3IEFA

Crystal structure of trna guanine-n1-methyltransferase from bartonella henselae using mpcs.
Total Genus 63
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
63
Knots found
sequence length
229
structure length
224
Chain Sequence
KFQARVLTLYPEMFPGFLGCSLAGQALKQGIWSLETVQIRDFASVDDTPAGGGAGMVMRADVLAAALDSCPNDSPRLLMSPRGRLLNQAYARSLARSSGVTLVCGRFEGVDERIIEARELEEVSIGDYILSGGETAALVLLDAIVRLLPGVMGNEISAKCESFENGLLEHPQYTRPAVFEGRGIPPVLTSGHHKAIANWRQQQAESLTRQRRPDLYALYNKNRQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase, rna binding protein
molecule keywords tRNA (guanine-N(1)-)-methyltransferase
publication title Crystal structure of tRNA guanine-n1-methyltransferase from Bartonella henselae using MPCS.
rcsb
source organism Bartonella henselae
total genus 63
structure length 224
sequence length 229
chains with identical sequence B
other databases KnotProt 2.0: K +31
ec nomenclature ec 2.1.1.228: tRNA (guanine(37)-N(1))-methyltransferase.
pdb deposition date 2009-07-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01746 tRNA_m1G_MT tRNA (Guanine-1)-methyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1270.20 Mainly Alpha Orthogonal Bundle Trp Operon Repressor; Chain A tRNA(m1g37)methyltransferase, domain 2 3iefA02
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 3iefA01
3NK7A 1UAMA 4YQ4A 4YQAA 1O6DA 3AXZA 5CO4A 5FAIA 4CNFA 3OIIA 2HA8A 1NS5A 1VH0A 1VHKA 1V2XA 4YQRA 5GMBA 4YQ7A 2QMMA 4YQOA 5GM8A 3L8UA 1TO0A 4YQ5A 4YQGA 3IEFA 4YQIA 1K3RA 4CNGA 4J3CA 4MCCA 4YQ8A 3OIJA 4PZKA 4YQQA 1X7PA 2O3AA 4X3LA 2EGWA 4MCBA 3KNUA 4E8BA 1GZ0A 4KDZA 4YQPA 3DCMX 3KTYA 4YQLA 1UAKA 3KW2A 4L69A 3GYQA 1X7OA 4IG6A 4YQ6A 1V6ZA 1UALA 4YPYA 3QUVA 2I6DA 5D9FA 4YQ3A 4YQTA 4CNDA 4YQSA 1OY5A 3NK6A 1VHYA 3O7BA 1UAJA 4YQCA 2Z0YA 3ONPA 4YQNA 4FAKA 4XBOA 4H3YA 2EGVA 3AIAA 4CNEA 3E5YA 3OINA 3N4JA 4YQ0A 4YQ1A 3BBDA 3KY7A 1NXZA 2YY8A 2CX8A 4YVKA 4YQ9A 2QWVA 3BBHA 4X3MA 4YQJA 4YPWA 3N4KA 3ILKA 4H3ZA 4YQ2A 4KGNA 5GMCA 4YQDA 4MCDA 4YPXA 3IC6A 1P9PA 2V3JA 4YVJA 4YQKA 2V3KA 3BBEA 1J85A 4JAKA 4JALA 1ZJRA 4YQBA 1MXIA 4YVGA 4YVHA 4YVIA 4RG1A 1Z85A 4YPZA 1IPAA 3AI9X
