3N4KA

Putative rna methyltransferase from yersinia pestis in complex with s-adenosyl-l-homocysteine.
Total Genus 52
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
52
Knots found
sequence length
163
structure length
163
Chain Sequence
NAMLNIVLFEPEIPPNTGNIIRLCANTGCQLHLIKPLGFTWDDKRLRRAGLDYHEFADIKHHHDYQAFLDSEKLDSTQPARLFALTTKGTPAHSAVSYQANDYLLFGPETRGLPAYILDALPAQQKIRIPMQADSRSMNLSNAVSVVVYEAWRQLGYPGALLK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords RNA methyltransferase
publication title X-ray crystal structure of putative RNA methyltransferase from Yersinia pestis.
rcsb
source organism Yersinia pestis
molecule tags Transferase
total genus 52
structure length 163
sequence length 163
chains with identical sequence B
other databases KnotProt 2.0: K +31
ec nomenclature ec 2.1.1.207: tRNA (cytidine(34)-2'-O)-methyltransferase.
pdb deposition date 2010-05-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00588 SpoU_methylase SpoU rRNA Methylase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 3n4kA00
1NS5A 4YQIA 4CNEA 2QWVA 4CNFA 3BBEA 3N4KA 3DCMX 1X7OA 4JAKA 5CO4A 1MXIA 3L8UA 4CNDA 2O3AA 2V3JA 1V2XA 4YQCA 4YQ4A 4J3CA 1OY5A 4YQKA 1UAJA 4X3LA 4MCBA 2HA8A 4YQ7A 4YQ0A 3ILKA 2EGWA 4YQ9A 3NK6A 3AIAA 3KTYA 4KDZA 1UAMA 2YY8A 5FAIA 3ONPA 3KW2A 3IEFA 4YQOA 3NK7A 1V6ZA 4FAKA 4YVJA 4YPYA 4MCCA 4IG6A 3GYQA 4YPXA 3OIJA 2Z0YA 4H3YA 3KNUA 4YQTA 4X3MA 2QMMA 4YQDA 1J85A 4YQQA 3IC6A 3N4JA 1K3RA 4YQLA 1Z85A 3AI9X 2EGVA 4YQ3A 1VHKA 4YQ6A 4YQAA 1O6DA 4YQ1A 4E8BA 4H3ZA 3E5YA 4L69A 4YVKA 4YQPA 4YQSA 4YVHA 4YVIA 4KGNA 4YQJA 4PZKA 4JALA 1VHYA 2CX8A 1VH0A 5GMBA 4YQNA 5D9FA 2I6DA 1NXZA 4RG1A 1TO0A 1UALA 2V3KA 3OIIA 3QUVA 4YQBA 3KY7A 4CNGA 1GZ0A 4YQRA 3OINA 5GMCA 4YPWA 4XBOA 4MCDA 4YQ2A 3AXZA 4YQ8A 4YVGA 1X7PA 1IPAA 4YQGA 4YPZA 4YQ5A 1UAKA 1ZJRA 3BBDA 3O7BA 5GM8A 3BBHA 1P9PA
chains in the Genus database with same CATH superfamily
1NS5A 4YQIA 4CNEA 2QWVA 4CNFA 3BBEA 3N4KA 3DCMX 1X7OA 4JAKA 5CO4A 1MXIA 3L8UA 4CNDA 2O3AA 2V3JA 1V2XA 4YQCA 4YQ4A 4J3CA 1OY5A 4YQKA 1UAJA 4X3LA 4MCBA 2HA8A 4YQ7A 4YQ0A 3ILKA 2EGWA 4YQ9A 3NK6A 3AIAA 3KTYA 4KDZA 1UAMA 2YY8A 5FAIA 3ONPA 3KW2A 3IEFA 4YQOA 3NK7A 1V6ZA 4FAKA 4YVJA 4YPYA 4MCCA 4IG6A 3GYQA 4YPXA 3OIJA 2Z0YA 4H3YA 3KNUA 4YQTA 4X3MA 2QMMA 4YQDA 1J85A 4YQQA 3IC6A 3N4JA 4FMWA 4JWGA 1K3RA 4YQLA 1Z85A 3AI9X 2EGVA 4YQ3A 1VHKA 4YQ6A 4YQAA 1O6DA 4YQ1A 4E8BA 4H3ZA 3E5YA 4L69A 4YVKA 4YQPA 4YQSA 4YVHA 4YVIA 4KGNA 4YQJA 4PZKA 4JALA 1VHYA 2CX8A 1VH0A 5GMBA 4YQNA 5D9FA 2I6DA 1NXZA 4RG1A 1TO0A 1UALA 2V3KA 3OIIA 4JWHA 3QUVA 4YQBA 3KY7A 4CNGA 1GZ0A 4YQRA 3OINA 5GMCA 4YPWA 4XBOA 4MCDA 4JWJA 4JWFA 4YQ2A 3AXZA 4YQ8A 4YVGA 1X7PA 1IPAA 4YQGA 4YPZA 4YQ5A 1UAKA 1ZJRA 3BBDA 3O7BA 5GM8A 3BBHA 1P9PA
