3AIAA

Crystal structure of duf358 reveals a putative spout-class methltransferase
Total Genus 69
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
69
Knots found
sequence length
200
structure length
200
Chain Sequence
MREFIFKANKTITSSDINLKDLPGSCGRLDLLCRCVSDAFFLSHDIRRDVVFYAVLYGQPNPPVCIKFVGSELKKVSPDERNIAIFIKKALKKFEELDEEQRKDWNQSTPGIYVRRLGFRNLVLEKLEEGKNIYYLHMNGEDVENVDIENPVFIIGDHIGIGEEDERFLDEIKAKRISLSPLELHANHCITIIHNVLDKK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords UPF0217 protein MJ1640
publication title Crystal structure of Mj1640/DUF358 protein reveals a putative SPOUT-class RNA methyltransferase
pubmed doi rcsb
source organism Methanocaldococcus jannaschii
total genus 69
structure length 200
sequence length 200
chains with identical sequence B
other databases KnotProt 2.0: K +31
ec nomenclature ec 2.1.1.257: tRNA (pseudouridine(54)-N(1))-methyltransferase.
pdb deposition date 2010-05-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04013 Methyltrn_RNA_2 Putative SAM-dependent RNA methyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 3aiaA00
4YQ7A 4YQDA 4YQKA 1X7PA 5CO4A 4H3ZA 1MXIA 4CNFA 4YQPA 4YVGA 1V6ZA 2I6DA 1NXZA 1P9PA 4MCCA 4XBOA 4PZKA 2V3KA 1UAJA 3AXZA 4YVKA 4MCDA 4CNEA 4YQBA 3AI9X 4YVIA 3DCMX 5D9FA 4YQ6A 4L69A 3IEFA 3KW2A 4YQOA 4E8BA 1K3RA 4X3LA 3NK6A 4YQCA 4YQ5A 1UAMA 1VHKA 4YPXA 3E5YA 1X7OA 4YQRA 4YPWA 1ZJRA 4KGNA 1UAKA 4YQQA 4YQTA 4X3MA 5GM8A 3OIIA 2YY8A 3ILKA 3L8UA 4CNDA 3KY7A 4J3CA 4YVHA 5GMBA 1NS5A 1GZ0A 3AIAA 1O6DA 1TO0A 4YPZA 3N4JA 4H3YA 2HA8A 3OINA 4YPYA 4FAKA 3KTYA 4YQ1A 4YQIA 4YQJA 4JALA 4MCBA 4CNGA 4YQ9A 1V2XA 4YQ2A 1Z85A 3ONPA 4JAKA 2QMMA 3OIJA 1UALA 3GYQA 4YQSA 1J85A 4IG6A 4YQ8A 4YQAA 5GMCA 3O7BA 2CX8A 3BBDA 1VHYA 3NK7A 4YQGA 1VH0A 4RG1A 1OY5A 1IPAA 3BBHA 2EGWA 3KNUA 2EGVA 5FAIA 2QWVA 4KDZA 4YVJA 4YQ0A 3BBEA 4YQLA 4YQNA 3QUVA 4YQ4A 3IC6A 4YQ3A 3N4KA 2Z0YA 2V3JA 2O3AA
chains in the Genus database with same CATH superfamily
4YQ7A 4YQDA 4YQKA 1X7PA 5CO4A 4H3ZA 1MXIA 4CNFA 4YQPA 4YVGA 1V6ZA 2I6DA 4JWGA 1NXZA 1P9PA 4MCCA 4XBOA 4PZKA 2V3KA 1UAJA 3AXZA 4YVKA 4JWHA 4MCDA 4CNEA 4JWJA 4YQBA 3AI9X 4YVIA 3DCMX 5D9FA 4YQ6A 4L69A 3IEFA 3KW2A 4JWFA 4YQOA 4E8BA 1K3RA 4X3LA 3NK6A 4YQCA 4YQ5A 1UAMA 1VHKA 4YPXA 3E5YA 1X7OA 4YQRA 4YPWA 1ZJRA 4KGNA 1UAKA 4YQQA 4YQTA 4X3MA 5GM8A 3OIIA 2YY8A 3ILKA 3L8UA 4CNDA 3KY7A 4J3CA 4YVHA 5GMBA 1NS5A 1GZ0A 3AIAA 1O6DA 1TO0A 4YPZA 3N4JA 4H3YA 2HA8A 3OINA 4YPYA 4FAKA 3KTYA 4YQ1A 4YQIA 4YQJA 4JALA 4MCBA 4CNGA 4YQ9A 1V2XA 4YQ2A 1Z85A 3ONPA 4JAKA 2QMMA 3OIJA 1UALA 3GYQA 4YQSA 1J85A 4IG6A 4YQ8A 4YQAA 5GMCA 3O7BA 2CX8A 3BBDA 1VHYA 4FMWA 3NK7A 4YQGA 1VH0A 4RG1A 1OY5A 1IPAA 3BBHA 2EGWA 3KNUA 2EGVA 5FAIA 2QWVA 4KDZA 4YVJA 4YQ0A 3BBEA 4YQLA 4YQNA 3QUVA 4YQ4A 3IC6A 4YQ3A 3N4KA 2Z0YA 2V3JA 2O3AA