chains in the Genus database with same CATH superfamily
4FMWA 3NK7A 1UAMA 4YQ4A 4YQAA 1TRRA 1O6DA 3AXZA 5CO4A 5FAIA 4CNFA 3OIIA 2HA8A 1NS5A 1VH0A 1VHKA 1V2XA 2XDIA 4YQRA 5GMBA 4YQ7A 2QMMA 4YQOA 5GM8A 3L8UA 1TO0A 4YQ5A 4JWGA 3KORA 4YQGA 3WRPA 3IEFA 4YQIA 1K3RA 1RCSA 4CNGA 4J3CA 4MCCA 4YQ8A 3OIJA 4PZKA 1WRSR 4YQQA 1X7PA 2O3AA 4X3LA 2EGWA 4MCBA 3KNUA 4E8BA 1GZ0A 4KDZA 3SSXN 4JWJA 4YQPA 3DCMX 3KTYA 4YQLA 1UAKA 3KW2A 4L69A 3GYQA 1X7OA 1TROA 4IG6A 4YQ6A 1V6ZA 1UALA 4YPYA 3QUVA 2I6DA 3G1CA 5D9FA 4YQ3A 1WRPR 4YQTA 4CNDA 4YQSA 1OY5A 3NK6A 4JWHA 1VHYA 3O7BA 1UAJA 4YQCA 2Z0YA 3ONPA 4YQNA 4FAKA 1WRTR 4XBOA 2OZ9R 4H3YA 2EGVA 3AIAA 4CNEA 3E5YA 3OINA 3N4JA 4YQ0A 4YQ1A 1ZT9A 3BBDA 3KY7A 1NXZA 2YY8A 4YVKA 2CX8A 4YQ9A 2QWVA 3BBHA 4X3MA 4YQJA 1CO0A 4YPWA 3N4KA 1MI7R 3ILKA 4H3ZA 4YQ2A 4KGNA 5GMCA 4YQDA 4MCDA 4YPXA 3IC6A 1P9PA 2V3JA 4YVJA 3FRWA 4YQKA 2V3KA 3BBEA 1JHGA 1J85A 4JAKA 4JALA 1ZJRA 4YQBA 4JWFA 1MXIA 4YVGA 4YVHA 4YVIA 4RG1A 1Z85A 3SSWN 4YPZA 1IPAA 3AI9X
chains in the Genus database with same CATH topology
4FMWA 3NK7A 1UAMA 4YQ4A 4YQAA 1O6DA 3AXZA 5CO4A 5FAIA 4CNFA 3OIIA 2HA8A 1NS5A 1VH0A 1VHKA 1V2XA 4YQRA 5GMBA 4YQ7A 2QMMA 4YQOA 5GM8A 3L8UA 1TO0A 4YQ5A 4JWGA 4YQGA 3IEFA 4YQIA 1K3RA 4CNGA 4J3CA 4MCCA 4YQ8A 3OIJA 4PZKA 4YQQA 1X7PA 2O3AA 4X3LA 2EGWA 4MCBA 3KNUA 4E8BA 1GZ0A 4KDZA 4JWJA 4YQPA 3DCMX 3KTYA 4YQLA 1UAKA 3KW2A 4L69A 3GYQA 1X7OA 4IG6A 4YQ6A 1V6ZA 1UALA 4YPYA 3QUVA 2I6DA 5D9FA 4YQ3A 4YQTA 4CNDA 4YQSA 1OY5A 3NK6A 4JWHA 1VHYA 3O7BA 1UAJA 4YQCA 2Z0YA 3ONPA 4YQNA 4FAKA 4XBOA 4H3YA 2EGVA 3AIAA 4CNEA 3E5YA 3OINA 3N4JA 4YQ0A 4YQ1A 3BBDA 3KY7A 1NXZA 2YY8A 2CX8A 4YVKA 4YQ9A 2QWVA 3BBHA 4X3MA 4YQJA 4YPWA 3N4KA 3ILKA 4H3ZA 4YQ2A 4KGNA 5GMCA 4YQDA 4MCDA 4YPXA 3IC6A 1P9PA 2V3JA 4YVJA 4YQKA 2V3KA 3BBEA 1J85A 4JAKA 4JALA 1ZJRA 4YQBA 4JWFA 1MXIA 4YVGA 4YVHA 4YVIA 4RG1A 1Z85A 4YPZA 1IPAA 3AI9X
