The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
48
|
sequence length |
149
|
structure length |
149
|
Chain Sequence |
SQEMETLMESIKKALEREIEQGAIEVENLGQQIVIRMREKGAFPEGSAFLQPKFRPLVRQIAELVKDVPGIVRVSGHTDNRPLDSELYRSNWDLSSQRAVSVAQEMEKVRGFSHQRLRVRGMADTEPLLPNDSDDNRALNRRVEISIMQ
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Membrane protein
|
| molecule keywords |
PomB
|
| publication title |
Conformational change in the periplasmic region of the flagellar stator coupled with the assembly around the rotor
pubmed doi rcsb |
| source organism |
Vibrio alginolyticus
|
| total genus |
48
|
| structure length |
149
|
| sequence length |
149
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2014-01-17 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00691 | OmpA | OmpA family |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | 60s Ribosomal Protein L30; Chain: A; | OmpA-like domain |
#chains in the Genus database with same CATH superfamily 3TD4 A; 4G88 A; 3IMP A; 3S02 A; 2LBT A; 2AIZ P; 3S03 A; 4RHA A; 3TD5 A; 3CYQ A; 3S0H A; 2ZOV A; 3S0W A; 2ZF8 A; 4G4V A; 1OAP A; 3LDT A; 5EB1 B; 4ZHV A; 5EB0 A; 1R1M A; 2HQS C; 3WPX A; 4G4Y A; 4ERH A; 2L26 A; 4ZHW A; 4G4W A; 4B5C A; 2ZVZ A; 3OON A; 2N48 A; 5EAZ A; 4B62 A; 3WPW A; 4ZHY B; 3S0Y A; 2ZVY A; 2KGW A; 3CYP B; 3KHN A; 2LCA A; 3TD3 A; 4PWT A; 3S06 A; 4G4X A; 4G4Z A; 2W8B C; 2K1S A; 4R40 B; 2MQE A; #chains in the Genus database with same CATH topology 3AGK A; 1IV3 A; 2GZL A; 4BT6 A; 2F9Z C; 1KNK A; 3EOR A; 3N2K A; 3CC7 F; 4X1Y B; 3C9T A; 2OTM A; 4M8I A; 1KD1 H; 4BVR A; 1XV2 A; 4O4H A; 3CME F; 4NWO B; 3GHZ A; 3JAK B; 3RYF A; 3K2X A; 3CCR F; 4IIJ A; 3C8L A; 3HKE B; 3NVK E; 1GO0 A; 3JAW A; 5IT9 M; 2HS3 A; 3IEQ A; 3D01 A; 2IQQ A; 3LME A; 5BMV B; 5EB0 A; 2DYY A; 4C8I A; 3WJP A; 3KIZ A; 4TV9 B; 4ZHW A; 4TUY A; 3LWV C; 2KG4 A; 2ZOD A; 3HKB B; 1M90 H; 1FSZ A; 1W57 A; 3CPW F; 3JAS B; 3L7Q A; 2BTU A; 1W5F A; 1XBI A; 2H6L A; 1S72 F; 4ZOL B; 3FD6 A; 4X1Y A; 1Q81 H; 1Q8R A; 3T80 A; 2I6D A; 1VK3 A; 4F6R B; 3JVH A; 4EB6 B; 1W3E X; 1JN1 A; 2PMP A; 4ZHQ B; 2YYE A; 4BW0 B; 4G4V A; 3O85 A; 3LWQ C; 5B8F A; 2R75 1; 3ZO8 A; 3RYC B; 4G4W A; 4O4J B; 5JCO A; 2BO1 A; 1QVG F; 3JAK A; 3CCU F; 5FLX M; 4EI9 A; 3HKE A; 2VXY A; 2CWJ A; 3WGN A; 1X7O A; 3P4E A; 4BVS A; 1NJI H; 2KTV A; 2UYJ A; 3RYI B; 5BMV A; 2CHT A; 2UZH A; 1JJ2 F; 3S03 A; 1U43 A; 4TV9 A; 4X1I A; 3CG6 A; 3LYB A; 1DBF A; 3HKB A; 3MCA B; 3M1X A; 5EB1 B; 5G4V