chains in the Genus database with same CATH topology
4YQ7A 4YQDA 4YQKA 1X7PA 5CO4A 4H3ZA 1MXIA 4CNFA 4YQPA 4YVGA 1V6ZA 2I6DA 4JWGA 1NXZA 1P9PA 4MCCA 4XBOA 4PZKA 2V3KA 1UAJA 3AXZA 4YVKA 4JWHA 4MCDA 4CNEA 4JWJA 4YQBA 3AI9X 4YVIA 3DCMX 5D9FA 4YQ6A 4L69A 3IEFA 3KW2A 4JWFA 4YQOA 4E8BA 1K3RA 4X3LA 3NK6A 4YQCA 4YQ5A 1UAMA 1VHKA 4YPXA 3E5YA 1X7OA 4YQRA 4YPWA 1ZJRA 4KGNA 1UAKA 4YQQA 4YQTA 4X3MA 5GM8A 3OIIA 2YY8A 3ILKA 3L8UA 4CNDA 3KY7A 4J3CA 4YVHA 5GMBA 1NS5A 1GZ0A 3AIAA 1O6DA 1TO0A 4YPZA 3N4JA 4H3YA 2HA8A 3OINA 4YPYA 4FAKA 3KTYA 4YQ1A 4YQIA 4YQJA 4JALA 4MCBA 4CNGA 4YQ9A 1V2XA 4YQ2A 1Z85A 3ONPA 4JAKA 2QMMA 3OIJA 1UALA 3GYQA 4YQSA 1J85A 4IG6A 4YQ8A 4YQAA 5GMCA 3O7BA 2CX8A 3BBDA 1VHYA 4FMWA 3NK7A 4YQGA 1VH0A 4RG1A 1OY5A 1IPAA 3BBHA 2EGWA 3KNUA 2EGVA 5FAIA 2QWVA 4KDZA 4YVJA 4YQ0A 3BBEA 4YQLA 4YQNA 3QUVA 4YQ4A 3IC6A 4YQ3A 3N4KA 2Z0YA 2V3JA 2O3AA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4YQ7 A;  4YQD A;  4YQK A;  1X7P A;  5CO4 A;  4H3Z A;  1MXI A;  4CNF A;  4YQP A;  4YVG A;  1V6Z A;  2I6D A;  1NXZ A;  1P9P A;  4MCC A;  4XBO A;  4PZK A;  2V3K A;  1UAJ A;  3AXZ A;  4YVK A;  4MCD A;  4CNE A;  4YQB A;  3AI9 X;  4YVI A;  3DCM X;  5D9F A;  4YQ6 A;  4L69 A;  3IEF A;  3KW2 A;  4YQO A;  4E8B A;  1K3R A;  4X3L A;  3NK6 A;  4YQC A;  4YQ5 A;  1UAM A;  1VHK A;  4YPX A;  3E5Y A;  1X7O A;  4YQR A;  4YPW A;  1ZJR A;  4KGN A;  1UAK A;  4YQQ A;  4YQT A;  4X3M A;  5GM8 A;  3OII A;  2YY8 A;  3ILK A;  3L8U A;  4CND A;  3KY7 A;  4J3C A;  4YVH A;  5GMB A;  1NS5 A;  1GZ0 A;  3AIA A;  1O6D A;  1TO0 A;  4YPZ A;  3N4J A;  4H3Y A;  2HA8 A;  3OIN A;  4YPY A;  4FAK A;  3KTY A;  4YQ1 A;  4YQI A;  4YQJ A;  4JAL A;  4MCB A;  4CNG A;  4YQ9 A;  1V2X A;  4YQ2 A;  1Z85 A;  3ONP A;  4JAK A;  2QMM A;  3OIJ A;  1UAL A;  3GYQ A;  4YQS A;  1J85 A;  4IG6 A;  4YQ8 A;  4YQA A;  5GMC A;  3O7B A;  2CX8 A;  3BBD A;  1VHY A;  3NK7 A;  4YQG A;  1VH0 A;  4RG1 A;  1OY5 A;  1IPA A;  3BBH A;  2EGW A;  3KNU A;  2EGV A;  5FAI A;  2QWV A;  4KDZ A;  4YVJ A;  4YQ0 A;  3BBE A;  4YQL A;  4YQN A;  3QUV A;  4YQ4 A;  3IC6 A;  4YQ3 A;  3N4K A;  2Z0Y A;  2V3J A;  2O3A A; 
#chains in the Genus database with same CATH topology
