3IC6A

Crystal structure of putative methylase family protein from neisseria gonorrhoeae
Total Genus 55
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
55
Knots found
sequence length
217
structure length
213
Chain Sequence
LKPALPDYLGNIRIILTRTSHPANIGSAARAMKTMGLHRLTIVTPNLMATPMTENPPVFNPDDVQSFALPEESFILASGAADVLHNAEIVATLDEALADTTIACALTSRRRTAPLQTPRDLVPELLQAANRGEKVALVFGNETFGLSIEEVRACNRLMTINGNPDYFSLNLAQAVQVVCYEIFSQTDSPMTHLQQHAATHEQIKGMLAHMESV
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Structural genomics, unknown function
molecule keywords Putative methylase family protein
publication title Crystal structure of putative methylase family protein from Neisseria gonorrhoeae
rcsb
source organism Neisseria gonorrhoeae fa 1090
total genus 55
structure length 213
sequence length 217
other databases KnotProt 2.0: K +31
ec nomenclature
pdb deposition date 2009-07-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00588 SpoU_methylase SpoU rRNA Methylase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 3ic6A01
4CNGA 4YQNA 1NS5A 4YQRA 2V3JA 4YQ1A 4YVHA 4YQ6A 4FAKA 3BBHA 1VH0A 5FAIA 4E8BA 2V3KA 5D9FA 4XBOA 4MCBA 4YQIA 4YQTA 5CO4A 4L69A 4JAKA 2QWVA 2QMMA 4X3LA 3E5YA 3KNUA 4YQKA 4YPWA 3NK7A 4KDZA 1TO0A 4YVJA 3AIAA 2HA8A 4YQ9A 4YVGA 1P9PA 2Z0YA 4CNDA 5GMCA 3DCMX 2YY8A 1MXIA 4KGNA 3BBEA 5GMBA 4H3YA 3OIIA 4JALA 3KTYA 3KW2A 2EGWA 4YQLA 1ZJRA 3OIJA 1K3RA 4YQQA 3N4KA 4MCDA 1O6DA 4YQSA 3OINA 3AXZA 4MCCA 1UALA 4PZKA 1VHKA 4IG6A 1UAJA 4YPZA 5GM8A 4YQ8A 4YQOA 2O3AA 3IC6A 2I6DA 3N4JA 4YQPA 4CNEA 4YQJA 3IEFA 1UAKA 4YQCA 3O7BA 3AI9X 4X3MA 4YQGA 1Z85A 3ILKA 4YVIA 2CX8A 4YQ3A 3QUVA 3KY7A 1IPAA 4YQAA 1V6ZA 1OY5A 1UAMA 4RG1A 4J3CA 4YPXA 1X7OA 4H3ZA 4YVKA 4YQ5A 3GYQA 3L8UA 4YPYA 4YQ0A 1NXZA 1X7PA 3ONPA 4YQ7A 1GZ0A 3NK6A 1VHYA 4YQDA 2EGVA 4YQBA 4YQ4A 4YQ2A 1J85A 1V2XA 3BBDA 4CNFA
chains in the Genus database with same CATH superfamily
4CNGA 4YQNA 1NS5A 4YQRA 2V3JA 4YQ1A 4YVHA 4YQ6A 4JWGA 4FAKA 3BBHA 1VH0A 5FAIA 4E8BA 2V3KA 5D9FA 4XBOA 4MCBA 4YQIA 4YQTA 5CO4A 4L69A 4JAKA 2QWVA 2QMMA 4X3LA 3E5YA 3KNUA 4YQKA 4YPWA 3NK7A 4KDZA 1TO0A 4YVJA 3AIAA 2HA8A 4YQ9A 4YVGA 1P9PA 2Z0YA 4CNDA 4FMWA 5GMCA 3DCMX 2YY8A 1MXIA 4KGNA 3BBEA 5GMBA 4H3YA 3OIIA 4JALA 3KTYA 3KW2A 2EGWA 4YQLA 1ZJRA 3OIJA 1K3RA 4YQQA 3N4KA 4MCDA 1O6DA 4YQSA 3OINA 3AXZA 4MCCA 1UALA 4PZKA 1VHKA 4JWHA 4IG6A 1UAJA 4YPZA 5GM8A 4YQ8A 4YQOA 2O3AA 3IC6A 2I6DA 3N4JA 4YQPA 4CNEA 4YQJA 3IEFA 1UAKA 4YQCA 3O7BA 3AI9X 4X3MA 4YQGA 1Z85A 3ILKA 4YVIA 2CX8A 4YQ3A 3QUVA 4JWJA 3KY7A 1IPAA 4YQAA 1V6ZA 1OY5A 1UAMA 4RG1A 4J3CA 4YPXA 1X7OA 4H3ZA 4YVKA 4YQ5A 3GYQA 3L8UA 4YPYA 4YQ0A 1NXZA 1X7PA 3ONPA 4YQ7A 1GZ0A 3NK6A 4JWFA 1VHYA 4YQDA 2EGVA 4YQBA 4YQ4A 4YQ2A 1J85A 1V2XA 3BBDA 4CNFA
