3NVLA

Crystal structure of phosphoglycerate mutase from trypanosoma brucei
Total Genus 199
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
199
Knots found
sequence length
549
structure length
549
Chain Sequence
LTLAAHKTLPRRKLVLVVLDGVGIGPRDEYDAVHVAKTPLMDALFNDPKHFRSICAHGTAVGLPTDADMGNSEVGHNALGAGRVVLQGASLVDDALESGEIFTSEGYRYLHGAFSQPGRTLHLIGLLSDGGVHSRDNQVYQILKHAGANGAKRIRVHALYDGRDVPDKTSFKFTDELEEVLAKLREGGCDARIASGGGRMFVTMDRYEADWSIVERGWRAQVLGEGRAFKSAREALTKFREEDANISDQYYPPFVIAGDDGRPIGTIEDGDAVLCFNFRGDRVIEMSRAFEEEEFDKFNRVRLPKVRYAGMMRYDGDLGIPNNFLVPPPKLTRTSEEYLIGSGCNIFALSETQKFGHVTYFWNGNRSGKLSEERETFCEIPSDRVQFNQKPLMKSKEITDAAVDAIKSGKYDMIRINYPNGDMVGHTGDLKATITSLEAVDQSLQRLKEAVDSVNGVFLITADHGNSDDMVQRDKKGKPVRDAEGNLMPLTSHTLAPVPVFIGGAGLDPRVQMRTDLPRAGLANVTATFINLMGFEAPSDYEPSLIEVA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Isomerase
molecule keywords 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
publication title Crystal structure of phosphoglycerate mutase from Trypanosoma brucei.
pubmed doi rcsb
source organism Trypanosoma brucei
total genus 199
structure length 549
sequence length 549
chains with identical sequence B
other databases KnotProt 2.0: S +31
ec nomenclature ec 5.4.2.1: Transferred entry: 5.4.2.11 and 5.4.2.12.
pdb deposition date 2010-07-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01676 Metalloenzyme Metalloenzyme superfamily
A PF06415 iPGM_N BPG-independent PGAM N-terminus (iPGM_N)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 3nvlA01
3.40.1450.10 Alpha Beta 3-Layer(aba) Sandwich 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain BPG-independent phosphoglycerate mutase, domain B 3nvlA02
1KH5A 4LR9A 1SHQA 4MIVA 5TJ3A 4KAYA 5IJQA 3BDGA 4LR8A 4LRAA 1KHNA 1KHKA 4FDJA 4UPHA 3M8YA 2XRGA 4LQYA 5LRMA 2GSUA 4ZG7A 2D1GA 1E3CP 4CXSA 2W5SA 1ALIA 3MK0A 1EW8A 1ELYA 4GTYA 4ZGAA 1AJBA 5EGHA 5INHA 1ANIA 4UPIA 1EQJA 2W8SA 2IUCB 2GSOA 5DLTA 2W5QA 3UNYA 4GTWA 3TX0A 3MK1A 4GTXA 3E2DA 1B8JA 4UPKA 3M7VA 1FSUA 3WAXA 1ALKA 5AJ9A 4CYSA 2W8DA 2GA3A 3WAWA 1ALJA 2ZKTA 5K4PA 1KH4A 1ZEFA 3UN3A 3T00A 1E33P 4CXKA 4ZG6A 1ED9A 4MY4A 4B56A 1O98A 2W5RA 1HJKA 5GOVA 5HRTA 3IGYB 2IUCA 3NKNA 3NKOA 4FDIA 4KJDA 3NKPA 4LR7A 2W5VA 1ZEDA 5LQQA 3BDHA 3M8WA 4LRCA 1KHJA 3IGZB 1ALHA 5C66A 5LIAA 1SHNA 