3DYCA

Structure of e322y alkaline phosphatase in complex with inorganic phosphate
Total Genus 156
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
156
Knots found
sequence length
446
structure length
446
Chain Sequence
MPVLENRAAQGDITAPGGARRLTGDQTAALRDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKKTGKPDYVTDSAASATAWSTGVKTYNGALGVDIHEKDHPTILEMAKAAGLATGNVSTAELQDATPAALVAHVTSRKCYGPSATSEKCPGNALEKGGKGSITEQLLNARADVTLGGGAKTFAETATAGEWQGKTLREQAQARGYQLVSDAASLNSVTEANQQKPLLGLFADGNMPVRWLGPKATYHGNIDKPAVTCTPNPQRNDSVPTLAQMTDKAIELLSKNEKGFFLQVYGASIDKQDHAANPCGQIGETVDLDEAVQRALEFAKKEGNTLVIVTADHAHASQIVAPDTKAPGLTQALNTKDGAVMVMSYGNSEEDSQEHTGSQLRIAAYGPHAANVVGLTDQTDLFYTMKAALGLK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
molecule keywords Alkaline phosphatase
publication title Comparative Enzymology in the Alkaline Phosphatase Superfamily to Determine the Catalytic Role of an Active-Site Metal Ion.
pubmed doi rcsb
source organism Escherichia coli
total genus 156
structure length 446
sequence length 446
chains with identical sequence B
other databases KnotProt 2.0: S +31
ec nomenclature ec 3.1.3.1: Alkaline phosphatase.
pdb deposition date 2008-07-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00245 Alk_phosphatase Alkaline phosphatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 3dycA00
4KAYA 3Q3QA 4CYSA 1ALIA 2W5SA 3M8ZA 1AJCA 5INHA 3E2DA 1HDHA 3MK0A 1N2LA 4KM4A 4LR8A 3TX0A 1EI6A 2XR9A 3UNYA 2XRGA 5TJ3A 3IDDA 1E33P 4LQYA 5DLTA 3BDGB 5L0KA 3NKMA 1Y7AA 2IFYA 3NKPA 4UORA 2W5QA 3NKOA 4LR9A 4CYRA 5AJ9A 1E1ZP 4KJDA 3B5QA 3KD8A 5LQQA 4LREA 1EJJA 1URBA 3M7VA 4N7TA 1ZEFA 2W5RA 3T02A 2W5WA 3BDHA 4ZG7A 3NVLA 2IUCA 1EW2A 1KHLA 2GSNA 1KHKA 1N2KA 2RH6A 4CXKA 5IJSA 1ALJA 1ELXA 4CXSA 4GTXA 3MK2A 1HQAA 4LR7A 1ED8A 4UPIA 4KAVA 5EGEA 4MHXA 1E2SP 3UN5A 4MY4A 5GOVA 5L0EA 2W5TA 3TG0A 4LRFA 3WAXA 2GSUA 1KH9A 1KHJA 4UOOA 4YR1A 5GRRA 5KXAA 1ELZA 2ZKTA 3T01A 4CXUA 1HJKA 3BDFA 1AJBA 1ALKA 4UPLA 3WBHA 2D1GA 4GTWA 3DPCA 3WAVA 1EW9A 4LRDA 1SHNA 3MK1A 4KJGA 3ED4A 3UN3A 4FDJA 1EQJA 1ZEDA 1ANIA 5HRTA 5L0BA 1O99A 2W5XA 3SZZA 5EGHA 1O98A 1E3CP 1EW8A 3M8YA 4LR2A 4UOPA 3UN2A 5C66A 5LRNA 1FSUA 4B56A 4ZGAA 3M8WA 3UO0A 3BDGA 1AUKA 2W5VA 2VQRA 2GSOA 1P49A 