chains in the Genus database with same CATH topology
4CNGA 4YQNA 1NS5A 4YQRA 2V3JA 4YQ1A 4YVHA 4YQ6A 4JWGA 4FAKA 3BBHA 1VH0A 5FAIA 4E8BA 2V3KA 5D9FA 4XBOA 4MCBA 4YQIA 4YQTA 5CO4A 4L69A 4JAKA 2QWVA 2QMMA 4X3LA 3E5YA 3KNUA 4YQKA 4YPWA 3NK7A 4KDZA 1TO0A 4YVJA 3AIAA 2HA8A 4YQ9A 4YVGA 1P9PA 2Z0YA 4CNDA 4FMWA 5GMCA 3DCMX 2YY8A 1MXIA 4KGNA 3BBEA 5GMBA 4H3YA 3OIIA 4JALA 3KTYA 3KW2A 2EGWA 4YQLA 1ZJRA 3OIJA 1K3RA 4YQQA 3N4KA 4MCDA 1O6DA 4YQSA 3OINA 3AXZA 4MCCA 1UALA 4PZKA 1VHKA 4JWHA 4IG6A 1UAJA 4YPZA 5GM8A 4YQ8A 4YQOA 2O3AA 3IC6A 2I6DA 3N4JA 4YQPA 4CNEA 4YQJA 3IEFA 1UAKA 4YQCA 3O7BA 3AI9X 4X3MA 4YQGA 1Z85A 3ILKA 4YVIA 2CX8A 4YQ3A 3QUVA 4JWJA 3KY7A 1IPAA 4YQAA 1V6ZA 1OY5A 1UAMA 4RG1A 4J3CA 4YPXA 1X7OA 4H3ZA 4YVKA 4YQ5A 3GYQA 3L8UA 4YPYA 4YQ0A 1NXZA 1X7PA 3ONPA 4YQ7A 1GZ0A 3NK6A 4JWFA 1VHYA 4YQDA 2EGVA 4YQBA 4YQ4A 4YQ2A 1J85A 1V2XA 3BBDA 4CNFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4CNG A;  4YQN A;  1NS5 A;  4YQR A;  2V3J A;  4YQ1 A;  4YVH A;  4YQ6 A;  4FAK A;  3BBH A;  1VH0 A;  5FAI A;  4E8B A;  2V3K A;  5D9F A;  4XBO A;  4MCB A;  4YQI A;  4YQT A;  5CO4 A;  4L69 A;  4JAK A;  2QWV A;  2QMM A;  4X3L A;  3E5Y A;  3KNU A;  4YQK A;  4YPW A;  3NK7 A;  4KDZ A;  1TO0 A;  4YVJ A;  3AIA A;  2HA8 A;  4YQ9 A;  4YVG A;  1P9P A;  2Z0Y A;  4CND A;  5GMC A;  3DCM X;  2YY8 A;  1MXI A;  4KGN A;  3BBE A;  5GMB A;  4H3Y A;  3OII A;  4JAL A;  3KTY A;  3KW2 A;  2EGW A;  4YQL A;  1ZJR A;  3OIJ A;  1K3R A;  4YQQ A;  3N4K A;  4MCD A;  1O6D A;  4YQS A;  3OIN A;  3AXZ A;  4MCC A;  1UAL A;  4PZK A;  1VHK A;  4IG6 A;  1UAJ A;  4YPZ A;  5GM8 A;  4YQ8 A;  4YQO A;  2O3A A;  3IC6 A;  2I6D A;  3N4J A;  4YQP A;  4CNE A;  4YQJ A;  3IEF A;  1UAK A;  4YQC A;  3O7B A;  3AI9 X;  4X3M A;  4YQG A;  1Z85 A;  3ILK A;  4YVI A;  2CX8 A;  4YQ3 A;  3QUV A;  3KY7 A;  1IPA A;  4YQA A;  1V6Z A;  1OY5 A;  1UAM A;  4RG1 A;  4J3C A;  4YPX A;  1X7O A;  4H3Z A;  4YVK A;  4YQ5 A;  3GYQ A;  3L8U A;  4YPY A;  4YQ0 A;  1NXZ A;  1X7P A;  3ONP A;  4YQ7 A;  1GZ0 A;  3NK6 A;  1VHY A;  4YQD A;  2EGV A;  4YQB A;  4YQ4 A;  4YQ2 A;  1J85 A;  1V2X A;  3BBD A;  4CNF A; 
#chains in the Genus database with same CATH topology
