total genus 114
structure length 384
sequence length 387
chains with identical sequence B, C
other databases KnotProt 2.0: Artifct S 41 -31 -3
ec nomenclature
pdb deposition date 2012-07-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00079 Serpin Serpin (serine protease inhibitor)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.39.10 Mainly Beta Roll Alpha-1-antitrypsin; domain 1 Alpha-1-antitrypsin, domain 1 3vvjA02
3.30.497.10 Alpha Beta 2-Layer Sandwich Antithrombin; Chain I, domain 2 Antithrombin, subunit I, domain 2 3vvjA01
3DRMA 2B4XI 2OL2A 1F0CA 3CWLA 1MTPA 3NDDA 2ARRA 9APIA 1JTIA 1JMOA 3CAAA 7APIA 4DTEA 2B4XL 4IC0A 3DRUA 1XQGA 2PEEA 3T1PA 3NE4A 1SEKA 2WXXA 1LQ8A 1PSIA 1ATTA 4AJUA 1E04I 2V95A 3VVJA 1SR5A 4X30A 1A7CA 2CEOA 1BR8I 5IO1A 2VDXA 1LJ5A 2VDYA 1WZ9A 1SNGA 1DVNA 1B3KA 2RIVA 4ROAA 8APIA 1ATUA 2ZNHA 3FGQA 1OPHA 4YIAA 3DLWA 3UT3A 3NDAA 3B9FI 2OAYA 5CE0A 2XN6A 4EB1I 4IF8A 2PEFA 2XN3A 3F5NA 4RO9A 4ZK0A 1OVAC 4AU3A 1E03I 4AU3B 1OC0A 4AU2A 4ZK3A 1C8OA 2BEHI 2ACHA 4R9IA 2WXWA 4EB1L 4Y40A 1QLPA 3STOA 2ANTI 2WY1A 2WXZC 4P0OA 1EZXA 1QMBA 2BEHL 3DY0A 3F1SA 1AS4A 1NQ9I 1IZ2A 2ZV6A 1YXAA 2ARQA 1HLEA 1JMJA 4AQHA 5CDZA 4BB2A 3CVMA 1JVQI 1D5SA 3NDFA 2VH4A 1LK6I 4PYWA 2QUGA 4AU4A 1DZGI 4C41A 2DUTA 1OVAA 1OYHI 2HI9A 3Q03A 1OO8A 2WXYC 3R4LA 3Q02A 1T1FA 3KCGI 4GA7A 4G8RA 5CDXA 4DY7C 3CWMA 5HGCA 4AJTA 2H4RA 2H4PA 2RIWA 1DZGL 1JJOC 3PZFA 1C5GA 1JRRA 4RSQA 1OYHL 1E05I 5EI0A 1QMNA 1ANTI 1ATHA 2WXZA 3ZHAA 1DVMA 2WY0C 2XN5A 3EVJI 1UHGA 1R1LI 1TB6I 2GD4C 9PAIA 2HIJI 2B5TI 3OZQA 1DZHL 4G8OA 4CAAA 4C49A 1XQJA 2R9YA 4P0FA 4ROBA 5C98A 1DB2A 3PB1I 1AZXI 2H4QA 3F02A 2HIJL 1OVAB 1M93B 3LW2A 2D26A 1K9OI 3EOXA 4KDSA 1IMVA 1XU8A 3LE2A 3H5CA 1BY7A 1DZHI 5BRRI 4DY0A 4AFXA 1HP7A 2XN7A 4Y3KA 1KCTA 5INWA
chains in the Genus database with same CATH superfamily