1KH5A 3WAWA 1AJAA 1K7HA 1KH7A 4NWJA 1KHNA 1URAA 5K4PA 4QAXA 3NKQA 2W8SA 2GLQA 3IGZB 1ZEBA 2IUCB 1ELYA 4UPKA 4NWXA 1Y6VA 5DLWA 3DYCA 3SZYA 3TWZA 1KH4A 5DLVA 2QZUA 2ANHA 4LRCA 4GTYA 3NKNA 3CMRA 4ZG9A 2GA3A 3NKRA 1ED9A 1ALHA 2W8DA 3IGYB 4TN0A 5IJQA 3T00A 1SHQA 3OT9A 3A52A 2X98A 5LRMA 4LRBA 5LIAA 4MIVA 2G9YA 1AJDA 4LRAA 1ANJA 1B8JA 4UPHA 3LXQA 3WAYA 4GTZA 4ZG6A 4FDIA
chains in the Genus database with same CATH superfamily
4KAYA 3Q3QA 4CYSA 1ALIA 2W5SA 3M8ZA 1AJCA 5INHA 3E2DA 1HDHA 3MK0A 1N2LA 4KM4A 4LR8A 3TX0A 1EI6A 2XR9A 3UNYA 2XRGA 5TJ3A 3IDDA 1E33P 4LQYA 5DLTA 3BDGB 5L0KA 3NKMA 1Y7AA 2IFYA 3NKPA 4UORA 2W5QA 3NKOA 4LR9A 4CYRA 5AJ9A 1E1ZP 4KJDA 3B5QA 3KD8A 5LQQA 4LREA 1EJJA 1URBA 3M7VA 4N7TA 1ZEFA 2W5RA 3T02A 2W5WA 3BDHA 4ZG7A 3NVLA 2IUCA 1EW2A 1KHLA 2GSNA 1KHKA 1N2KA 2RH6A 4CXKA 5IJSA 1ALJA 1ELXA 4CXSA 4GTXA 3MK2A 1HQAA 4LR7A 1ED8A 4UPIA 4KAVA 5EGEA 4MHXA 1E2SP 3UN5A 4MY4A 5GOVA 5L0EA 2W5TA 3TG0A 4LRFA 3WAXA 2GSUA 1KH9A 1KHJA 4UOOA 4YR1A 5GRRA 5KXAA 1ELZA 2ZKTA 3T01A 4CXUA 1HJKA 3BDFA 1AJBA 1ALKA 4UPLA 3WBHA 2D1GA 4GTWA 3DPCA 3WAVA 1EW9A 4LRDA 1SHNA 3MK1A 4KJGA 3ED4A 3UN3A 4FDJA 1EQJA 1ZEDA 1ANIA 5HRTA 5L0BA 1O99A 2W5XA 3SZZA 5EGHA 1O98A 1E3CP 1EW8A 3M8YA 4LR2A 4UOPA 3UN2A 5C66A 5LRNA 1FSUA 4B56A 4ZGAA 3M8WA 3UO0A 3BDGA 1AUKA 2W5VA 2VQRA 2GSOA 1P49A 1KH5A 3WAWA 1AJAA 1K7HA 1KH7A 4NWJA 1KHNA 1URAA 5K4PA 4QAXA 3NKQA 2W8SA 2GLQA 3IGZB 1ZEBA 2IUCB 1ELYA 4UPKA 4NWXA 1Y6VA 5DLWA 3DYCA 3SZYA 3TWZA 1KH4A 5DLVA 2QZUA 2ANHA 4LRCA 4GTYA 3NKNA 3CMRA 4ZG9A 2GA3A 3NKRA 1ED9A 1ALHA 2W8DA 3IGYB 4TN0A 5IJQA 3T00A 1SHQA 3OT9A 3A52A 2X98A 5LRMA 4LRBA 5LIAA 4MIVA 2G9YA 1AJDA 4LRAA 1ANJA 1B8JA 4UPHA 3LXQA 3WAYA 4GTZA 4ZG6A 4FDIA
chains in the Genus database with same CATH topology
4KAYA 3Q3QA 4CYSA 1ALIA 2W5SA 3M8ZA 1AJCA 5INHA 3E2DA 1HDHA 3MK0A 1N2LA 4KM4A 4LR8A 3TX0A 1EI6A 2XR9A 3UNYA 2XRGA 5TJ3A 3IDDA 1E33P 4LQYA 5DLTA 3BDGB 5L0KA 3NKMA 1Y7AA 2IFYA 3NKPA 4UORA 2W5QA 3NKOA 4LR9A 4CYRA 5AJ9A 1E1ZP 4KJDA 3B5QA 3KD8A 5LQQA 4LREA 1EJJA 1URBA 3M7VA 4N7TA 1ZEFA 2W5RA 3T02A 2W5WA 3BDHA 4ZG7A 3NVLA 2IUCA 1EW2A 1KHLA 2GSNA 1KHKA 1N2KA 2RH6A 4CXKA 5IJSA 1ALJA 1ELXA 4CXSA 4GTXA 3MK2A 1HQAA 4LR7A 1ED8A 4UPIA 4KAVA 5EGEA 4MHXA 1E2SP 3UN5A 4MY4A 