1ELXA 1AJAA 4KAVA 1O99A 5L0BA 3OT9A 3A52A 2ANHA 4N7TA 1N2KA 3TWZA 1EI6A 1HQAA 5KXAA 4LRFA 4MHXA 4YR1A 3T02A 3DYCA 3T01A 1KH9A 2X98A 4CYRA 5GRRA 4UPLA 2W5WA 1AJDA 4UOOA 1URBA 1N2LA 3SZZA 3CMRA 3IDDA 3M8ZA 1ED8A 5LRNA 3WAYA 3WBHA 2W5TA 3DPCA 1EJJA 3SZYA 3B5QA 4KM4A 3UN2A 1ELZA 1KH7A 5L0EA 4LRDA 4UORA 1EW2A 3Q3QA 1EW9A 4GTZA 5EGEA 1K7HA 1Y6VA 3TG0A 3KD8A 2VQRA 3NVLA 4LR2A 4NWXA 1HDHA 3BDGB 5IJSA 3NKRA 1Y7AA 5DLWA 1URAA 1ZEBA 4NWJA 1AUKA 3LXQA 3NKQA 3UN5A 4ZG9A 4UOPA 1P49A 2IFYA 4LREA 4TN0A 4CXUA 2RH6A 3BDFA 3ED4A 2W5XA 4KJGA 2G9YA 4LRBA 3NKMA 1AJCA 3UO0A 3WAVA 1E2SP 5DLVA 1ANJA 2GSNA 2QZUA 1KHLA 5L0KA 4QAXA 2GLQA 1E1ZP 3MK2A 2XR9A
chains in the Genus database with same CATH superfamily
1KH5A 4LR9A 1SHQA 4MIVA 5TJ3A 4KAYA 5IJQA 3BDGA 4LR8A 4LRAA 1KHNA 1KHKA 4FDJA 4UPHA 3M8YA 2XRGA 4LQYA 5LRMA 2GSUA 4ZG7A 2D1GA 1E3CP 4CXSA 2W5SA 1ALIA 3MK0A 1EW8A 1ELYA 4GTYA 4ZGAA 1AJBA 5EGHA 5INHA 1ANIA 4UPIA 1EQJA 2W8SA 2IUCB 2GSOA 5DLTA 2W5QA 3UNYA 4GTWA 3TX0A 3MK1A 4GTXA 3E2DA 1B8JA 4UPKA 3M7VA 1FSUA 3WAXA 1ALKA 5AJ9A 4CYSA 2W8DA 2GA3A 3WAWA 1ALJA 2ZKTA 5K4PA 1KH4A 1ZEFA 3UN3A 3T00A 1E33P 4CXKA 4ZG6A 1ED9A 4MY4A 4B56A 1O98A 2W5RA 1HJKA 5GOVA 5HRTA 3IGYB 2IUCA 3NKNA 3NKOA 4FDIA 4KJDA 3NKPA 4LR7A 2W5VA 1ZEDA 5LQQA 3BDHA 3M8WA 4LRCA 1KHJA 3IGZB 1ALHA 5C66A 5LIAA 1SHNA 1ELXA 1AJAA 4KAVA 1O99A 5L0BA 3OT9A 3A52A 2ANHA 4N7TA 1N2KA 3TWZA 1EI6A 1HQAA 5KXAA 4LRFA 4MHXA 4YR1A 3T02A 3DYCA 3T01A 1KH9A 2X98A 4CYRA 5GRRA 4UPLA 2W5WA 1AJDA 4UOOA 1URBA 1N2LA 3SZZA 3CMRA 3IDDA 3M8ZA 1ED8A 5LRNA 3WAYA 3WBHA 2W5TA 3DPCA 1EJJA 3SZYA 3B5QA 4KM4A 3UN2A 1ELZA 1KH7A 5L0EA 4LRDA 4UORA 1EW2A 3Q3QA 1EW9A 4GTZA 5EGEA 1K7HA 1Y6VA 3TG0A 3KD8A 2VQRA 3NVLA 4LR2A 4NWXA 1HDHA 3BDGB 5IJSA 3NKRA 1Y7AA 5DLWA 1URAA 1ZEBA 4NWJA 1AUKA 3LXQA 3NKQA 3UN5A 4ZG9A 4UOPA 1P49A 2IFYA 4LREA 4TN0A 4CXUA 2RH6A 3BDFA 3ED4A 2W5XA 4KJGA 2G9YA 4LRBA 3NKMA 1AJCA 3UO0A 3WAVA 1E2SP 5DLVA 1ANJA 2GSNA 2QZUA 1KHLA 5L0KA 4QAXA 2GLQA 1E1ZP 3MK2A 2XR9A
chains in the Genus database with same CATH topology
