3ZNRA

Hdac7 bound with inhibitor tmp269
Total Genus 134
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
134
sequence length
386
structure length
368
Chain Sequence
LPFTTGLIYDSVMLKHQCSCGDNSRHPEHAGRIQSIWSRLQERGLRSQCECLRGRKASLEELQSVHSERHVLLYGTNPLSVMLPCGGVGVDTDTIWNELHSSNAARWAAGSVTDLAFKVASRELKNGFAVVRPPGHHADHSTAMGFCFFNSVAIACRQLQQQSKASKILIVDWDVHHGNGTQQTFYQDPSVLYISLHRHDDGNFFPGSGAVDEVGAGSGEGFNVNVAWAGGLDPPMGDPEYLAAFRIVVMPIAREFSPDLVLVSAGFDAAEGHPAPLGGYHVSAKCFGYMTQQLMNLAGGAVVLALEGGHDLTAICDASEACVAALLGNRVDPLSEEGWKQKPNLNAIRSLEAVIRVHSKYWGCMQRL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
molecule keywords HISTONE DEACETYLASE 7
publication title Selective Class Iia Histone Deacetylase Inhibition Via a Non-Chelating Zinc Binding Group
pubmed doi rcsb
source organism Homo sapiens
total genus 134
structure length 368
sequence length 386
chains with identical sequence B, C
ec nomenclature ec 3.5.1.98: Histone deacetylase.
pdb deposition date 2013-02-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00850 Hist_deacetyl Histone deacetylase domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.800.20 Alpha Beta 3-Layer(aba) Sandwich Arginase; Chain A Histone deacetylase domain 3znrA00
3MZ4A 3MZ3A 4RN0A 5G0JA 4BZ9A 1C3PA 5D1CA 1ZZ0A 5G1AA 5G3WA 3C0ZA 1C3RA 5DC6A 5BWZA 5G10A 1C3SA 4QA2A 5THTA 4QA0A 5FUEA 4QA5A 3C10A 2VQQA 3MENA 5EEKA 5EEMA 5G13A 1ZZ1A 3Q9CA 2V5XA 4RN1A 1T64A 2VQOA 3ZNRA 5G0GA 5DC8A 4ZUNA 2VCGA 5EFNA 4A69A 2GH6A 5EFJD 3Q9FA 4BKXB 3Q9EA 4QA4A 5THVA 5IWGA 3EW8A 5G0HA 4CBYA 4ZUMA 3EWFA 5G0YA 3MAXA 3SFFA 4CBTA 2VQMA 5JI5A 5EF8A 3ZNSA 4LXZA 4CQFA 1ZZ3A 5EFKB 5G0IA 3F06A 5THUA 5D1BA 4BZ5A 5IX0A 2VQVA 4QA1A 5A2SA 5EEIA 5G0XA 4QA3A 5EENA 5G11A 5DC7A 5DC5A 4BZ7A 5EFBD 3Q9BA 5EF7A 4RN2A 3SFHA 3C0YA 3MZ6A 4BZ6A 1T67A 5THSA 3F07A 4QA6A 5FCWA 3RQDA 1T69A 1W22A 4ZUOA 2VQWG 5LI3A 3EZPA 3F0RA 4QA7A 4ZURA 5G1CA 5D1DA 5EEFA 2V5WA 4ZUQA 5EFGA 1VKGA 5G1BA 3MZ7A 5G17A 5ICNB 3EZTA 5EFHA 2VQJA 5G12A 4ZUPA 4LY1A 4BZ8A
chains in the Genus database with same CATH superfamily
