The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
144
|
sequence length |
440
|
structure length |
440
|
Chain Sequence |
NWTPDAIRALVDQDNGKLDARIYADQDLYQLELERVFGRSWLMLGHETHIPKIGDYLTTYMGEDPVIMVRQKDQSIKVFLNQCRHRGMRIVRSDGGNAKAFTCTYHGWAYDIAGNLVNVPFEKEAFCDKKEGDCGFDKADWGPLQARVETYKGLVFANWDPEAPDLKTYLSDAMPYMDVMLDRTEAGTEAIGGIQKWVIPCNWKFAAEQFCSDMYHAGTMSHLSGVLAGLPPEMDLTQIQLSKNGNQFRSAWGGHGAGWFINDSSILLSVVGPKITQYWTQGPAAEKAARRVPQLPILDMFGQHMTVFPTCSFLPGINTIRTWHPRGPNEVEVWAFVLVDADAPEDIKEEFRLQNIRTFNAGGVFEQDDGENWVEIQRVMRGHKAKSTSLCAKMGLNVPNKNNPAYPGKTAYVYAEEAARGMYHHWSRMMSEPSWDTLKP
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Oxidoreductase
|
| molecule keywords |
Biphenyl dioxygenase subunit alpha
|
| publication title |
Structural Characterization of Pandoraea pnomenusa B-356 Biphenyl Dioxygenase Reveals Features of Potent Polychlorinated Biphenyl-Degrading Enzymes
pubmed doi rcsb |
| source organism |
Comamonas testosteroni
|
| total genus |
144
|
| structure length |
440
|
| sequence length |
440
|
| ec nomenclature |
ec
1.14.12.18: Biphenyl 2,3-dioxygenase. |
| pdb deposition date | 2009-04-08 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00355 | Rieske | Rieske [2Fe-2S] domain |
| A | PF00848 | Ring_hydroxyl_A | Ring hydroxylating alpha subunit (catalytic domain) |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | 3-layer Sandwich | Rieske Iron-sulfur Protein | Rieske [2Fe-2S] iron-sulphur domain | ||
| Alpha Beta | Alpha-Beta Complex | Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 | Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 |
#chains in the Genus database with same CATH superfamily 4NBD D; 2YVJ B; 1Q90 C; 5CXM A; 2YFI A; 4HM5 A; 4NBD A; 3TGU E; 1BCC E; 2QJP C; 1NDO A; 4NBB A; 2BMO A; 1BE3 E; 1FQT A; 3VMG D; 1NU1 E; 2DE7 D; 4QCK A; 1G8K B; 2YFJ A; 4H0L D; 2DE6 D; 2QJK C; 2HMM A; 4NB8 D; 3DQY A; 2CKF A; 2NVF A; 5AEW A; 2YFL A; 4NB8 A; 3GCF A; 3GKQ A; 1O7N A; 3L75 E; 2XSO A; 2E4Q A; 4NBF D; 4NBC D; 3AZC A; 4NBF A; 2HML A; 2HMJ A; 1G8J B; 4HM2 A; 3N0Q A; 1RIE A; 4PD4 E; 1NTK E; 4NBC A; 4NBE A; 1PPJ E; 3GB4 A; 3L71 E; 3FOU A; 2E75 D; 1NTZ E; 5KLI C; 2GBW A; 4HKV A; 2FYN C; 2B1X A; 1SJG A; 4NBA D; 2ZT9 D; 1PP9 E; 1JM1 A; 2HMK A; 1SQV E; 4QUP A; 3VMI D; 4HM8 A; 4NBG D; 3VMG A; 4NBH D; 3H1L E; 2DE7 A; 1O7H