1KH5A 4LR9A 1SHQA 4MIVA 5TJ3A 4KAYA 5IJQA 3BDGA 4LR8A 4LRAA 1KHNA 1KHKA 4FDJA 4UPHA 3M8YA 2XRGA 4LQYA 5LRMA 2GSUA 4ZG7A 2D1GA 1E3CP 4CXSA 2W5SA 1ALIA 3MK0A 1EW8A 1ELYA 4GTYA 4ZGAA 1AJBA 5EGHA 5INHA 1ANIA 4UPIA 1EQJA 2W8SA 2IUCB 2GSOA 5DLTA 2W5QA 3UNYA 4GTWA 3TX0A 3MK1A 4GTXA 3E2DA 1B8JA 4UPKA 3M7VA 1FSUA 3WAXA 1ALKA 5AJ9A 4CYSA 2W8DA 2GA3A 3WAWA 1ALJA 2ZKTA 5K4PA 1KH4A 1ZEFA 3UN3A 3T00A 1E33P 4CXKA 4ZG6A 1ED9A 4MY4A 4B56A 1O98A 2W5RA 1HJKA 5GOVA 5HRTA 3IGYB 2IUCA 3NKNA 3NKOA 4FDIA 4KJDA 3NKPA 4LR7A 2W5VA 1ZEDA 5LQQA 3BDHA 3M8WA 4LRCA 1KHJA 3IGZB 1ALHA 5C66A 5LIAA 1SHNA 1ELXA 1AJAA 4KAVA 1O99A 5L0BA 3OT9A 3A52A 2ANHA 4N7TA 1N2KA 3TWZA 1EI6A 1HQAA 5KXAA 4LRFA 4MHXA 4YR1A 3T02A 3DYCA 3T01A 1KH9A 2X98A 4CYRA 5GRRA 4UPLA 2W5WA 1AJDA 4UOOA 1URBA 1N2LA 3SZZA 3CMRA 3IDDA 3M8ZA 1ED8A 5LRNA 3WAYA 3WBHA 2W5TA 3DPCA 1EJJA 3SZYA 3B5QA 4KM4A 3UN2A 1ELZA 1KH7A 5L0EA 4LRDA 4UORA 1EW2A 3Q3QA 1EW9A 4GTZA 5EGEA 1K7HA 1Y6VA 3TG0A 3KD8A 2VQRA 3NVLA 4LR2A 4NWXA 1HDHA 3BDGB 5IJSA 3NKRA 1Y7AA 5DLWA 1URAA 1ZEBA 4NWJA 1AUKA 3LXQA 3NKQA 3UN5A 4ZG9A 4UOPA 1P49A 2IFYA 4LREA 4TN0A 4CXUA 2RH6A 3BDFA 3ED4A 2W5XA 4KJGA 2G9YA 4LRBA 3NKMA 1AJCA 3UO0A 3WAVA 1E2SP 5DLVA 1ANJA 2GSNA 2QZUA 1KHLA 5L0KA 4QAXA 2GLQA 1E1ZP 3MK2A 2XR9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1KH5 A;  4LR9 A;  1SHQ A;  4MIV A;  5TJ3 A;  4KAY A;  5IJQ A;  3BDG A;  4LR8 A;  4LRA A;  1KHN A;  1KHK A;  4FDJ A;  4UPH A;  3M8Y A;  2XRG A;  4LQY A;  5LRM A;  2GSU A;  4ZG7 A;  2D1G A;  1E3C P;  4CXS A;  2W5S A;  1ALI A;  3MK0 A;  1EW8 A;  1ELY A;  4GTY A;  4ZGA A;  1AJB A;  5EGH A;  5INH A;  1ANI A;  4UPI A;  1EQJ A;  2W8S A;  2IUC B;  2GSO A;  5DLT A;  2W5Q A;  3UNY A;  4GTW A;  3TX0 A;  3MK1 A;  4GTX A;  3E2D A;  1B8J A;  4UPK A;  3M7V A;  1FSU A;  3WAX A;  1ALK A;  5AJ9 A;  4CYS A;  2W8D A;  2GA3 A;  3WAW A;  1ALJ A;  2ZKT A;  5K4P A;  1KH4 A;  1ZEF A;  3UN3 A;  3T00 A;  1E33 P;  4CXK A;  4ZG6 A;  1ED9 A;  4MY4 A;  4B56 A;  1O98 A;  2W5R A;  1HJK A;  5GOV A;  5HRT A;  3IGY B;  2IUC A;  3NKN A;  3NKO A;  4FDI A;  4KJD A;  3NKP A;  4LR7 A;  2W5V A;  1ZED A;  5LQQ A;  3BDH A;  3M8W A;  4LRC A;  1KHJ A;  3IGZ B;  1ALH A;  5C66 A;  5LIA A;  1SHN A;  1ELX A;  1AJA A;  4KAV A;  1O99 A;  5L0B A;  3OT9 A;  3A52 A;  2ANH A;  4N7T A;  1N2K A;  3TWZ A;  1EI6 A;  1HQA A;  5KXA A;  4LRF A;  4MHX A;  4YR1 A;  3T02 A;  3DYC A;  3T01 A;  1KH9 A;  2X98 A;  4CYR A;  5GRR A;  4UPL A;  2W5W A;  1AJD A;  4UOO A;  1URB A;  1N2L A;  3SZZ A;  3CMR A;  3IDD A;  3M8Z A;  1ED8 A;  5LRN A;  3WAY A;  3WBH A;  2W5T A;  3DPC A;  