C; 1VQP F; 1VQ4 F; 5MN6 A; 2IAF A; 3FD5 A; 1YJN F; 3VOB A; 2H8C A; 1TVK B; 4ZOL A; 3RYH B; 2ALE A; 2FGY A; 3VIU A; 3WJQ A; 2JNB A; 3S0Y A; 3N4Z A; 3CYP B; 2NMU A; 4F6R A; 1RQ7 A; 4ZHQ A; 3I7T A; 3QTY A; 3KE1 A; 1U3P A; 4IHJ A; 2VAW A; 2OZB A; 5HWE A; 4EI7 A; 1RA4 A; 1ODE A; 4O4J A; 2PHN A; 3WGK A; 5EYP B; 3LDT A; 1YJW F; 1XRG A; 5DCV A; 3RA5 A; 4ZI7 B; 5CB4 B; 3IEW A; 4C8E A; 3G71 F; 2VAP A; 3RYI A; 3E20 B; 2Z01 A; 4EI8 A; 4TV8 B; 4U3J B; 2LCA A; 5LOV B; 2AMT A; 3DDN A; 1E7K A; 2HP0 B; 3MQW A; 4O2A B; 3V3T A; 3HJW C; 4BT7 A; 4R40 B; 2HX0 A; 2CHS A; 1DT9 A; 5LP6 B; 1CK2 A; 5CA1 B; 5CA0 B; 3CCQ F; 3UT5 B; 1YQN A; 3RYH A; 3HKD B; 1H7M A; 3IKF A; 5IJ9 A; 3Q8H A; 1VQ6 F; 3JAT B; 3M84 A; 3V4D A; 3ZP4 A; 4C81 A; 1W2B F; 2GVI A; 1QU9 A; 1W59 A; 3F0E A; 1SA0 A; 2Q1X A; 5MN4 A; 5J2T A; 2DT4 A; 5KX5 B; 4G4X A; 1K8A H; 5EYP A; 3G4S F; 4BT5 A; 4B45 A; 1W55 A; 4YJ3 B; 3HKC B; 4ZI7 A; 3N4Y A; 1YHQ F; 1T0A A; 4I55 B; 4BT3 A; 1X25 A; 3CCV F; 4TV8 A; 4U3J A; 3K14 A; 3SIV A; 2AIF A; 3WJR A; 5LOV A; 2RHO A; 2HP0 A; 4O2A A; 2N48 A; 3MCQ A; 2IG8 A; 3MBM A; 2BTO A; 2LBW A; 5EZY B; 1FNK A; 3I55 F; 2QA4 F; 2P6Y A; 4PWT A; 4BY9 D; 1YIJ F; 5LP6 A; 5CA1 A; 1W58 1; 3UT5 A; 2W8B C; 4LNU B; 3RA6 A; 1IV2 A; 4I50 B; 2BTQ B; 3F0F A; 1JFF B; 1ZWZ A; 2Z1T A; 3CYQ A; 4NUT A; 3VOA A; 4XCQ A; 1KQS F; 5LA6 B; 5HY4 A; 3NK6 A; 3JAT A; 1YI2 F; 1H47 A; 3JCM M; 2V9Y A; 3JAR B; 5ITZ B; 1UFY A; 3WGL A; 5KX5 A; 1VQO F; 3FBA A; 1QVF F; 3VI6 A; 4ZHY B; 1QD9 A; 2ZVY A; 5GIP C; 2RHJ A; 2OTJ F; 2HP3 A; 5AVM A; 3HKC A; 3ERN A; 1YGY A; 4I55 A; 1VQN F; 4B5C A; 3I56 F; 2OTL F; 4G88 A; 3M4S A; 5GAP K; 1VQL F; 5J2U B; 1JY8 A; 1VQ8 F; 1VHA A; 1OAP A; 1Q82 H; 5MN5 A; 5EZY A; 3R0P A; 3JAS A; 4U39 A; 4C82 A; 1XHO A; 1GZ0 A; 1Z5W A; 3ZP7 A; 3NMU C; 4I50 A; 1NMU B; 3BYQ A; 4FFB B; 3B6N A; 3ELC A; 4O2B B; 4EB6 A; 2ZAU A; 5HP8 A; 5LA6 A; 3V7Q A; 3CD6 F; 1VQK F; 5IJ0 B; 3LWO C; 1KC8 H; 5ITZ A; 3C9S A; 3E1Y A; 3P10 A; 3ESJ A; 2EWC A; 5JH7 B; 3RYC A; 3S0H A; 2HVY D; 3OBW A; 1VQ9 F; 2CZW A; 5KMG B; 4ERH A; 1FFX B; 5FNV B; 2I6R A; 3DC2 A; 3GYQ A; 5EAZ A; 2Z1F A; 1IV4 A; 5GIN C; 3CXC F; 3J7A R; 3WPW A; 3NK7 A; 1GX1 A; 2KGW A; 1PF5 A; 5J2U A; 3PLA C; 4G4Z A; 1CN7 A; 1IPA A; 2K1S A; 3C9R A; 3VYS C; 3VO8 A; 3TD4 A; 2QTP A; 3TD5 A; 3CCL F; 2CSL A; 2RHH A; 4X20 B; 2ZOV A; 4LCK A; 1U3L A; 1W5A A; 1TVK A; 3QUW A; 1YJ9 F; 3J81 M; 1QAH A; 4G4Y A; 5GON B; 3E22 B; 4FFB A; 3G6E F; 4O2B A; 3CPQ A; 1RLU A; 4BT2 A; 5C8Y B; 5IJ0 