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3NK7 A;  1UAM A;  4YQ4 A;  4YQA A;  1O6D A;  3AXZ A;  5CO4 A;  5FAI A;  4CNF A;  3OII A;  2HA8 A;  1NS5 A;  1VH0 A;  1VHK A;  1V2X A;  4YQR A;  5GMB A;  4YQ7 A;  2QMM A;  4YQO A;  5GM8 A;  3L8U A;  1TO0 A;  4YQ5 A;  4YQG A;  3IEF A;  4YQI A;  1K3R A;  4CNG A;  4J3C A;  4MCC A;  4YQ8 A;  3OIJ A;  4PZK A;  4YQQ A;  1X7P A;  2O3A A;  4X3L A;  2EGW A;  4MCB A;  3KNU A;  4E8B A;  1GZ0 A;  4KDZ A;  4YQP A;  3DCM X;  3KTY A;  4YQL A;  1UAK A;  3KW2 A;  4L69 A;  3GYQ A;  1X7O A;  4IG6 A;  4YQ6 A;  1V6Z A;  1UAL A;  4YPY A;  3QUV A;  2I6D A;  5D9F A;  4YQ3 A;  4YQT A;  4CND A;  4YQS A;  1OY5 A;  3NK6 A;  1VHY A;  3O7B A;  1UAJ A;  4YQC A;  2Z0Y A;  3ONP A;  4YQN A;  4FAK A;  4XBO A;  4H3Y A;  2EGV A;  3AIA A;  4CNE A;  3E5Y A;  3OIN A;  3N4J A;  4YQ0 A;  4YQ1 A;  3BBD A;  3KY7 A;  1NXZ A;  2YY8 A;  2CX8 A;  4YVK A;  4YQ9 A;  2QWV A;  3BBH A;  4X3M A;  4YQJ A;  4YPW A;  3N4K A;  3ILK A;  4H3Z A;  4YQ2 A;  4KGN A;  5GMC A;  4YQD A;  4MCD A;  4YPX A;  3IC6 A;  1P9P A;  2V3J A;  4YVJ A;  4YQK A;  2V3K A;  3BBE A;  1J85 A;  4JAK A;  4JAL A;  1ZJR A;  4YQB A;  1MXI A;  4YVG A;  4YVH A;  4YVI A;  4RG1 A;  1Z85 A;  4YPZ A;  1IPA A;  3AI9 X; 
#chains in the Genus database with same CATH topology
 4FMW A;  3NK7 A;  1UAM A;  4YQ4 A;  4YQA A;  1TRR A;  1O6D A;  3AXZ A;  5CO4 A;  5FAI A;  4CNF A;  3OII A;  2HA8 A;  1NS5 A;  1VH0 A;  1VHK A;  1V2X A;  2XDI A;  4YQR A;  5GMB A;  4YQ7 A;  2QMM A;  4YQO A;  5GM8 A;  3L8U A;  1TO0 A;  4YQ5 A;  4JWG A;  3KOR A;  4YQG A;  3WRP A;  3IEF A;  4YQI A;  1K3R A;  1RCS A;  4CNG A;  4J3C A;  4MCC A;  4YQ8 A;  3OIJ A;  4PZK A;  1WRS R;  4YQQ A;  1X7P A;  2O3A A;  4X3L A;  2EGW A;  4MCB A;  3KNU A;  4E8B A;  1GZ0 A;  4KDZ A;  3SSX N;  4JWJ A;  4YQP A;  3DCM X;  3KTY A;  4YQL A;  1UAK A;  3KW2 A;  4L69 A;  3GYQ A;  1X7O A;  1TRO A;  4IG6 A;  4YQ6 A;  1V6Z A;  1UAL A;  4YPY A;  3QUV A;  2I6D A;  3G1C A;  5D9F A;  4YQ3 A;  1WRP R;  4YQT A;  4CND A;  4YQS A;  1OY5 A;  3NK6 A;  4JWH A;  1VHY A;  3O7B