1EJJ A;  3SZY A;  3B5Q A;  4KM4 A;  3UN2 A;  1ELZ A;  1KH7 A;  5L0E A;  4LRD A;  4UOR A;  1EW2 A;  3Q3Q A;  1EW9 A;  4GTZ A;  5EGE A;  1K7H A;  1Y6V A;  3TG0 A;  3KD8 A;  2VQR A;  3NVL A;  4LR2 A;  4NWX A;  1HDH A;  3BDG B;  5IJS A;  3NKR A;  1Y7A A;  5DLW A;  1URA A;  1ZEB A;  4NWJ A;  1AUK A;  3LXQ A;  3NKQ A;  3UN5 A;  4ZG9 A;  4UOP A;  1P49 A;  2IFY A;  4LRE A;  4TN0 A;  4CXU A;  2RH6 A;  3BDF A;  3ED4 A;  2W5X A;  4KJG A;  2G9Y A;  4LRB A;  3NKM A;  1AJC A;  3UO0 A;  3WAV A;  1E2S P;  5DLV A;  1ANJ A;  2GSN A;  2QZU A;  1KHL A;  5L0K A;  4QAX A;  2GLQ A;  1E1Z P;  3MK2 A;  2XR9 A; 
#chains in the Genus database with same CATH topology
 1KH5 A;  4LR9 A;  1SHQ A;  4MIV A;  5TJ3 A;  4KAY A;  5IJQ A;  3BDG A;  4LR8 A;  4LRA A;  1KHN A;  1KHK A;  4FDJ A;  4UPH A;  3M8Y A;  2XRG A;  4LQY A;  5LRM A;  2GSU A;  4ZG7 A;  2D1G A;  1E3C P;  4CXS A;  2W5S A;  1ALI A;  3MK0 A;  1EW8 A;  1ELY A;  4GTY A;  4ZGA A;  1AJB A;  5EGH A;  5INH A;  1ANI A;  4UPI A;  1EQJ A;  2W8S A;  2IUC B;  2GSO A;  5DLT A;  2W5Q A;  3UNY A;  4GTW A;  3TX0 A;  3MK1 A;  4GTX A;  3E2D A;  1B8J A;  4UPK A;  3M7V A;  1FSU A;  3WAX A;  1ALK A;  5AJ9 A;  4CYS A;  2W8D A;  2GA3 A;  3WAW A;  1ALJ A;  2ZKT A;  5K4P A;  1KH4 A;  1ZEF A;  3UN3 A;  3T00 A;  1E33 P;  4CXK A;  4ZG6 A;  1ED9 A;  4MY4 A;  4B56 A;  1O98 A;  2W5R A;  1HJK A;  5GOV A;  5HRT A;  3IGY B;  2IUC A;  3NKN A;  3NKO A;  4FDI A;  4KJD A;  3NKP A;  4LR7 A;  2W5V A;  1ZED A;  5LQQ A;  3BDH A;  3M8W A;  4LRC A;  1KHJ A;  3IGZ B;  1ALH A;  5C66 A;  5LIA A;  1SHN A;  1ELX A;  1AJA A;  4KAV A;  1O99 A;  5L0B A;  3OT9 A;  3A52 A;  2ANH A;  4N7T A;  1N2K A;  3TWZ A;  1EI6 A;  1HQA A;  5KXA A;  4LRF A;  4MHX A;  4YR1 A;  3T02 A;  3DYC A;  3T01 A;  1KH9 A;  2X98 A;  4CYR A;  5GRR A;  4UPL A;  2W5W A;  1AJD A;  4UOO A;  1URB A;  1N2L A;  3SZZ A;  3CMR A;  3IDD A;  3M8Z A;  1ED8 A;  5LRN A;  3WAY A;  3WBH A;  2W5T A;  3DPC A;  1EJJ A;  3SZY A;  3B5Q A;  4KM4 A;  3UN2 A;  1ELZ A;  1KH7 A;  5L0E A;  4LRD A;  4UOR A;  1EW2 A;  3Q3Q A;  1EW9 A;  4GTZ A;  5EGE A;  1K7H A;  1Y6V A;  3TG0 A;  3KD8 A;  2VQR A;  3NVL A;  4LR2 A;  4NWX A;  1HDH A;  3BDG B;  5IJS A;  3NKR A;  1Y7A A;  5DLW A;  1URA A;  1ZEB A;  4NWJ A;  1AUK A;  3LXQ A;  3NKQ A;  3UN5 A;  4ZG9 A;  4UOP A;  1P49 A;  2IFY A;  4LRE A;  4TN0 A;  4CXU A;  2RH6 A;  3BDF A;  3ED4 A;  2W5X A;  4KJG A;  2G9Y A;  4LRB A;  3NKM A;  1AJC A;  3UO0 A;  3WAV A;  1E2S P;  5DLV A;  1ANJ A;  2GSN A;  2QZU A;  1KHL A;  5L0K A;  4QAX A;  2GLQ A;  1E1Z P;  3MK2 A;  2XR9 A; 