5GOVA 5L0EA 2W5TA 3TG0A 4LRFA 3WAXA 2GSUA 1KH9A 1KHJA 4UOOA 4YR1A 5GRRA 5KXAA 1ELZA 2ZKTA 3T01A 4CXUA 1HJKA 3BDFA 1AJBA 1ALKA 4UPLA 3WBHA 2D1GA 4GTWA 3DPCA 3WAVA 1EW9A 4LRDA 1SHNA 3MK1A 4KJGA 3ED4A 3UN3A 4FDJA 1EQJA 1ZEDA 1ANIA 5HRTA 5L0BA 1O99A 2W5XA 3SZZA 5EGHA 1O98A 1E3CP 1EW8A 3M8YA 4LR2A 4UOPA 3UN2A 5C66A 5LRNA 1FSUA 4B56A 4ZGAA 3M8WA 3UO0A 3BDGA 1AUKA 2W5VA 2VQRA 2GSOA 1P49A 1KH5A 3WAWA 1AJAA 1K7HA 1KH7A 4NWJA 1KHNA 1URAA 5K4PA 4QAXA 3NKQA 2W8SA 2GLQA 3IGZB 1ZEBA 2IUCB 1ELYA 4UPKA 4NWXA 1Y6VA 5DLWA 3DYCA 3SZYA 3TWZA 1KH4A 5DLVA 2QZUA 2ANHA 4LRCA 4GTYA 3NKNA 3CMRA 4ZG9A 2GA3A 3NKRA 1ED9A 1ALHA 2W8DA 3IGYB 4TN0A 5IJQA 3T00A 1SHQA 3OT9A 3A52A 2X98A 5LRMA 4LRBA 5LIAA 4MIVA 2G9YA 1AJDA 4LRAA 1ANJA 1B8JA 4UPHA 3LXQA 3WAYA 4GTZA 4ZG6A 4FDIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4KAY A;  3Q3Q A;  4CYS A;  1ALI A;  2W5S A;  3M8Z A;  1AJC A;  5INH A;  3E2D A;  1HDH A;  3MK0 A;  1N2L A;  4KM4 A;  4LR8 A;  3TX0 A;  1EI6 A;  2XR9 A;  3UNY A;  2XRG A;  5TJ3 A;  3IDD A;  1E33 P;  4LQY A;  5DLT A;  3BDG B;  5L0K A;  3NKM A;  1Y7A A;  2IFY A;  3NKP A;  4UOR A;  2W5Q A;  3NKO A;  4LR9 A;  4CYR A;  5AJ9 A;  1E1Z P;  4KJD A;  3B5Q A;  3KD8 A;  5LQQ A;  4LRE A;  1EJJ A;  1URB A;  3M7V A;  4N7T A;  1ZEF A;  2W5R A;  3T02 A;  2W5W A;  3BDH A;  4ZG7 A;  3NVL A;  2IUC A;  1EW2 A;  1KHL A;  2GSN A;  1KHK A;  1N2K A;  2RH6 A;  4CXK A;  5IJS A;  1ALJ A;  1ELX A;  4CXS A;  4GTX A;  3MK2 A;  1HQA A;  4LR7 A;  1ED8 A;  4UPI A;  4KAV A;  5EGE A;  4MHX A;  1E2S P;  3UN5 A;  4MY4 A;  5GOV A;  5L0E A;  2W5T A;  3TG0 A;  4LRF A;  3WAX A;  2GSU A;  1KH9 A;  1KHJ A;  4UOO A;  4YR1 A;  5GRR A;  5KXA A;  1ELZ A;  2ZKT A;  3T01 A;  4CXU A;  1HJK A;  3BDF A;  1AJB A;  1ALK A;  4UPL A;  3WBH A;  2D1G A;  4GTW A;  3DPC A;  3WAV A;  1EW9 A;  4LRD A;  1SHN A;  3MK1 A;  4KJG A;  3ED4 A;  3UN3 A;  4FDJ A;  1EQJ A;  1ZED A;  1ANI A;  5HRT A;  5L0B A;  1O99 A;  2W5X A;  3SZZ A;  5EGH A;  1O98 A;  1E3C P;  1EW8 A;  3M8Y A;  4LR2 A;  4UOP A;  3UN2 A;  5C66 A;  5LRN A;  1FSU A;  4B56 A;  4ZGA A;  3M8W A;  3UO0 A;  3BDG A;  1AUK A;  2W5V A;  2VQR A;  2GSO A;  1P49 A;  1KH5 A;  3WAW A;  1AJA A;  1K7H A;  1KH7 A;  4NWJ A;  1KHN A;  1URA A;  5K4P A;  4QAX