 4CNG A;  4YQN A;  1NS5 A;  4YQR A;  2V3J A;  4YQ1 A;  4YVH A;  4YQ6 A;  4JWG A;  4FAK A;  3BBH A;  1VH0 A;  5FAI A;  4E8B A;  2V3K A;  5D9F A;  4XBO A;  4MCB A;  4YQI A;  4YQT A;  5CO4 A;  4L69 A;  4JAK A;  2QWV A;  2QMM A;  4X3L A;  3E5Y A;  3KNU A;  4YQK A;  4YPW A;  3NK7 A;  4KDZ A;  1TO0 A;  4YVJ A;  3AIA A;  2HA8 A;  4YQ9 A;  4YVG A;  1P9P A;  2Z0Y A;  4CND A;  4FMW A;  5GMC A;  3DCM X;  2YY8 A;  1MXI A;  4KGN A;  3BBE A;  5GMB A;  4H3Y A;  3OII A;  4JAL A;  3KTY A;  3KW2 A;  2EGW A;  4YQL A;  1ZJR A;  3OIJ A;  1K3R A;  4YQQ A;  3N4K A;  4MCD A;  1O6D A;  4YQS A;  3OIN A;  3AXZ A;  4MCC A;  1UAL A;  4PZK A;  1VHK A;  4JWH A;  4IG6 A;  1UAJ A;  4YPZ A;  5GM8 A;  4YQ8 A;  4YQO A;  2O3A A;  3IC6 A;  2I6D A;  3N4J A;  4YQP A;  4CNE A;  4YQJ A;  3IEF A;  1UAK A;  4YQC A;  3O7B A;  3AI9 X;  4X3M A;  4YQG A;  1Z85 A;  3ILK A;  4YVI A;  2CX8 A;  4YQ3 A;  3QUV A;  4JWJ A;  3KY7 A;  1IPA A;  4YQA A;  1V6Z A;  1OY5 A;  1UAM A;  4RG1 A;  4J3C A;  4YPX A;  1X7O A;  4H3Z A;  4YVK A;  4YQ5 A;  3GYQ A;  3L8U A;  4YPY A;  4YQ0 A;  1NXZ A;  1X7P A;  3ONP A;  4YQ7 A;  1GZ0 A;  3NK6 A;  4JWF A;  1VHY A;  4YQD A;  2EGV A;  4YQB A;  4YQ4 A;  4YQ2 A;  1J85 A;  1V2X A;  3BBD A;  4CNF A; 
#chains in the Genus database with same CATH homology
 4CNG A;  4YQN A;  1NS5 A;  4YQR A;  2V3J A;  4YQ1 A;  4YVH A;  4YQ6 A;  4JWG A;  4FAK A;  3BBH A;  1VH0 A;  5FAI A;  4E8B A;  2V3K A;  5D9F A;  4XBO A;  4MCB A;  4YQI A;  4YQT A;  5CO4 A;  4L69 A;  4JAK A;  2QWV A;  2QMM A;  4X3L A;  3E5Y A;  3KNU A;  4YQK A;  4YPW A;  3NK7 A;  4KDZ A;  1TO0 A;  4YVJ A;  3AIA A;  2HA8 A;  4YQ9 A;  4YVG A;  1P9P A;  2Z0Y A;  4CND A;  4FMW A;  5GMC A;  3DCM X;  2YY8 A;  1MXI A;  4KGN A;  3BBE A;  5GMB A;  4H3Y A;  3OII A;  4JAL A;  3KTY A;  3KW2 A;  2EGW A;  4YQL A;  1ZJR A;  3OIJ A;  1K3R A;  4YQQ A;  3N4K A;  4MCD A;  1O6D A;  4YQS A;  3OIN A;  3AXZ A;  4MCC A;  1UAL A;  4PZK A;  1VHK A;  4JWH A;  4IG6 A;  1UAJ A;  4YPZ A;  5GM8 A;  4YQ8 A;  4YQO A;  2O3A A;  3IC6 A;  2I6D A;  3N4J A;  4YQP A;  4CNE A;  4YQJ A;  3IEF A;  1UAK A;  4YQC A;  3O7B A;  3AI9 X;  4X3M A;  4YQG A;  1Z85 A;  3ILK A;  4YVI A;  2CX8 A;  4YQ3 A;  3QUV A;  4JWJ A;  3KY7 A;  1IPA A;  4YQA A;  1V6Z A;  1OY5 A;  1UAM A;  4RG1 A;  4J3C A;  4YPX A;  1X7O A;  4H3Z A;  4YVK A;  4YQ5 A;  3GYQ A;  3L8U A;  4YPY A;  4YQ0 A;  1NXZ A;  1X7P A;  3ONP A;  4YQ7 A;  1GZ0 A;  3NK6 A;  4JWF A;  1VHY A;  4YQD A;  2EGV A;  4YQB A;  4YQ4 A;  4YQ2 A;  1J85 A;  1V2X A;  3BBD A;  4CNF A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...