#chains in the Genus database with same CATH homology
 1KH5 A;  4LR9 A;  1SHQ A;  4MIV A;  5TJ3 A;  4KAY A;  5IJQ A;  3BDG A;  4LR8 A;  4LRA A;  1KHN A;  1KHK A;  4FDJ A;  4UPH A;  3M8Y A;  2XRG A;  4LQY A;  5LRM A;  2GSU A;  4ZG7 A;  2D1G A;  1E3C P;  4CXS A;  2W5S A;  1ALI A;  3MK0 A;  1EW8 A;  1ELY A;  4GTY A;  4ZGA A;  1AJB A;  5EGH A;  5INH A;  1ANI A;  4UPI A;  1EQJ A;  2W8S A;  2IUC B;  2GSO A;  5DLT A;  2W5Q A;  3UNY A;  4GTW A;  3TX0 A;  3MK1 A;  4GTX A;  3E2D A;  1B8J A;  4UPK A;  3M7V A;  1FSU A;  3WAX A;  1ALK A;  5AJ9 A;  4CYS A;  2W8D A;  2GA3 A;  3WAW A;  1ALJ A;  2ZKT A;  5K4P A;  1KH4 A;  1ZEF A;  3UN3 A;  3T00 A;  1E33 P;  4CXK A;  4ZG6 A;  1ED9 A;  4MY4 A;  4B56 A;  1O98 A;  2W5R A;  1HJK A;  5GOV A;  5HRT A;  3IGY B;  2IUC A;  3NKN A;  3NKO A;  4FDI A;  4KJD A;  3NKP A;  4LR7 A;  2W5V A;  1ZED A;  5LQQ A;  3BDH A;  3M8W A;  4LRC A;  1KHJ A;  3IGZ B;  1ALH A;  5C66 A;  5LIA A;  1SHN A;  1ELX A;  1AJA A;  4KAV A;  1O99 A;  5L0B A;  3OT9 A;  3A52 A;  2ANH A;  4N7T A;  1N2K A;  3TWZ A;  1EI6 A;  1HQA A;  5KXA A;  4LRF A;  4MHX A;  4YR1 A;  3T02 A;  3DYC A;  3T01 A;  1KH9 A;  2X98 A;  4CYR A;  5GRR A;  4UPL A;  2W5W A;  1AJD A;  4UOO A;  1URB A;  1N2L A;  3SZZ A;  3CMR A;  3IDD A;  3M8Z A;  1ED8 A;  5LRN A;  3WAY A;  3WBH A;  2W5T A;  3DPC A;  1EJJ A;  3SZY A;  3B5Q A;  4KM4 A;  3UN2 A;  1ELZ A;  1KH7 A;  5L0E A;  4LRD A;  4UOR A;  1EW2 A;  3Q3Q A;  1EW9 A;  4GTZ A;  5EGE A;  1K7H A;  1Y6V A;  3TG0 A;  3KD8 A;  2VQR A;  3NVL A;  4LR2 A;  4NWX A;  1HDH A;  3BDG B;  5IJS A;  3NKR A;  1Y7A A;  5DLW A;  1URA A;  1ZEB A;  4NWJ A;  1AUK A;  3LXQ A;  3NKQ A;  3UN5 A;  4ZG9 A;  4UOP A;  1P49 A;  2IFY A;  4LRE A;  4TN0 A;  4CXU A;  2RH6 A;  3BDF A;  3ED4 A;  2W5X A;  4KJG A;  2G9Y A;  4LRB A;  3NKM A;  1AJC A;  3UO0 A;  3WAV A;  1E2S P;  5DLV A;  1ANJ A;  2GSN A;  2QZU A;  1KHL A;  5L0K A;  4QAX A;  2GLQ A;  1E1Z P;  3MK2 A;  2XR9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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