chains in the Genus database with same CATH topology
1NS5A 4YQIA 4CNEA 2QWVA 4CNFA 3BBEA 3N4KA 3DCMX 1X7OA 4JAKA 5CO4A 1MXIA 3L8UA 4CNDA 2O3AA 2V3JA 1V2XA 4YQCA 4YQ4A 4J3CA 1OY5A 4YQKA 1UAJA 4X3LA 4MCBA 2HA8A 4YQ7A 4YQ0A 3ILKA 2EGWA 4YQ9A 3NK6A 3AIAA 3KTYA 4KDZA 1UAMA 2YY8A 5FAIA 3ONPA 3KW2A 3IEFA 4YQOA 3NK7A 1V6ZA 4FAKA 4YVJA 4YPYA 4MCCA 4IG6A 3GYQA 4YPXA 3OIJA 2Z0YA 4H3YA 3KNUA 4YQTA 4X3MA 2QMMA 4YQDA 1J85A 4YQQA 3IC6A 3N4JA 4FMWA 4JWGA 1K3RA 4YQLA 1Z85A 3AI9X 2EGVA 4YQ3A 1VHKA 4YQ6A 4YQAA 1O6DA 4YQ1A 4E8BA 4H3ZA 3E5YA 4L69A 4YVKA 4YQPA 4YQSA 4YVHA 4YVIA 4KGNA 4YQJA 4PZKA 4JALA 1VHYA 2CX8A 1VH0A 5GMBA 4YQNA 5D9FA 2I6DA 1NXZA 4RG1A 1TO0A 1UALA 2V3KA 3OIIA 4JWHA 3QUVA 4YQBA 3KY7A 4CNGA 1GZ0A 4YQRA 3OINA 5GMCA 4YPWA 4XBOA 4MCDA 4JWJA 4JWFA 4YQ2A 3AXZA 4YQ8A 4YVGA 1X7PA 1IPAA 4YQGA 4YPZA 4YQ5A 1UAKA 1ZJRA 3BBDA 3O7BA 5GM8A 3BBHA 1P9PA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1NS5 A;  4YQI A;  4CNE A;  2QWV A;  4CNF A;  3BBE A;  3N4K A;  3DCM X;  1X7O A;  4JAK A;  5CO4 A;  1MXI A;  3L8U A;  4CND A;  2O3A A;  2V3J A;  1V2X A;  4YQC A;  4YQ4 A;  4J3C A;  1OY5 A;  4YQK A;  1UAJ A;  4X3L A;  4MCB A;  2HA8 A;  4YQ7 A;  4YQ0 A;  3ILK A;  2EGW A;  4YQ9 A;  3NK6 A;  3AIA A;  3KTY A;  4KDZ A;  1UAM A;  2YY8 A;  5FAI A;  3ONP A;  3KW2 A;  3IEF A;  4YQO A;  3NK7 A;  1V6Z A;  4FAK A;  4YVJ A;  4YPY A;  4MCC A;  4IG6 A;  3GYQ A;  4YPX A;  3OIJ A;  2Z0Y A;  4H3Y A;  3KNU A;  4YQT A;  4X3M A;  2QMM A;  4YQD A;  1J85 A;  4YQQ A;  3IC6 A;  3N4J A;  1K3R A;  4YQL A;  1Z85 A;  3AI9 X;  2EGV A;  4YQ3 A;  1VHK A;  4YQ6 A;  4YQA A;  1O6D A;  4YQ1 A;  4E8B A;  4H3Z A;  3E5Y A;  4L69 A;  4YVK A;  4YQP A;  4YQS A;  4YVH A;  4YVI A;  4KGN A;  4YQJ A;  4PZK A;  4JAL A;  1VHY A;  2CX8 A;  1VH0 A;  5GMB A;  4YQN A;  5D9F A;  2I6D A;  1NXZ A;  4RG1 A;  1TO0 A;  1UAL A;  2V3K A;  3OII A;  3QUV A;  4YQB A;  3KY7 A;  4CNG A;  1GZ0 A;  4YQR A;  3OIN A;  5GMC A;  4YPW A;  4XBO A;  4MCD A;  4YQ2 A;  3AXZ A;  4YQ8 A;  4YVG A;  1X7P A;  1IPA A;  4YQG A;  4YPZ A;  4YQ5 A;  1UAK A;  1ZJR A;  3BBD A;  3O7B A;  5GM8 A;  3BBH A;  1P9P A; 
#chains in the Genus database with same CATH topology