1WOIA 4MXRA 3MZ4A 4FCKA 3THHA 3MZ3A 1TBLA 1GQ7A 4RN0A 5G0JA 3MFVA 2RLAA 4RHQA 1WOHA 3SL0A 4IE2A 3SL1A 3LHLA 4BZ9A 1C3PA 4FCIA 5D1CA 3E9BA 4MYNA 1ZZ0A 1HQHA 5G1AA 5G3WA 1TBHA 3C0ZA 1C3RA 3PZLA 5HJ9A 5DC6A 3SKKA 5G10A 5BWZA 2EF5A 1HQFA 1C3SA 3E6VA 3F80A 4Q3SA 3THEA 3TH7A 4QA2A 5THTA 1R1OA 4QA0A 4IU5A 4MYFA 4HZEA 1P8MA 4QA5A 4RHKA 5FUEA 3C10A 4Q3QA 2VQQA 4IE3A 2EF4A 3MENA 5EEKA 5RLAA 3MFWA 5EEMA 4GSVA 1WVBA 5G13A 3E8ZA 1ZZ1A 4G3HA 4MYLA 3Q9CA 2V5XA 4Q42A 4RN1A 1T64A 2VQOA 4DZ4A 4HWWA 3ZNRA 5G0GA 1WOGA 3GN0A 4I06A 5DC8A 3MMRA 4ZUNA 3GMZA 1P8QA 2VCGA 3LP7A 3MJLA 3NIQA 5EFNA 4A69A 2GH6A 1P8NA 4IU1A 4Q3RA 3E8QA 4IU4A 5EFJD 3Q9FA 4BKXB 1P8SA 3Q9EA 4IU0A 2A0MA 4QA4A 4RHLA 3RLAA 1GQ6A 4IXVA 4Q3TA 4RLAA 5IWGA 5THVA 3EW8A 4MYKA 5G0HA 1P8OA 4ZUMA 4CBYA 3EWFA 5G0YA 2PHAA 3KV2A 3MAXA 3SFFA 1T5FA 1ZPGA 4CBTA 4RHIA 2VQMA 1HQXA 5JI5A 5EF8A 3ZNSA 4LXZA 4CQFA 1P8RA 1ZZ3A 5EFKB 5G0IA 3F06A 5THUA 1P8PA 5D1BA 4BZ5A 5IX0A 2VQVA 4QA1A 5A2SA 4GSZA 4HXQA 5EEIA 5G0XA 4QA3A 4Q40A 2EIVA 5EENA 3DJ8A 3NIPA 5DC7A 5G11A 5DC5A 4BZ7A 5EFBD 1CEVA 3Q9BA 5EF7A 1RLAA 4RN2A 3SFHA 3C0YA 3MZ6A 3M1RA 4BZ6A 1T67A 5THSA 4Q41A 3F07A 1ZPEA 4QA6A 1TA1A 5FCWA 1XFKA 3RQDA 1T69A 4Q3UA 1W22A 5CEVA 2VQWG 4ZUOA 5LI3A 4GSMA 4ITYA 3E6KA 1T4TA 1T4RA 4RHJA 4CEVA 3EZPA 3F0RA 4IXUA 4QA7A 1WVAA 4ZURA 3LP4A 4Q3PA 3SJTA 3CEVA 5G1CA 1T4SA 4GWDA 5D1DA 4GWCA 5EEFA 1TBJA 2AEBA 2CEVA 2V5WA 4IE1A 1HQ5A 4ZUQA 5EFGA 2ZAVA 1VKGA 2PLLA 5G1BA 4Q3RC 3MZ7A 4Q3VA 5G17A 3NIOA 4RHMA 3THJA 5ICNB 1PQ3A 3EZTA 5EFHA 1D3VA 2VQJA 5G12A 5HJAA 1T5GA 3TF3A 1HQGA 4ZUPA 1T4PA 4LY1A 4BZ8A 2PHOA
chains in the Genus database with same CATH topology
3MZ4A 3MZ3A 4RN0A 5G0JA 4BZ9A 1C3PA 5D1CA 1ZZ0A 5G1AA 5G3WA 3C0ZA 1C3RA 5DC6A 5BWZA 5G10A 1C3SA 4QA2A 5THTA 4QA0A 5FUEA 4QA5A 3C10A 2VQQA 3MENA 5EEKA 5EEMA 5G13A 1ZZ1A 3Q9CA 2V5XA 4RN1A 1T64A 2VQOA 3ZNRA 5G0GA 5DC8A 4ZUNA 2VCGA 5EFNA 4A69A 2GH6A 5EFJD 3Q9FA 4BKXB 3Q9EA 4QA4A 5THVA 5IWGA 3EW8A 5G0HA 4CBYA 4ZUMA 3EWFA 5G0YA 3MAXA 3SFFA 4CBTA 2VQMA 5JI5A 5EF8A 3ZNSA 4LXZA 4CQFA 1ZZ3A 5EFKB 5G0IA 3F06A 5THUA 5D1BA 4BZ5A 5IX0A 2VQVA 4QA1A 5A2SA 5EEIA 5G0XA 4QA3A 5EENA 5G11A 5DC7A 5DC5A 4BZ7A 5EFBD 3Q9BA 5EF7A 4RN2A 3SFHA 3C0YA 3MZ6A 4BZ6A 1T67A 5THSA 3F07A 4QA6A 5FCWA 3RQDA 1T69A 1W22A 4ZUOA 2VQWG 5LI3A 3EZPA 3F0RA 4QA7A 4ZURA 5G1CA 5D1DA 5EEFA 2V5WA 4ZUQA 5EFGA 1VKGA 5G1BA 3MZ7A 5G17A 5ICNB 3EZTA 5EFHA 2VQJA 5G12A 4ZUPA 4LY1A 4BZ8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3MZ4 A;  3MZ3 A;  4RN0 A;  5G0J A;  4BZ9 A;  1C3P A;  5D1C A;  1ZZ0 A;  5G1A A;  5G3W A;  3C0Z A;  1C3R A;  5DC6 A;  5BWZ A;  5G10 A;  1C3S A;  4QA2 A;  5THT A;  4QA0 A;  5FUE