A;  1UAJ A;  4YQC A;  2Z0Y A;  3ONP A;  4YQN A;  4FAK A;  1WRT R;  4XBO A;  2OZ9 R;  4H3Y A;  2EGV A;  3AIA A;  4CNE A;  3E5Y A;  3OIN A;  3N4J A;  4YQ0 A;  4YQ1 A;  1ZT9 A;  3BBD A;  3KY7 A;  1NXZ A;  2YY8 A;  4YVK A;  2CX8 A;  4YQ9 A;  2QWV A;  3BBH A;  4X3M A;  4YQJ A;  1CO0 A;  4YPW A;  3N4K A;  1MI7 R;  3ILK A;  4H3Z A;  4YQ2 A;  4KGN A;  5GMC A;  4YQD A;  4MCD A;  4YPX A;  3IC6 A;  1P9P A;  2V3J A;  4YVJ A;  3FRW A;  4YQK A;  2V3K A;  3BBE A;  1JHG A;  1J85 A;  4JAK A;  4JAL A;  1ZJR A;  4YQB A;  4JWF A;  1MXI A;  4YVG A;  4YVH A;  4YVI A;  4RG1 A;  1Z85 A;  3SSW N;  4YPZ A;  1IPA A;  3AI9 X; 
#chains in the Genus database with same CATH homology
 4FMW A;  3NK7 A;  1UAM A;  4YQ4 A;  4YQA A;  1O6D A;  3AXZ A;  5CO4 A;  5FAI A;  4CNF A;  3OII A;  2HA8 A;  1NS5 A;  1VH0 A;  1VHK A;  1V2X A;  4YQR A;  5GMB A;  4YQ7 A;  2QMM A;  4YQO A;  5GM8 A;  3L8U A;  1TO0 A;  4YQ5 A;  4JWG A;  4YQG A;  3IEF A;  4YQI A;  1K3R A;  4CNG A;  4J3C A;  4MCC A;  4YQ8 A;  3OIJ A;  4PZK A;  4YQQ A;  1X7P A;  2O3A A;  4X3L A;  2EGW A;  4MCB A;  3KNU A;  4E8B A;  1GZ0 A;  4KDZ A;  4JWJ A;  4YQP A;  3DCM X;  3KTY A;  4YQL A;  1UAK A;  3KW2 A;  4L69 A;  3GYQ A;  1X7O A;  4IG6 A;  4YQ6 A;  1V6Z A;  1UAL A;  4YPY A;  3QUV A;  2I6D A;  5D9F A;  4YQ3 A;  4YQT A;  4CND A;  4YQS A;  1OY5 A;  3NK6 A;  4JWH A;  1VHY A;  3O7B A;  1UAJ A;  4YQC A;  2Z0Y A;  3ONP A;  4YQN A;  4FAK A;  4XBO A;  4H3Y A;  2EGV A;  3AIA A;  4CNE A;  3E5Y A;  3OIN A;  3N4J A;  4YQ0 A;  4YQ1 A;  3BBD A;  3KY7 A;  1NXZ A;  2YY8 A;  2CX8 A;  4YVK A;  4YQ9 A;  2QWV A;  3BBH A;  4X3M A;  4YQJ A;  4YPW A;  3N4K A;  3ILK A;  4H3Z A;  4YQ2 A;  4KGN A;  5GMC A;  4YQD A;  4MCD A;  4YPX A;  3IC6 A;  1P9P A;  2V3J A;  4YVJ A;  4YQK A;  2V3K A;  3BBE A;  1J85 A;  4JAK A;  4JAL A;  1ZJR A;  4YQB A;  4JWF A;  1MXI A;  4YVG A;  4YVH A;  4YVI A;  4RG1 A;  1Z85 A;  4YPZ A;  1IPA A;  3AI9 X; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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