A;  3NKQ A;  2W8S A;  2GLQ A;  3IGZ B;  1ZEB A;  2IUC B;  1ELY A;  4UPK A;  4NWX A;  1Y6V A;  5DLW A;  3DYC A;  3SZY A;  3TWZ A;  1KH4 A;  5DLV A;  2QZU A;  2ANH A;  4LRC A;  4GTY A;  3NKN A;  3CMR A;  4ZG9 A;  2GA3 A;  3NKR A;  1ED9 A;  1ALH A;  2W8D A;  3IGY B;  4TN0 A;  5IJQ A;  3T00 A;  1SHQ A;  3OT9 A;  3A52 A;  2X98 A;  5LRM A;  4LRB A;  5LIA A;  4MIV A;  2G9Y A;  1AJD A;  4LRA A;  1ANJ A;  1B8J A;  4UPH A;  3LXQ A;  3WAY A;  4GTZ A;  4ZG6 A;  4FDI A; 
#chains in the Genus database with same CATH topology
 4KAY A;  3Q3Q A;  4CYS A;  1ALI A;  2W5S A;  3M8Z A;  1AJC A;  5INH A;  3E2D A;  1HDH A;  3MK0 A;  1N2L A;  4KM4 A;  4LR8 A;  3TX0 A;  1EI6 A;  2XR9 A;  3UNY A;  2XRG A;  5TJ3 A;  3IDD A;  1E33 P;  4LQY A;  5DLT A;  3BDG B;  5L0K A;  3NKM A;  1Y7A A;  2IFY A;  3NKP A;  4UOR A;  2W5Q A;  3NKO A;  4LR9 A;  4CYR A;  5AJ9 A;  1E1Z P;  4KJD A;  3B5Q A;  3KD8 A;  5LQQ A;  4LRE A;  1EJJ A;  1URB A;  3M7V A;  4N7T A;  1ZEF A;  2W5R A;  3T02 A;  2W5W A;  3BDH A;  4ZG7 A;  3NVL A;  2IUC A;  1EW2 A;  1KHL A;  2GSN A;  1KHK A;  1N2K A;  2RH6 A;  4CXK A;  5IJS A;  1ALJ A;  1ELX A;  4CXS A;  4GTX A;  3MK2 A;  1HQA A;  4LR7 A;  1ED8 A;  4UPI A;  4KAV A;  5EGE A;  4MHX A;  1E2S P;  3UN5 A;  4MY4 A;  5GOV A;  5L0E A;  2W5T A;  3TG0 A;  4LRF A;  3WAX A;  2GSU A;  1KH9 A;  1KHJ A;  4UOO A;  4YR1 A;  5GRR A;  5KXA A;  1ELZ A;  2ZKT A;  3T01 A;  4CXU A;  1HJK A;  3BDF A;  1AJB A;  1ALK A;  4UPL A;  3WBH A;  2D1G A;  4GTW A;  3DPC A;  3WAV A;  1EW9 A;  4LRD A;  1SHN A;  3MK1 A;  4KJG A;  3ED4 A;  3UN3 A;  4FDJ A;  1EQJ A;  1ZED A;  1ANI A;  5HRT A;  5L0B A;  1O99 A;  2W5X A;  3SZZ A;  5EGH A;  1O98 A;  1E3C P;  1EW8 A;  3M8Y A;  4LR2 A;  4UOP A;  3UN2 A;  5C66 A;  5LRN A;  1FSU A;  4B56 A;  4ZGA A;  3M8W A;  3UO0 A;  3BDG A;  1AUK A;  2W5V A;  2VQR A;  2GSO A;  1P49 A;  1KH5 A;  3WAW A;  1AJA A;  1K7H A;  1KH7 A;  4NWJ A;  1KHN A;  1URA A;  5K4P A;  4QAX A;  3NKQ A;  2W8S A;  2GLQ A;  3IGZ B;  1ZEB A;  2IUC B;  1ELY A;  4UPK A;  4NWX A;  1Y6V A;  5DLW A;  3DYC A;  3SZY A;  3TWZ A;  1KH4 A;  5DLV A;  2QZU A;  2ANH A;  4LRC A;  4GTY A;  3NKN A;  3CMR A;  4ZG9 A;  2GA3 A;  3NKR A;  1ED9 A;  1ALH A;  2W8D A;  3IGY B;  4TN0 A;  5IJQ A;  3T00 A;  1SHQ A;  3OT9 A;  3A52 A;  2X98 A;  5LRM A;  4LRB A;  5LIA A;  4MIV A;  2G9Y A;  1AJD A;  4LRA A;  1ANJ A;  1B8J A;  4UPH A;  3LXQ A;  3WAY A;  4GTZ A;  4ZG6 A;  4FDI A; 