A;  4QA5 A;  3C10 A;  2VQQ A;  3MEN A;  5EEK A;  5EEM A;  5G13 A;  1ZZ1 A;  3Q9C A;  2V5X A;  4RN1 A;  1T64 A;  2VQO A;  3ZNR A;  5G0G A;  5DC8 A;  4ZUN A;  2VCG A;  5EFN A;  4A69 A;  2GH6 A;  5EFJ D;  3Q9F A;  4BKX B;  3Q9E A;  4QA4 A;  5THV A;  5IWG A;  3EW8 A;  5G0H A;  4CBY A;  4ZUM A;  3EWF A;  5G0Y A;  3MAX A;  3SFF A;  4CBT A;  2VQM A;  5JI5 A;  5EF8 A;  3ZNS A;  4LXZ A;  4CQF A;  1ZZ3 A;  5EFK B;  5G0I A;  3F06 A;  5THU A;  5D1B A;  4BZ5 A;  5IX0 A;  2VQV A;  4QA1 A;  5A2S A;  5EEI A;  5G0X A;  4QA3 A;  5EEN A;  5G11 A;  5DC7 A;  5DC5 A;  4BZ7 A;  5EFB D;  3Q9B A;  5EF7 A;  4RN2 A;  3SFH A;  3C0Y A;  3MZ6 A;  4BZ6 A;  1T67 A;  5THS A;  3F07 A;  4QA6 A;  5FCW A;  3RQD A;  1T69 A;  1W22 A;  4ZUO A;  2VQW G;  5LI3 A;  3EZP A;  3F0R A;  4QA7 A;  4ZUR A;  5G1C A;  5D1D A;  5EEF A;  2V5W A;  4ZUQ A;  5EFG A;  1VKG A;  5G1B A;  3MZ7 A;  5G17 A;  5ICN B;  3EZT A;  5EFH A;  2VQJ A;  5G12 A;  4ZUP A;  4LY1 A;  4BZ8 A; 
#chains in the Genus database with same CATH topology
 1WOI A;  4MXR A;  3MZ4 A;  4FCK A;  3THH A;  3MZ3 A;  1TBL A;  1GQ7 A;  4RN0 A;  5G0J A;  3MFV A;  2RLA A;  4RHQ A;  1WOH A;  3SL0 A;  4IE2 A;  3SL1 A;  3LHL A;  4BZ9 A;  1C3P A;  4FCI A;  5D1C A;  3E9B A;  4MYN A;  1ZZ0 A;  1HQH A;  5G1A A;  5G3W A;  1TBH A;  3C0Z A;  1C3R A;  3PZL A;  5HJ9 A;  5DC6 A;  3SKK A;  5G10 A;  5BWZ A;  2EF5 A;  1HQF A;  1C3S A;  3E6V A;  3F80 A;  4Q3S A;  3THE A;  3TH7 A;  4QA2 A;  5THT A;  1R1O A;  4QA0 A;  4IU5 A;  4MYF A;  4HZE A;  1P8M A;  4QA5 A;  4RHK A;  5FUE A;  3C10 A;  4Q3Q A;  2VQQ A;  4IE3 A;  2EF4 A;  3MEN A;  5EEK A;  5RLA A;  3MFW A;  5EEM A;  4GSV A;  1WVB A;  5G13 A;  3E8Z A;  1ZZ1 A;  4G3H A;  4MYL A;  3Q9C A;  2V5X A;  4Q42 A;  4RN1 A;  1T64 A;  2VQO A;  4DZ4 A;  4HWW A;  3ZNR A;  5G0G A;  1WOG A;  3GN0 A;  4I06 A;  5DC8 A;  3MMR A;  4ZUN A;  3GMZ A;  1P8Q A;  2VCG A;  3LP7 A;  3MJL A;  3NIQ A;  5EFN A;  4A69 A;  2GH6 A;  1P8N A;  4IU1 A;  4Q3R A;  3E8Q A;  4IU4 A;  5EFJ D;  3Q9F A;  4BKX B;  1P8S A;  3Q9E A;  4IU0 A;  2A0M A;  4QA4 A;  4RHL A;  3RLA A;  1GQ6 A;  4IXV A;  4Q3T A;  4RLA A;  5IWG A;  5THV A;  3EW8 A;  4MYK A;  5G0H A;  1P8O A;  4ZUM A;  4CBY A;  3EWF A;  5G0Y A;  2PHA A;  3KV2 A;  3MAX A;  3SFF A;  1T5F A;  1ZPG A;  4CBT A;  4RHI A;  2VQM A;  1HQX A;  5JI5 A;  5EF8 A;  3ZNS A;  4LXZ A;  4CQF A;  1P8R A;  