3WJUA

Crystal structure of the l68d variant of mlolb from escherichia coli
Total Genus 36
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
178
structure length
178
Chain Sequence
PGKSPDSPQWRQHQQDVRNLNQYQTRGAFAYISDQQKVYARFFWQQTGQDRYRLLLTNPDGSTELELNAQPGNVQLVDNKGQRYTADDAEEMIGKLTGMPIPLNSLRQWILGLPGDATDYKLDDQYRLSEITYSQNGKNWKVVYGGYDTKTQPAMPANMELTDGGQRIKLKMDNWIVK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transport protein
molecule keywords Outer-membrane lipoprotein LolB
publication title Roles of the Protruding Loop of Factor B Essential for the Localization of Lipoproteins (LolB) in the Anchoring of Bacterial Triacylated Proteins to the Outer Membran
pubmed doi rcsb
source organism Escherichia coli
total genus 36
structure length 178
sequence length 178
ec nomenclature
pdb deposition date 2013-10-16
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.50.20.10 Mainly Beta Clam outer membrane lipoprotein receptor (LolB), chain A Lipoprotein localisation LolA/LolB/LppX 3wjuA00
2ZPCA 1IWMA 3WJUA 2P4BA 4Z48A 2ZPDA 3WJTA 1IWNA 1IWLA 2V43A 2W7QA 3BUUA 2V42A 3BK5A 4KI3A 3M4WA 3KSNA 4MXTA 1UA8A 2YZYA 3WJVA
chains in the Genus database with same CATH superfamily
2BYOA 4EG9A 2ZPCA 1IWMA 4QA8A 3WJUA 2P4BA 3MH9A 4Z48A 2ZPDA 3WJTA 3MHAA 2ZF4A 1IWNA 1IWLA 2V43A 2W7QA 3BUUA 3BMZA 2V42A 3BK5A 4KI3A 4EGDA 3M4WA 3KSNA 3MH8A 4MXTA 1UA8A 2YZYA 4ZRAA 2ZF3A 3WJVA
chains in the Genus database with same CATH topology
2ZPCA 1IWMA 3WJUA 2P4BA 4Z48A 2ZPDA 3WJTA 1IWNA 1IWLA 2V43A 2W7QA 3BUUA 2V42A 3BK5A 4KI3A 3M4WA 3KSNA 4MXTA 1UA8A 2YZYA 3WJVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ZPC A;  1IWM A;  3WJU A;  2P4B A;  4Z48 A;  2ZPD A;  3WJT A;  1IWN A;  1IWL A;  2V43 A;  2W7Q A;  3BUU A;  2V42 A;  3BK5 A;  4KI3 A;  3M4W A;  3KSN A;  4MXT A;  1UA8 A;  2YZY A;  3WJV A; 
#chains in the Genus database with same CATH topology
 2BYO A;  4EG9 A;  2ZPC A;  1IWM A;  4QA8 A;  3WJU A;  2P4B A;  3MH9 A;  4Z48 A;  2ZPD A;  3WJT A;  3MHA A;  2ZF4 A;  1IWN A;  1IWL A;  2V43 A;  2W7Q A;  3BUU A;  3BMZ A;  2V42 A;  3BK5 A;  4KI3 A;  4EGD A;  3M4W A;  3KSN A;  3MH8 A;  4MXT A;  1UA8 A;  2YZY A;  4ZRA A;  2ZF3 A;  3WJV A; 
#chains in the Genus database with same CATH homology
 2ZPC A;  1IWM A;  3WJU A;  2P4B A;  4Z48 A;  2ZPD A;  3WJT A;  1IWN A;  1IWL A;  2V43 A;  2W7Q A;  3BUU A;  2V42 A;  3BK5 A;  4KI3 A;  3M4W A;  3KSN A;  4MXT A;  1UA8 A;  2YZY A;  3WJV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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