3DRMA 2B4XI 2OL2A 1F0CA 3CWLA 1MTPA 3NDDA 2ARRA 9APIA 1JTIA 1JMOA 3CAAA 7APIA 4DTEA 2B4XL 4IC0A 3DRUA 1XQGA 2PEEA 3T1PA 3NE4A 1SEKA 2WXXA 1LQ8A 1PSIA 1ATTA 4AJUA 1E04I 2V95A 3VVJA 1SR5A 4X30A 1A7CA 2CEOA 1BR8I 5IO1A 2VDXA 1LJ5A 2VDYA 1WZ9A 1SNGA 1DVNA 1B3KA 2RIVA 4ROAA 8APIA 1ATUA 2ZNHA 3FGQA 1OPHA 4YIAA 3DLWA 3UT3A 3NDAA 3B9FI 2OAYA 5CE0A 2XN6A 4EB1I 4IF8A 2PEFA 2XN3A 3F5NA 4RO9A 4ZK0A 1OVAC 4AU3A 1E03I 4AU3B 1OC0A 4AU2A 4ZK3A 1C8OA 2BEHI 2ACHA 4R9IA 2WXWA 4EB1L 4Y40A 1QLPA 3STOA 2ANTI 2WY1A 2WXZC 4P0OA 1EZXA 1QMBA 2BEHL 3DY0A 3F1SA 1AS4A 1NQ9I 1IZ2A 2ZV6A 1YXAA 2ARQA 1HLEA 1JMJA 4AQHA 5CDZA 4BB2A 3CVMA 1JVQI 1D5SA 3NDFA 2VH4A 1LK6I 4PYWA 2QUGA 4AU4A 1DZGI 4C41A 2DUTA 1OVAA 1OYHI 2HI9A 3Q03A 1OO8A 2WXYC 3R4LA 3Q02A 1T1FA 3KCGI 4GA7A 4G8RA 5CDXA 4DY7C 3CWMA 5HGCA 4AJTA 2H4RA 2H4PA 2RIWA 1DZGL 1JJOC 3PZFA 1C5GA 1JRRA 4RSQA 1OYHL 1E05I 5EI0A 1QMNA 1ANTI 1ATHA 2WXZA 3ZHAA 1DVMA 2WY0C 2XN5A 3EVJI 1UHGA 1R1LI 1TB6I 2GD4C 9PAIA 2HIJI 2B5TI 3OZQA 1DZHL 4G8OA 4CAAA 4C49A 1XQJA 2R9YA 4P0FA 4ROBA 5C98A 1DB2A 3PB1I 1AZXI 2H4QA 3F02A 2HIJL 1OVAB 1M93B 3LW2A 2D26A 1K9OI 3EOXA 4KDSA 1IMVA 1XU8A 3LE2A 3H5CA 1BY7A 1DZHI 5BRRI 4DY0A 4AFXA 1HP7A 2XN7A 4Y3KA 1KCTA 5INWA
chains in the Genus database with same CATH topology
3DRMA 2B4XI 2OL2A 1F0CA 3CWLA 1MTPA 3NDDA 2ARRA 9APIA 1JTIA 1JMOA 3CAAA 7APIA 4DTEA 2B4XL 4IC0A 3DRUA 1XQGA 2PEEA 3T1PA 3NE4A 1SEKA 2WXXA 1LQ8A 1PSIA 1ATTA 4AJUA 1E04I 2V95A 3VVJA 1SR5A 4X30A 1A7CA 2CEOA 1BR8I 5IO1A 2VDXA 1LJ5A 2VDYA 1WZ9A 1SNGA 1DVNA 1B3KA 2RIVA 4ROAA 8APIA 1ATUA 2ZNHA 3FGQA 1OPHA 4YIAA 3DLWA 3UT3A 3NDAA 3B9FI 2OAYA 5CE0A 2XN6A 4EB1I 4IF8A 2PEFA 2XN3A 3F5NA 4RO9A 4ZK0A 1OVAC 4AU3A 1E03I 4AU3B 1OC0A 4AU2A 4ZK3A 1C8OA 2BEHI 2ACHA 4R9IA 2WXWA 4EB1L 4Y40A 1QLPA 3STOA 2ANTI 2WY1A 2WXZC 4P0OA 1EZXA 1QMBA 2BEHL 3DY0A 3F1SA 1AS4A 1NQ9I 1IZ2A 2ZV6A 1YXAA 2ARQA 1HLEA 1JMJA 4AQHA 5CDZA 4BB2A 3CVMA 1JVQI 1D5SA 3NDFA 2VH4A 1LK6I 4PYWA 2QUGA 4AU4A 1DZGI 4C41A 2DUTA 1OVAA 1OYHI 2HI9A 3Q03A 1OO8A 2WXYC 3R4LA 3Q02A 1T1FA 3KCGI 4GA7A 4G8RA 5CDXA 4DY7C 3CWMA 5HGCA 4AJTA 2H4RA 2H4PA 2RIWA 1DZGL 1JJOC 3PZFA 1C5GA 1JRRA 4RSQA 1OYHL 1E05I 5EI0A 1QMNA 1ANTI 1ATHA 2WXZA 3ZHAA 