A; 4NBG A; 1EZV E; 1RFS A; 3L70 E; 4NBH A; 2DE6 A; 3CX5 E; 1P84 E; 1KB9 E; 1ULI A; 2GBX A; 1L0N E; 3CXH E; 3CWB E; 5AEU A; 3D89 A; 3H1H E; 4H44 D; 4NB9 D; 3GZX A; 1O7M A; 2YIU C; 3GTE A; 1UUV A; 4HM6 A; 1UUW A; 1Z02 A; 4PV1 D; 4HM0 A; 5KLV E; 1O7P A; 2A06 E; 2XSH A; 2JZA A; 1VM9 A; 4QDD A; 1Z01 A; 2ZYL A; 2B24 A; 3VMH D; 1KYO E; 4NBA A; 2XRX A; 2HMN A; 3GOB A; 1SQP E; 1VCK A; 4HJL A; 4QDF A; 2NUM A; 4AIV A; 1NTM E; 2BMQ A; 3VMI A; 2QPZ A; 2E76 D; 1ULJ A; 2BMR A; 3EN1 A; 3GL0 A; 2NVE A; 2BCC E; 2DE5 D; 4HM4 A; 1SQB E; 3GZY A; 2NWF A; 3VCP A; 4QDC A; 1Z03 A; 2QJY C; 3GCE A; 4P1C H; 3GKE A; 3GTS A; 3L73 E; 4HM3 A; 4NB9 A; 4H13 D; 4HM7 A; 4NBB D; 3H1J E; 5KKZ C; 2E74 D; 4QDF B; 4P1B H; 4HM1 A; 2E4P A; 3H1I E; 4QUR A; 1O7W A; 3BCC E; 3L72 E; 2I7F A; 3L74 E; 5BOK A; 1NYK A; 1WQL A; 2Q3W A; 2JO6 A; 1WW9 A; 4OGQ D; 3VMH A; 1EG9 A; 1SQX E; 1VF5 D; 2XR8 A; 4EMJ B; 5HL4 A; 1L0L E; 1ZRT E; 1O7G A; 2HMO A; 3C0D A; 3EQQ A; 2FYU E; 1SQQ E; 2NUK A; 2NVG A; 4QUQ A; 2IBZ E; 4AAY B; 4NBE D; 3H1K E; 3GL2 A; 4U3F E; 3VCA A; 2D2C D; 2DE5 A; #chains in the Genus database with same CATH topology 4NBD D; 2YVJ B; 1Q90 C; 5CXM A; 2YFI A; 4HM5 A; 4NBD A; 3TGU E; 1BCC E; 2QJP C; 1NDO A; 4NBB A; 2BMO A; 1BE3 E; 1FQT A; 3VMG D; 1NU1 E; 2DE7 D; 4QCK A; 1G8K B; 2YFJ A; 4H0L D; 2DE6 D; 2QJK C; 2HMM A; 4NB8 D; 3DQY A; 2CKF A; 2NVF A; 5AEW A; 2YFL A; 4NB8 A; 3GCF A; 3GKQ A; 1O7N A; 3L75 E; 2XSO A; 2E4Q A; 4NBF D; 4NBC D; 3AZC A; 4NBF A; 2HML A; 2HMJ A; 1G8J B; 4HM2 A; 3N0Q A; 1RIE A; 4PD4 E; 1NTK E; 4NBC A; 4NBE A; 1PPJ E; 3GB4 A; 3L71 E; 3FOU A; 2E75 D; 1NTZ E; 5KLI C; 2GBW A; 4HKV A; 2FYN C; 2B1X A; 1SJG A; 4NBA D; 2ZT9 D; 1PP9 E; 1JM1 A; 2HMK A; 1SQV E; 4QUP A; 3VMI D; 4HM8 A; 4NBG D; 3VMG A; 4NBH D; 3H1L E; 2DE7 A; 1O7H A; 4NBG A; 1EZV E; 1RFS A; 3L70 E; 4NBH A; 2DE6 A; 3CX5 E; 1P84 E; 1KB9 E; 1ULI A; 2GBX A; 1L0N E; 3CXH E; 3CWB E; 5AEU A; 3D89 A; 3H1H E; 4H44 D; 4NB9 D; 3GZX A; 1O7M A; 2YIU C; 3GTE A; 1UUV A; 4HM6 A; 1UUW A; 1Z02 A; 4PV1 D; 4HM0 A; 5KLV E; 1O7P A; 2A06 E; 2XSH A; 2JZA A; 1VM9 A; 4QDD A; 1Z01 A; 2ZYL A; 2B24 A; 3VMH D; 1KYO E; 4NBA A; 2XRX A; 2HMN A; 3GOB A; 1SQP E; 1VCK A; 4HJL A; 4QDF A; 2NUM A; 4AIV A; 1NTM E; 2BMQ A; 3VMI A; 2QPZ A; 2E76 D; 1ULJ A; 2BMR A; 3EN1 A; 3GL0 A; 2NVE A; 2BCC E; 2DE5 D; 4HM4 A; 1SQB E; 3GZY A; 2NWF A; 3VCP