A; 2VGM A; 1T0K B; 1PXW A; 2QEX F; 3HWU A; 5JH7 A; 5JVD B; 5HY1 A; 3D00 A; 5KMG A; 1FFX A; 5FNV A; 2AIZ P; 4RHA A; 2RB9 A; 5CB4 A; 1SDS A; 3I3F A; 3KJK A; 2GLZ A; 1VQV A; 3WGM A; 1R1M A; 1Q86 H; 2CVL A; 5GAN K; 1OFU A; 3CB2 A; 4C4W C; 1K73 H; 5LYJ B; 3CC2 F; 3JAL B; 1W5E A; 2YXZ A; 1W41 A; 3OW2 F; 3S06 A; 4O4I B; 4X20 A; 2OHW A; 5CA0 A; 2HRY A; 3CCE F; 3HKD A; 4BVT A; 3U0O A; 5GON A; 3E22 A; 1COM A; 4O4L B; 4DRX B; 3F6M A; 4BT4 A; 3F0D A; 3LFO A; 2R6R 1; 5C8Y A; 2QI2 A; 4X1I B; 3LWP C; 3VYU C; 3NVI B; 2UYN B; 4TZZ A; 2H8E A; 1X7P A; 5JVD A; 5FJ4 C; 3D54 A; 3LWR C; 1KNJ A; 3KHN A; 3OBY A; 4X1K B; 3ON1 A; 5LP6 C; 4E6E A; 5HY2 A; 1U40 A; 4YJ3 A; 4NQ3 A; 2FC3 A; 2HS4 A; 1VQM F; 1RLG A; 3S02 A; 3IMP A; 3K0T A; 1Q7Y H; 1FNJ A; 3IKE A; 3FPI A; 1K9M H; 5IYZ B; 5LYJ A; 4IHJ B; 4ZHV A; 1TUB B; 4WBN B; 3JAL A; 3IR9 A; 5HY0 A; 3WPX A; 1W42 A; 3CCS F; 3PAF A; 4YJ2 B; 2Q1Y A; 4O4I A; 5JCO C; 3CC4 F; 5HXZ A; 3ZOP A; 4I4T B; 5EO3 A; 5JQG B; 1W5B A; 3N2G B; 4LNU A; 4RQO A; 3HAX D; 5LXT B; 1NQ3 A; 5EWR A; 1N8R H; 4O4L A; 4DRX A; 1ONI A; 1JFF A; 2HRU A; 2LBX A; 3RE3 A; 3J80 M; 4HNA B; 5G4U C; 2WAL A; 2MQE A; 3CMA F; 1GO1 A; 3MDO A; 1SZQ A; 2VAM A; 2LBT A; 3WXM B; 1VQ5 F; 2CW4 A; 3JAR A; 3KJJ A; 2UYN A; 3WGJ A; 2UYK A; 4DXD A; 3S0W A; 1IV1 A; 3QHD A; 1J7H A; 4X3M A; 3VYT C; 4X1K A; 3CCJ F; 1VQ7 F; 3JAM M; 2L26 A; 2Z1E A; 1YIT F; 3N2K B; 1H48 A; 3VMF B; 3FFM A; 3F0G A; 3HTN A; 2UYP A; 1W40 A; 5HP7 A; 5IJ9 B; 3P0Z A; 3K12 A; 3V7E A; 5IYZ A; 3VTI C; 5A2Q M; 1TUB A; 4WBN A; 1UI9 A; 4KWE A; 4O4H B; 1CLI A; 3SIU A; 1SA0 B; 1X52 A; 4C8G A; 5J2T B; 2G9I A; 4YJ2 A; 1RQ2 A; 2B33 A; 2KTU A; 1Z5V A; 2RHL A; 1VH8 A; 2ZF8 A; 4I4T A; 3GTZ A; 5EIB C; 3RYF B; 4IIJ B; 5JQG A; 3N2G A; 2HQS C; 3VCZ A; 5LXT A; 4ZK7 A; 3CCM F; 4BVQ A; 4B46 A; 5EIB D; 2HS0 A; 3JAW B; 2ZVZ A; 3OON A; 3C9U A; 4HNA A; 4B62 A; 5GIO C; 3TD3 A; 1JD1 A; 4TUY B; 2Z1U A; 2VGN A; 5HXU A; 4X3L A; 1M1K H; #chains in the Genus database with same CATH homology 3TD4 A; 4G88 A; 3IMP A; 3S02 A; 2LBT A; 2AIZ P; 3S03 A; 4RHA A; 3TD5 A; 3CYQ A; 3S0H A; 2ZOV A; 3S0W A; 2ZF8 A; 4G4V A; 1OAP A; 3LDT A; 5EB1 B; 4ZHV A; 5EB0 A; 1R1M A; 2HQS C; 3WPX A; 4G4Y A; 4ERH A; 2L26 A; 4ZHW A; 4G4W A; 4B5C A; 2ZVZ A; 3OON A; 2N48 A; 5EAZ A; 4B62 A; 3WPW A; 4ZHY B; 3S0Y A; 2ZVY A; 2KGW A; 3CYP B; 3KHN A; 2LCA A; 3TD3 A; 4PWT A; 3S06 A; 4G4X A; 4G4Z A; 2W8B C; 2K1S A; 4R40 B; 2MQE A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