1DVMA 2WY0C 2XN5A 3EVJI 1UHGA 1R1LI 1TB6I 2GD4C 9PAIA 2HIJI 2B5TI 3OZQA 1DZHL 4G8OA 4CAAA 4C49A 1XQJA 2R9YA 4P0FA 4ROBA 5C98A 1DB2A 3PB1I 1AZXI 2H4QA 3F02A 2HIJL 1OVAB 1M93B 3LW2A 2D26A 1K9OI 3EOXA 4KDSA 1IMVA 1XU8A 3LE2A 3H5CA 1BY7A 1DZHI 5BRRI 4DY0A 4AFXA 1HP7A 2XN7A 4Y3KA 1KCTA 5INWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3DRM A;  2B4X I;  2OL2 A;  1F0C A;  3CWL A;  1MTP A;  3NDD A;  2ARR A;  9API A;  1JTI A;  1JMO A;  3CAA A;  7API A;  4DTE A;  2B4X L;  4IC0 A;  3DRU A;  1XQG A;  2PEE A;  3T1P A;  3NE4 A;  1SEK A;  2WXX A;  1LQ8 A;  1PSI A;  1ATT A;  4AJU A;  1E04 I;  2V95 A;  3VVJ A;  1SR5 A;  4X30 A;  1A7C A;  2CEO A;  1BR8 I;  5IO1 A;  2VDX A;  1LJ5 A;  2VDY A;  1WZ9 A;  1SNG A;  1DVN A;  1B3K A;  2RIV A;  4ROA A;  8API A;  1ATU A;  2ZNH A;  3FGQ A;  1OPH A;  4YIA A;  3DLW A;  3UT3 A;  3NDA A;  3B9F I;  2OAY A;  5CE0 A;  2XN6 A;  4EB1 I;  4IF8 A;  2PEF A;  2XN3 A;  3F5N A;  4RO9 A;  4ZK0 A;  1OVA C;  4AU3 A;  1E03 I;  4AU3 B;  1OC0 A;  4AU2 A;  4ZK3 A;  1C8O A;  2BEH I;  2ACH A;  4R9I A;  2WXW A;  4EB1 L;  4Y40 A;  1QLP A;  3STO A;  2ANT I;  2WY1 A;  2WXZ C;  4P0O A;  1EZX A;  1QMB A;  2BEH L;  3DY0 A;  3F1S A;  1AS4 A;  1NQ9 I;  1IZ2 A;  2ZV6 A;  1YXA A;  2ARQ A;  1HLE A;  1JMJ A;  4AQH A;  5CDZ A;  4BB2 A;  3CVM A;  1JVQ I;  1D5S A;  3NDF A;  2VH4 A;  1LK6 I;  4PYW A;  2QUG A;  4AU4 A;  1DZG I;  4C41 A;  2DUT A;  1OVA A;  1OYH I;  2HI9 A;  3Q03 A;  1OO8 A;  2WXY C;  3R4L A;  3Q02 A;  1T1F A;  3KCG I;  4GA7 A;  4G8R A;  5CDX A;  4DY7 C;  3CWM A;  5HGC A;  4AJT A;  2H4R A;  2H4P A;  2RIW A;  1DZG L;  1JJO C;  3PZF A;  1C5G A;  1JRR A;  4RSQ A;  1OYH L;  1E05 I;  5EI0 A;  1QMN A;  1ANT I;  1ATH A;  2WXZ A;  3ZHA A;  1DVM A;  2WY0 C;  2XN5 A;  3EVJ I;  1UHG A;  1R1L I;  1TB6 I;  2GD4 C;  9PAI A;  2HIJ I;  2B5T I;  3OZQ A;  1DZH L;  4G8O A;  4CAA A;  4C49 A;  1XQJ A;  2R9Y A;  4P0F A;  4ROB A;  5C98 A;  1DB2 A;  3PB1 I;  1AZX I;  2H4Q A;  3F02 A;  2HIJ L;  1OVA B;  1M93 B;  3LW2 A;  2D26 A;  1K9O I;  3EOX A;  4KDS A;  1IMV A;  1XU8 A;  3LE2 A;  3H5C A;  1BY7 A;  1DZH I;  5BRR I;  4DY0 A;  4AFX A;  1HP7 A;  2XN7 A;  4Y3K A;  1KCT A;  5INW A; 