A; 4QDC A; 1Z03 A; 2QJY C; 3GCE A; 4P1C H; 3GKE A; 3GTS A; 3L73 E; 4HM3 A; 4NB9 A; 4H13 D; 4HM7 A; 4NBB D; 3H1J E; 5KKZ C; 2E74 D; 4QDF B; 4P1B H; 4HM1 A; 2E4P A; 3H1I E; 4QUR A; 1O7W A; 3BCC E; 3L72 E; 2I7F A; 3L74 E; 5BOK A; 1NYK A; 1WQL A; 2Q3W A; 2JO6 A; 1WW9 A; 4OGQ D; 3VMH A; 1EG9 A; 1SQX E; 1VF5 D; 2XR8 A; 4EMJ B; 5HL4 A; 1L0L E; 1ZRT E; 1O7G A; 2HMO A; 3C0D A; 3EQQ A; 2FYU E; 1SQQ E; 2NUK A; 2NVG A; 4QUQ A; 2IBZ E; 4AAY B; 4NBE D; 3H1K E; 3GL2 A; 4U3F E; 3VCA A; 2D2C D; 2DE5 A; #chains in the Genus database with same CATH homology 4NBD D; 2YVJ B; 1Q90 C; 5CXM A; 2YFI A; 4HM5 A; 4NBD A; 3TGU E; 1BCC E; 2QJP C; 1NDO A; 4NBB A; 2BMO A; 1BE3 E; 1FQT A; 3VMG D; 1NU1 E; 2DE7 D; 4QCK A; 1G8K B; 2YFJ A; 4H0L D; 2DE6 D; 2QJK C; 2HMM A; 4NB8 D; 3DQY A; 2CKF A; 2NVF A; 5AEW A; 2YFL A; 4NB8 A; 3GCF A; 3GKQ A; 1O7N A; 3L75 E; 2XSO A; 2E4Q A; 4NBF D; 4NBC D; 3AZC A; 4NBF A; 2HML A; 2HMJ A; 1G8J B; 4HM2 A; 3N0Q A; 1RIE A; 4PD4 E; 1NTK E; 4NBC A; 4NBE A; 1PPJ E; 3GB4 A; 3L71 E; 3FOU A; 2E75 D; 1NTZ E; 5KLI C; 2GBW A; 4HKV A; 2FYN C; 2B1X A; 1SJG A; 4NBA D; 2ZT9 D; 1PP9 E; 1JM1 A; 2HMK A; 1SQV E; 4QUP A; 3VMI D; 4HM8 A; 4NBG D; 3VMG A; 4NBH D; 3H1L E; 2DE7 A; 1O7H A; 4NBG A; 1EZV E; 1RFS A; 3L70 E; 4NBH A; 2DE6 A; 3CX5 E; 1P84 E; 1KB9 E; 1ULI A; 2GBX A; 1L0N E; 3CXH E; 3CWB E; 5AEU A; 3D89 A; 3H1H E; 4H44 D; 4NB9 D; 3GZX A; 1O7M A; 2YIU C; 3GTE A; 1UUV A; 4HM6 A; 1UUW A; 1Z02 A; 4PV1 D; 4HM0 A; 5KLV E; 1O7P A; 2A06 E; 2XSH A; 2JZA A; 1VM9 A; 4QDD A; 1Z01 A; 2ZYL A; 2B24 A; 3VMH D; 1KYO E; 4NBA A; 2XRX A; 2HMN A; 3GOB A; 1SQP E; 1VCK A; 4HJL A; 4QDF A; 2NUM A; 4AIV A; 1NTM E; 2BMQ A; 3VMI A; 2QPZ A; 2E76 D; 1ULJ A; 2BMR A; 3EN1 A; 3GL0 A; 2NVE A; 2BCC E; 2DE5 D; 4HM4 A; 1SQB E; 3GZY A; 2NWF A; 3VCP A; 4QDC A; 1Z03 A; 2QJY C; 3GCE A; 4P1C H; 3GKE A; 3GTS A; 3L73 E; 4HM3 A; 4NB9 A; 4H13 D; 4HM7 A; 4NBB D; 3H1J E; 5KKZ C; 2E74 D; 4QDF B; 4P1B H; 4HM1 A; 2E4P A; 3H1I E; 4QUR A; 1O7W A; 3BCC E; 3L72 E; 2I7F A; 3L74 E; 5BOK A; 1NYK A; 1WQL A; 2Q3W A; 2JO6 A; 1WW9 A; 4OGQ D; 3VMH A; 1EG9 A; 1SQX E; 1VF5 D; 2XR8 A; 4EMJ B; 5HL4 A; 1L0L E; 1ZRT E; 1O7G A; 2HMO A; 3C0D A; 3EQQ A; 2FYU E; 1SQQ E; 2NUK A; 2NVG A; 4QUQ A; 2IBZ E; 4AAY B; 4NBE D; 3H1K E; 3GL2 A; 4U3F E; 3VCA A; 2D2C D; 2DE5 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