 1NS5 A;  4YQI A;  4CNE A;  2QWV A;  4CNF A;  3BBE A;  3N4K A;  3DCM X;  1X7O A;  4JAK A;  5CO4 A;  1MXI A;  3L8U A;  4CND A;  2O3A A;  2V3J A;  1V2X A;  4YQC A;  4YQ4 A;  4J3C A;  1OY5 A;  4YQK A;  1UAJ A;  4X3L A;  4MCB A;  2HA8 A;  4YQ7 A;  4YQ0 A;  3ILK A;  2EGW A;  4YQ9 A;  3NK6 A;  3AIA A;  3KTY A;  4KDZ A;  1UAM A;  2YY8 A;  5FAI A;  3ONP A;  3KW2 A;  3IEF A;  4YQO A;  3NK7 A;  1V6Z A;  4FAK A;  4YVJ A;  4YPY A;  4MCC A;  4IG6 A;  3GYQ A;  4YPX A;  3OIJ A;  2Z0Y A;  4H3Y A;  3KNU A;  4YQT A;  4X3M A;  2QMM A;  4YQD A;  1J85 A;  4YQQ A;  3IC6 A;  3N4J A;  4FMW A;  4JWG A;  1K3R A;  4YQL A;  1Z85 A;  3AI9 X;  2EGV A;  4YQ3 A;  1VHK A;  4YQ6 A;  4YQA A;  1O6D A;  4YQ1 A;  4E8B A;  4H3Z A;  3E5Y A;  4L69 A;  4YVK A;  4YQP A;  4YQS A;  4YVH A;  4YVI A;  4KGN A;  4YQJ A;  4PZK A;  4JAL A;  1VHY A;  2CX8 A;  1VH0 A;  5GMB A;  4YQN A;  5D9F A;  2I6D A;  1NXZ A;  4RG1 A;  1TO0 A;  1UAL A;  2V3K A;  3OII A;  4JWH A;  3QUV A;  4YQB A;  3KY7 A;  4CNG A;  1GZ0 A;  4YQR A;  3OIN A;  5GMC A;  4YPW A;  4XBO A;  4MCD A;  4JWJ A;  4JWF A;  4YQ2 A;  3AXZ A;  4YQ8 A;  4YVG A;  1X7P A;  1IPA A;  4YQG A;  4YPZ A;  4YQ5 A;  1UAK A;  1ZJR A;  3BBD A;  3O7B A;  5GM8 A;  3BBH A;  1P9P A; 
#chains in the Genus database with same CATH homology
 1NS5 A;  4YQI A;  4CNE A;  2QWV A;  4CNF A;  3BBE A;  3N4K A;  3DCM X;  1X7O A;  4JAK A;  5CO4 A;  1MXI A;  3L8U A;  4CND A;  2O3A A;  2V3J A;  1V2X A;  4YQC A;  4YQ4 A;  4J3C A;  1OY5 A;  4YQK A;  1UAJ A;  4X3L A;  4MCB A;  2HA8 A;  4YQ7 A;  4YQ0 A;  3ILK A;  2EGW A;  4YQ9 A;  3NK6 A;  3AIA A;  3KTY A;  4KDZ A;  1UAM A;  2YY8 A;  5FAI A;  3ONP A;  3KW2 A;  3IEF A;  4YQO A;  3NK7 A;  1V6Z A;  4FAK A;  4YVJ A;  4YPY A;  4MCC A;  4IG6 A;  3GYQ A;  4YPX A;  3OIJ A;  2Z0Y A;  4H3Y A;  3KNU A;  4YQT A;  4X3M A;  2QMM A;  4YQD A;  1J85 A;  4YQQ A;  3IC6 A;  3N4J A;  4FMW A;  4JWG A;  1K3R A;  4YQL A;  1Z85 A;  3AI9 X;  2EGV A;  4YQ3 A;  1VHK A;  4YQ6 A;  4YQA A;  1O6D A;  4YQ1 A;  4E8B A;  4H3Z A;  3E5Y A;  4L69 A;  4YVK A;  4YQP A;  4YQS A;  4YVH A;  4YVI A;  4KGN A;  4YQJ A;  4PZK A;  4JAL A;  1VHY A;  2CX8 A;  1VH0 A;  5GMB A;  4YQN A;  5D9F A;  2I6D A;  1NXZ A;  4RG1 A;  1TO0 A;  1UAL A;  2V3K A;  3OII A;  4JWH A;  3QUV A;  4YQB A;  3KY7 A;  4CNG A;  1GZ0 A;  4YQR A;  3OIN A;  5GMC A;  4YPW A;  4XBO A;  4MCD A;  4JWJ A;  4JWF A;  4YQ2 A;  3AXZ A;  4YQ8 A;  4YVG A;  1X7P A;  1IPA A;  4YQG A;  4YPZ A;  4YQ5 A;  1UAK A;  1ZJR A;  3BBD A;  3O7B A;  5GM8 A;  3BBH A;  1P9P A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...