#chains in the Genus database with same CATH topology
 3DRM A;  2B4X I;  2OL2 A;  1F0C A;  3CWL A;  1MTP A;  3NDD A;  2ARR A;  9API A;  1JTI A;  1JMO A;  3CAA A;  7API A;  4DTE A;  2B4X L;  4IC0 A;  3DRU A;  1XQG A;  2PEE A;  3T1P A;  3NE4 A;  1SEK A;  2WXX A;  1LQ8 A;  1PSI A;  1ATT A;  4AJU A;  1E04 I;  2V95 A;  3VVJ A;  1SR5 A;  4X30 A;  1A7C A;  2CEO A;  1BR8 I;  5IO1 A;  2VDX A;  1LJ5 A;  2VDY A;  1WZ9 A;  1SNG A;  1DVN A;  1B3K A;  2RIV A;  4ROA A;  8API A;  1ATU A;  2ZNH A;  3FGQ A;  1OPH A;  4YIA A;  3DLW A;  3UT3 A;  3NDA A;  3B9F I;  2OAY A;  5CE0 A;  2XN6 A;  4EB1 I;  4IF8 A;  2PEF A;  2XN3 A;  3F5N A;  4RO9 A;  4ZK0 A;  1OVA C;  4AU3 A;  1E03 I;  4AU3 B;  1OC0 A;  4AU2 A;  4ZK3 A;  1C8O A;  2BEH I;  2ACH A;  4R9I A;  2WXW A;  4EB1 L;  4Y40 A;  1QLP A;  3STO A;  2ANT I;  2WY1 A;  2WXZ C;  4P0O A;  1EZX A;  1QMB A;  2BEH L;  3DY0 A;  3F1S A;  1AS4 A;  1NQ9 I;  1IZ2 A;  2ZV6 A;  1YXA A;  2ARQ A;  1HLE A;  1JMJ A;  4AQH A;  5CDZ A;  4BB2 A;  3CVM A;  1JVQ I;  1D5S A;  3NDF A;  2VH4 A;  1LK6 I;  4PYW A;  2QUG A;  4AU4 A;  1DZG I;  4C41 A;  2DUT A;  1OVA A;  1OYH I;  2HI9 A;  3Q03 A;  1OO8 A;  2WXY C;  3R4L A;  3Q02 A;  1T1F A;  3KCG I;  4GA7 A;  4G8R A;  5CDX A;  4DY7 C;  3CWM A;  5HGC A;  4AJT A;  2H4R A;  2H4P A;  2RIW A;  1DZG L;  1JJO C;  3PZF A;  1C5G A;  1JRR A;  4RSQ A;  1OYH L;  1E05 I;  5EI0 A;  1QMN A;  1ANT I;  1ATH A;  2WXZ A;  3ZHA A;  1DVM A;  2WY0 C;  2XN5 A;  3EVJ I;  1UHG A;  1R1L I;  1TB6 I;  2GD4 C;  9PAI A;  2HIJ I;  2B5T I;  3OZQ A;  1DZH L;  4G8O A;  4CAA A;  4C49 A;  1XQJ A;  2R9Y A;  4P0F A;  4ROB A;  5C98 A;  1DB2 A;  3PB1 I;  1AZX I;  2H4Q A;  3F02 A;  2HIJ L;  1OVA B;  1M93 B;  3LW2 A;  2D26 A;  1K9O I;  3EOX A;  4KDS A;  1IMV A;  1XU8 A;  3LE2 A;  3H5C A;  1BY7 A;  1DZH I;  5BRR I;  4DY0 A;  4AFX A;  1HP7 A;  2XN7 A;  4Y3K A;  1KCT A;  5INW A; 