 4YQ7 A;  4YQD A;  4YQK A;  1X7P A;  5CO4 A;  4H3Z A;  1MXI A;  4CNF A;  4YQP A;  4YVG A;  1V6Z A;  2I6D A;  4JWG A;  1NXZ A;  1P9P A;  4MCC A;  4XBO A;  4PZK A;  2V3K A;  1UAJ A;  3AXZ A;  4YVK A;  4JWH A;  4MCD A;  4CNE A;  4JWJ A;  4YQB A;  3AI9 X;  4YVI A;  3DCM X;  5D9F A;  4YQ6 A;  4L69 A;  3IEF A;  3KW2 A;  4JWF A;  4YQO A;  4E8B A;  1K3R A;  4X3L A;  3NK6 A;  4YQC A;  4YQ5 A;  1UAM A;  1VHK A;  4YPX A;  3E5Y A;  1X7O A;  4YQR A;  4YPW A;  1ZJR A;  4KGN A;  1UAK A;  4YQQ A;  4YQT A;  4X3M A;  5GM8 A;  3OII A;  2YY8 A;  3ILK A;  3L8U A;  4CND A;  3KY7 A;  4J3C A;  4YVH A;  5GMB A;  1NS5 A;  1GZ0 A;  3AIA A;  1O6D A;  1TO0 A;  4YPZ A;  3N4J A;  4H3Y A;  2HA8 A;  3OIN A;  4YPY A;  4FAK A;  3KTY A;  4YQ1 A;  4YQI A;  4YQJ A;  4JAL A;  4MCB A;  4CNG A;  4YQ9 A;  1V2X A;  4YQ2 A;  1Z85 A;  3ONP A;  4JAK A;  2QMM A;  3OIJ A;  1UAL A;  3GYQ A;  4YQS A;  1J85 A;  4IG6 A;  4YQ8 A;  4YQA A;  5GMC A;  3O7B A;  2CX8 A;  3BBD A;  1VHY A;  4FMW A;  3NK7 A;  4YQG A;  1VH0 A;  4RG1 A;  1OY5 A;  1IPA A;  3BBH A;  2EGW A;  3KNU A;  2EGV A;  5FAI A;  2QWV A;  4KDZ A;  4YVJ A;  4YQ0 A;  3BBE A;  4YQL A;  4YQN A;  3QUV A;  4YQ4 A;  3IC6 A;  4YQ3 A;  3N4K A;  2Z0Y A;  2V3J A;  2O3A A; 
#chains in the Genus database with same CATH homology
 4YQ7 A;  4YQD A;  4YQK A;  1X7P A;  5CO4 A;  4H3Z A;  1MXI A;  4CNF A;  4YQP A;  4YVG A;  1V6Z A;  2I6D A;  4JWG A;  1NXZ A;  1P9P A;  4MCC A;  4XBO A;  4PZK A;  2V3K A;  1UAJ A;  3AXZ A;  4YVK A;  4JWH A;  4MCD A;  4CNE A;  4JWJ A;  4YQB A;  3AI9 X;  4YVI A;  3DCM X;  5D9F A;  4YQ6 A;  4L69 A;  3IEF A;  3KW2 A;  4JWF A;  4YQO A;  4E8B A;  1K3R A;  4X3L A;  3NK6 A;  4YQC A;  4YQ5 A;  1UAM A;  1VHK A;  4YPX A;  3E5Y A;  1X7O A;  4YQR A;  4YPW A;  1ZJR A;  4KGN A;  1UAK A;  4YQQ A;  4YQT A;  4X3M A;  5GM8 A;  3OII A;  2YY8 A;  3ILK A;  3L8U A;  4CND A;  3KY7 A;  4J3C A;  4YVH A;  5GMB A;  1NS5 A;  1GZ0 A;  3AIA A;  1O6D A;  1TO0 A;  4YPZ A;  3N4J A;  4H3Y A;  2HA8 A;  3OIN A;  4YPY A;  4FAK A;  3KTY A;  4YQ1 A;  4YQI A;  4YQJ A;  4JAL A;  4MCB A;  4CNG A;  4YQ9 A;  1V2X A;  4YQ2 A;  1Z85 A;  3ONP A;  4JAK A;  2QMM A;  3OIJ A;  1UAL A;  3GYQ A;  4YQS A;  1J85 A;  4IG6 A;  4YQ8 A;  4YQA A;  5GMC A;  3O7B A;  2CX8 A;  3BBD A;  1VHY A;  4FMW A;  3NK7 A;  4YQG A;  1VH0 A;  4RG1 A;  1OY5 A;  1IPA A;  3BBH A;  2EGW A;  3KNU A;  2EGV A;  5FAI A;  2QWV A;  4KDZ A;  4YVJ A;  4YQ0 A;  3BBE A;  4YQL A;  4YQN A;  3QUV A;  4YQ4 A;  3IC6 A;  4YQ3 A;  3N4K A;  2Z0Y A;  2V3J A;  2O3A A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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