1ZZ3 A;  5EFK B;  5G0I A;  3F06 A;  5THU A;  1P8P A;  5D1B A;  4BZ5 A;  5IX0 A;  2VQV A;  4QA1 A;  5A2S A;  4GSZ A;  4HXQ A;  5EEI A;  5G0X A;  4QA3 A;  4Q40 A;  2EIV A;  5EEN A;  3DJ8 A;  3NIP A;  5DC7 A;  5G11 A;  5DC5 A;  4BZ7 A;  5EFB D;  1CEV A;  3Q9B A;  5EF7 A;  1RLA A;  4RN2 A;  3SFH A;  3C0Y A;  3MZ6 A;  3M1R A;  4BZ6 A;  1T67 A;  5THS A;  4Q41 A;  3F07 A;  1ZPE A;  4QA6 A;  1TA1 A;  5FCW A;  1XFK A;  3RQD A;  1T69 A;  4Q3U A;  1W22 A;  5CEV A;  2VQW G;  4ZUO A;  5LI3 A;  4GSM A;  4ITY A;  3E6K A;  1T4T A;  1T4R A;  4RHJ A;  4CEV A;  3EZP A;  3F0R A;  4IXU A;  4QA7 A;  1WVA A;  4ZUR A;  3LP4 A;  4Q3P A;  3SJT A;  3CEV A;  5G1C A;  1T4S A;  4GWD A;  5D1D A;  4GWC A;  5EEF A;  1TBJ A;  2AEB A;  2CEV A;  2V5W A;  4IE1 A;  1HQ5 A;  4ZUQ A;  5EFG A;  2ZAV A;  1VKG A;  2PLL A;  5G1B A;  4Q3R C;  3MZ7 A;  4Q3V A;  5G17 A;  3NIO A;  4RHM A;  3THJ A;  5ICN B;  1PQ3 A;  3EZT A;  5EFH A;  1D3V A;  2VQJ A;  5G12 A;  5HJA A;  1T5G A;  3TF3 A;  1HQG A;  4ZUP A;  1T4P A;  4LY1 A;  4BZ8 A;  2PHO A; 
#chains in the Genus database with same CATH homology
 3MZ4 A;  3MZ3 A;  4RN0 A;  5G0J A;  4BZ9 A;  1C3P A;  5D1C A;  1ZZ0 A;  5G1A A;  5G3W A;  3C0Z A;  1C3R A;  5DC6 A;  5BWZ A;  5G10 A;  1C3S A;  4QA2 A;  5THT A;  4QA0 A;  5FUE A;  4QA5 A;  3C10 A;  2VQQ A;  3MEN A;  5EEK A;  5EEM A;  5G13 A;  1ZZ1 A;  3Q9C A;  2V5X A;  4RN1 A;  1T64 A;  2VQO A;  3ZNR A;  5G0G A;  5DC8 A;  4ZUN A;  2VCG A;  5EFN A;  4A69 A;  2GH6 A;  5EFJ D;  3Q9F A;  4BKX B;  3Q9E A;  4QA4 A;  5THV A;  5IWG A;  3EW8 A;  5G0H A;  4CBY A;  4ZUM A;  3EWF A;  5G0Y A;  3MAX A;  3SFF A;  4CBT A;  2VQM A;  5JI5 A;  5EF8 A;  3ZNS A;  4LXZ A;  4CQF A;  1ZZ3 A;  5EFK B;  5G0I A;  3F06 A;  5THU A;  5D1B A;  4BZ5 A;  5IX0 A;  2VQV A;  4QA1 A;  5A2S A;  5EEI A;  5G0X A;  4QA3 A;  5EEN A;  5G11 A;  5DC7 A;  5DC5 A;  4BZ7 A;  5EFB D;  3Q9B A;  5EF7 A;  4RN2 A;  3SFH A;  3C0Y A;  3MZ6 A;  4BZ6 A;  1T67 A;  5THS A;  3F07 A;  4QA6 A;  5FCW A;  3RQD A;  1T69 A;  1W22 A;  4ZUO A;  2VQW G;  5LI3 A;  3EZP A;  3F0R A;  4QA7 A;  4ZUR A;  5G1C A;  5D1D A;  5EEF A;  2V5W A;  4ZUQ A;  5EFG A;  1VKG A;  5G1B A;  3MZ7 A;  5G17 A;  5ICN B;  3EZT A;  5EFH A;  2VQJ A;  5G12 A;  4ZUP A;  4LY1 A;  4BZ8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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