#chains in the Genus database with same CATH homology
 3DRM A;  2B4X I;  2OL2 A;  1F0C A;  3CWL A;  1MTP A;  3NDD A;  2ARR A;  9API A;  1JTI A;  1JMO A;  3CAA A;  7API A;  4DTE A;  2B4X L;  4IC0 A;  3DRU A;  1XQG A;  2PEE A;  3T1P A;  3NE4 A;  1SEK A;  2WXX A;  1LQ8 A;  1PSI A;  1ATT A;  4AJU A;  1E04 I;  2V95 A;  3VVJ A;  1SR5 A;  4X30 A;  1A7C A;  2CEO A;  1BR8 I;  5IO1 A;  2VDX A;  1LJ5 A;  2VDY A;  1WZ9 A;  1SNG A;  1DVN A;  1B3K A;  2RIV A;  4ROA A;  8API A;  1ATU A;  2ZNH A;  3FGQ A;  1OPH A;  4YIA A;  3DLW A;  3UT3 A;  3NDA A;  3B9F I;  2OAY A;  5CE0 A;  2XN6 A;  4EB1 I;  4IF8 A;  2PEF A;  2XN3 A;  3F5N A;  4RO9 A;  4ZK0 A;  1OVA C;  4AU3 A;  1E03 I;  4AU3 B;  1OC0 A;  4AU2 A;  4ZK3 A;  1C8O A;  2BEH I;  2ACH A;  4R9I A;  2WXW A;  4EB1 L;  4Y40 A;  1QLP A;  3STO A;  2ANT I;  2WY1 A;  2WXZ C;  4P0O A;  1EZX A;  1QMB A;  2BEH L;  3DY0 A;  3F1S A;  1AS4 A;  1NQ9 I;  1IZ2 A;  2ZV6 A;  1YXA A;  2ARQ A;  1HLE A;  1JMJ A;  4AQH A;  5CDZ A;  4BB2 A;  3CVM A;  1JVQ I;  1D5S A;  3NDF A;  2VH4 A;  1LK6 I;  4PYW A;  2QUG A;  4AU4 A;  1DZG I;  4C41 A;  2DUT A;  1OVA A;  1OYH I;  2HI9 A;  3Q03 A;  1OO8 A;  2WXY C;  3R4L A;  3Q02 A;  1T1F A;  3KCG I;  4GA7 A;  4G8R A;  5CDX A;  4DY7 C;  3CWM A;  5HGC A;  4AJT A;  2H4R A;  2H4P A;  2RIW A;  1DZG L;  1JJO C;  3PZF A;  1C5G A;  1JRR A;  4RSQ A;  1OYH L;  1E05 I;  5EI0 A;  1QMN A;  1ANT I;  1ATH A;  2WXZ A;  3ZHA A;  1DVM A;  2WY0 C;  2XN5 A;  3EVJ I;  1UHG A;  1R1L I;  1TB6 I;  2GD4 C;  9PAI A;  2HIJ I;  2B5T I;  3OZQ A;  1DZH L;  4G8O A;  4CAA A;  4C49 A;  1XQJ A;  2R9Y A;  4P0F A;  4ROB A;  5C98 A;  1DB2 A;  3PB1 I;  1AZX I;  2H4Q A;  3F02 A;  2HIJ L;  1OVA B;  1M93 B;  3LW2 A;  2D26 A;  1K9O I;  3EOX A;  4KDS A;  1IMV A;  1XU8 A;  3LE2 A;  3H5C A;  1BY7 A;  1DZH I;  5BRR I;  4DY0 A;  4AFX A;  1HP7 A;  2XN7 A;  4Y3K A;  1KCT A;  5INW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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