3C75L

Paracoccus versutus methylamine dehydrogenase in complex with amicyanin
Total Genus 32
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
32
Knots found
sequence length
125
structure length
124
Chain Sequence
VDPRAKWQPQDNDIQACDYWRHCSIDGNICDCSGGSLTNCPPGTKLATASVASCYNPTDGQSYLIAYRDCCGYNVSGRCPCLNTEGELPVYRPEFANDIIWCFGAEDDAMTYHCTISPIVGKAS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Methylamine dehydrogenase heavy chain
publication title Structural comparison of crystal and solution states of the 138 kDa complex of methylamine dehydrogenase and amicyanin from Paracoccus versutus.
pubmed doi rcsb
total genus 32
structure length 124
sequence length 125
chains with identical sequence M
other databases KnotProt 2.0: K
ec nomenclature ec 1.4.9.1: Methylamine dehydrogenase (amicyanin).
pdb deposition date 2008-02-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
L PF02975 Me-amine-dh_L Methylamine dehydrogenase, L chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.30.10 Mainly Beta Sandwich Electron Transport Ethylamine Dehydrogenase Methylamine/Aralkylamine dehydrogenase light chain 3c75L00
2I0RD 1MDAL 2AGYD 2AGXD 2MADL 3L4OC 4FA4C 2J57K 2IUPD 2IUVD 3SJLC 2HXCD 2Q7QD 3C75L 3SXTC 4FB1C 2IURD 2GC4B 2OK4D 4L1QC 2OIZD 2AGLD 3SVWC 3PXTC 1MG2B 4L3HC 4FA5C 4FANC 2HKRD 2AH1D 4FA9C 3RN0C 4FAVC 4K3IC 2I0TD 2J55L 4O1QC 2IAAB 4Y5RC 3RLMC 2BBKL 3L4MC 4L3GC 3RN1C 2HKMD 3PXWC 3PXSC 3RMZC 2J56L 2OJYD 2H3XB 2AH0D 2I0SD 2AGWD 2IUQD 2OK6D 3ORVC 3SLEC 2HJ4D 4FA1C 2AGZD 1MAFL 1MG3B 3SWSC 2GC7B 2HJBD 2MTAL 1MAEL 2H47B
chains in the Genus database with same CATH superfamily
2I0RD 1MDAL 2AGYD 2AGXD 2MADL 3L4OC 4FA4C 2J57K 2IUPD 2IUVD 3SJLC 2HXCD 2Q7QD 3C75L 3SXTC 4FB1C 2IURD 2GC4B 2OK4D 4L1QC 2OIZD 2AGLD 3SVWC 3PXTC 1MG2B 4L3HC 4FA5C 4FANC 2HKRD 2AH1D 4FA9C 3RN0C 4FAVC 4K3IC 2I0TD 2J55L 4O1QC 2IAAB 4Y5RC 3RLMC 2BBKL 3L4MC 4L3GC 3RN1C 2HKMD 3PXWC 3PXSC 3RMZC 2J56L 2OJYD 2H3XB 2AH0D 2I0SD 2AGWD 2IUQD 2OK6D 3ORVC 3SLEC 2HJ4D 4FA1C 2AGZD 1MAFL 1MG3B 3SWSC 2GC7B 2HJBD 2MTAL 1MAEL 2H47B
chains in the Genus database with same CATH topology
2I0RD 1MDAL 2AGYD 2AGXD 2MADL 3L4OC 4FA4C 2J57K 2IUPD 2IUVD 3SJLC 2HXCD 2Q7QD 3C75L 3SXTC 4FB1C 2IURD 2GC4B 2OK4D 4L1QC 2OIZD 2AGLD 3SVWC 3PXTC 1MG2B 4L3HC 4FA5C 4FANC 2HKRD 2AH1D 4FA9C 3RN0C 4FAVC 4K3IC 2I0TD 2J55L 4O1QC 2IAAB 4Y5RC 3RLMC 2BBKL 3L4MC 4L3GC 3RN1C 2HKMD 3PXWC 3PXSC 3RMZC 2J56L 2OJYD 2H3XB 2AH0D 2I0SD 2AGWD 2IUQD 2OK6D 3ORVC 3SLEC 2HJ4D 4FA1C 2AGZD 1MAFL 1MG3B 3SWSC 2GC7B 2HJBD 2MTAL 1MAEL 2H47B