#chains in the Genus database with same CATH homology
 4KAY A;  3Q3Q A;  4CYS A;  1ALI A;  2W5S A;  3M8Z A;  1AJC A;  5INH A;  3E2D A;  1HDH A;  3MK0 A;  1N2L A;  4KM4 A;  4LR8 A;  3TX0 A;  1EI6 A;  2XR9 A;  3UNY A;  2XRG A;  5TJ3 A;  3IDD A;  1E33 P;  4LQY A;  5DLT A;  3BDG B;  5L0K A;  3NKM A;  1Y7A A;  2IFY A;  3NKP A;  4UOR A;  2W5Q A;  3NKO A;  4LR9 A;  4CYR A;  5AJ9 A;  1E1Z P;  4KJD A;  3B5Q A;  3KD8 A;  5LQQ A;  4LRE A;  1EJJ A;  1URB A;  3M7V A;  4N7T A;  1ZEF A;  2W5R A;  3T02 A;  2W5W A;  3BDH A;  4ZG7 A;  3NVL A;  2IUC A;  1EW2 A;  1KHL A;  2GSN A;  1KHK A;  1N2K A;  2RH6 A;  4CXK A;  5IJS A;  1ALJ A;  1ELX A;  4CXS A;  4GTX A;  3MK2 A;  1HQA A;  4LR7 A;  1ED8 A;  4UPI A;  4KAV A;  5EGE A;  4MHX A;  1E2S P;  3UN5 A;  4MY4 A;  5GOV A;  5L0E A;  2W5T A;  3TG0 A;  4LRF A;  3WAX A;  2GSU A;  1KH9 A;  1KHJ A;  4UOO A;  4YR1 A;  5GRR A;  5KXA A;  1ELZ A;  2ZKT A;  3T01 A;  4CXU A;  1HJK A;  3BDF A;  1AJB A;  1ALK A;  4UPL A;  3WBH A;  2D1G A;  4GTW A;  3DPC A;  3WAV A;  1EW9 A;  4LRD A;  1SHN A;  3MK1 A;  4KJG A;  3ED4 A;  3UN3 A;  4FDJ A;  1EQJ A;  1ZED A;  1ANI A;  5HRT A;  5L0B A;  1O99 A;  2W5X A;  3SZZ A;  5EGH A;  1O98 A;  1E3C P;  1EW8 A;  3M8Y A;  4LR2 A;  4UOP A;  3UN2 A;  5C66 A;  5LRN A;  1FSU A;  4B56 A;  4ZGA A;  3M8W A;  3UO0 A;  3BDG A;  1AUK A;  2W5V A;  2VQR A;  2GSO A;  1P49 A;  1KH5 A;  3WAW A;  1AJA A;  1K7H A;  1KH7 A;  4NWJ A;  1KHN A;  1URA A;  5K4P A;  4QAX A;  3NKQ A;  2W8S A;  2GLQ A;  3IGZ B;  1ZEB A;  2IUC B;  1ELY A;  4UPK A;  4NWX A;  1Y6V A;  5DLW A;  3DYC A;  3SZY A;  3TWZ A;  1KH4 A;  5DLV A;  2QZU A;  2ANH A;  4LRC A;  4GTY A;  3NKN A;  3CMR A;  4ZG9 A;  2GA3 A;  3NKR A;  1ED9 A;  1ALH A;  2W8D A;  3IGY B;  4TN0 A;  5IJQ A;  3T00 A;  1SHQ A;  3OT9 A;  3A52 A;  2X98 A;  5LRM A;  4LRB A;  5LIA A;  4MIV A;  2G9Y A;  1AJD A;  4LRA A;  1ANJ A;  1B8J A;  4UPH A;  3LXQ A;  3WAY A;  4GTZ A;  4ZG6 A;  4FDI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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