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2I0R D;  1MDA L;  2AGY D;  2AGX D;  2MAD L;  3L4O C;  4FA4 C;  2J57 K;  2IUP D;  2IUV D;  3SJL C;  2HXC D;  2Q7Q D;  3C75 L;  3SXT C;  4FB1 C;  2IUR D;  2GC4 B;  2OK4 D;  4L1Q C;  2OIZ D;  2AGL D;  3SVW C;  3PXT C;  1MG2 B;  4L3H C;  4FA5 C;  4FAN C;  2HKR D;  2AH1 D;  4FA9 C;  3RN0 C;  4FAV C;  4K3I C;  2I0T D;  2J55 L;  4O1Q C;  2IAA B;  4Y5R C;  3RLM C;  2BBK L;  3L4M C;  4L3G C;  3RN1 C;  2HKM D;  3PXW C;  3PXS C;  3RMZ C;  2J56 L;  2OJY D;  2H3X B;  2AH0 D;  2I0S D;  2AGW D;  2IUQ D;  2OK6 D;  3ORV C;  3SLE C;  2HJ4 D;  4FA1 C;  2AGZ D;  1MAF L;  1MG3 B;  3SWS C;  2GC7 B;  2HJB D;  2MTA L;  1MAE L;  2H47 B; 
#chains in the Genus database with same CATH topology
 2I0R D;  1MDA L;  2AGY D;  2AGX D;  2MAD L;  3L4O C;  4FA4 C;  2J57 K;  2IUP D;  2IUV D;  3SJL C;  2HXC D;  2Q7Q D;  3C75 L;  3SXT C;  4FB1 C;  2IUR D;  2GC4 B;  2OK4 D;  4L1Q C;  2OIZ D;  2AGL D;  3SVW C;  3PXT C;  1MG2 B;  4L3H C;  4FA5 C;  4FAN C;  2HKR D;  2AH1 D;  4FA9 C;  3RN0 C;  4FAV C;  4K3I C;  2I0T D;  2J55 L;  4O1Q C;  2IAA B;  4Y5R C;  3RLM C;  2BBK L;  3L4M C;  4L3G C;  3RN1 C;  2HKM D;  3PXW C;  3PXS C;  3RMZ C;  2J56 L;  2OJY D;  2H3X B;  2AH0 D;  2I0S D;  2AGW D;  2IUQ D;  2OK6 D;  3ORV C;  3SLE C;  2HJ4 D;  4FA1 C;  2AGZ D;  1MAF L;  1MG3 B;  3SWS C;  2GC7 B;  2HJB D;  2MTA L;  1MAE L;  2H47 B; 
#chains in the Genus database with same CATH homology
 2I0R D;  1MDA L;  2AGY D;  2AGX D;  2MAD L;  3L4O C;  4FA4 C;  2J57 K;  2IUP D;  2IUV D;  3SJL C;  2HXC D;  2Q7Q D;  3C75 L;  3SXT C;  4FB1 C;  2IUR D;  2GC4 B;  2OK4 D;  4L1Q C;  2OIZ D;  2AGL D;  3SVW C;  3PXT C;  1MG2 B;  4L3H C;  4FA5 C;  4FAN C;  2HKR D;  2AH1 D;  4FA9 C;  3RN0 C;  4FAV C;  4K3I C;  2I0T D;  2J55 L;  4O1Q C;  2IAA B;  4Y5R C;  3RLM C;  2BBK L;  3L4M C;  4L3G C;  3RN1 C;  2HKM D;  3PXW C;  3PXS C;  3RMZ C;  2J56 L;  2OJY D;  2H3X B;  2AH0 D;  2I0S D;  2AGW D;  2IUQ D;  2OK6 D;  3ORV C;  3SLE C;  2HJ4 D;  4FA1 C;  2AGZ D;  1MAF L;  1MG3 B;  3SWS C;  2GC7 B;  2HJB D;  2MTA L;  1MAE L;  2H47 B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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