4BBRM

Structure of rna polymerase ii-tfiib complex
Total Genus 39
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
39
sequence length
193
structure length
193
Chain Sequence
LTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDHNGDDPSRVGEASNPLLDGNNLSTRIGKGETTDMRFTKELNKAQGKNVMDKKDNEVQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIHVKTKEFGKTLNIMKNIL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription
molecule keywords DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1
publication title Structure and Function of the Initially Transcribing RNA Polymerase II-TFIIB Complex
pubmed doi rcsb
source organism Saccharomyces cerevisiae
total genus 39
structure length 193
sequence length 193
ec nomenclature
pdb deposition date 2012-09-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
M PF00382 TFIIB Transcription factor TFIIB repeat
M PF08271 TF_Zn_Ribbon TFIIB zinc-binding
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.472.170 Mainly Alpha Orthogonal Bundle Cyclin A; domain 1 Cyclin A; domain 1 4bbrM00
4BBRM 4BBSM
chains in the Genus database with same CATH superfamily
4EOPB 2BS3A 4EOJB 2D0QB 3QXEB 3EJ1B 3MY5B 1VINA 3GTMS 1E7PA 3TNHB 3M03A 2IW6B 1O9KA 2WXVB 4YOSA 4CFMB 4BCJB 2ZPEB 4ELJA 1GH6B 4AI6A 1TFBA 2C5NB 5FGKB 4BCPB 3QYBA 2PK2A 1IREB 3BG9A 4BY1X 2ZPIB 1QMZB 5IHYA 4RODA 3KHIA 2QQ8A 2WHBB 2CYZB 5CYIB 5BNJB 3QZ9B 4F7SB 3A8HB 4ZGDB 3G33B 1FKMA 4CFNB 2WPAB 4II5B 4BCND 4BCKB 4UN0A 2WJ9A 4CFWB 3NDQA 2DD4B 3X24B 2ZCFB 3A8MB 3TN8B 2IN3A 4OB3B 3BHUB 2DPPB 1JOWA 2QGSA 3EOCB 2C5VB 1VOLA 3X28B 4BCOB 3BG5A 2JGZB 1OL2B 2I53A 4IMYB 3WVDB 1UNLD 2ZPBB 1ENWA 4BCNB 2QDYB 5HBEB 4LOCA 3X26B 3DTOA 4ZGEB 2X1NB 2BKZB 4HNTA 3QHWB 4EOSB 2W99A 3BHTB 1H1QB 4ROEA 1V29B 2F2CA 4BCMD 2WIPB 1N4MA 2KMGA 4EC8B 2WFYB 3DDQB 3POMA 2IVXA 1OKWB 3QWLA 1OL1B 3VYGB 3H4CA 2BPMB 2ZPFB 3X25B 4BCMB 1FVVB 2CJMB 2G77A 4EOOB 3MI9B 4OB2B 1H1PB 2UZBB 4EONB 2QFZA 4EOLB 4YOOA 4JX6A 1ZP2A 2WIHB 2DXBB 5IDPB 4MIMA 4F7LB 5EJCA 3HZJA 3BLRB 3HBLA 2IW8B 2UZLB 5ICPB 1H1RB 3QYEA 4OR5B 4Y72B 5IF1B 2C6TB 2W9ZA 4ELLA 4JX5A 4CXAB 2CZ1B 1UGRB 4BBRM 4MFEA 1TD6A 2EUFA 3TW6A 1OIYB 3VKHA 2WEVB 4AKIA 1OKVB 3EIDB 1UNHD 3RGFB 1P5EB 3O0GD 4BCIB 4G6LB 4CFVB 4CRLB 3DDPB 3K7AM 3TNWB 5CEIB 1URCB 4BCFB 4ZGJB 1D3UB 4AKHA 4BCHB 1UGSB 4BXXX 4YC3B 3VYHB 1AHJB 4YOZA 3HO8A 2ZZDB 5DQVA 5ACBA 3WVEB 4ROCA 3QYHB 4AKGA 1E9HB 4OGRB 4EC9B 5HQ0B 1GUXB 4FX3B 5IDNB 2DD5B 2I40B 4HL4A 1UNGD 4NSTB 2PJQA 2ZPGB 4Z6YA 2W96A 2DMEA 1W98B 1H1SB 5I5ZB 3HB9A 4EORB 2PK9B 1BU2A 5LMKB 2UZDB 3MIAB 3BLHB 1H27B 3DOGB 4EOMB 2CCHB 1VYWB 1QLBA 2B9RA 4JX4A 4HLQA 5EFQB 4EOKB 2C4GB 2C5XB 2C5OB 2UZEB 3QHRB 4HNUA 3BG3A 3QYGB 2PMIB 5LQFB 2DXCB 4M6VA 2R7GA 2W9FA 4F6UB 1O9KB 3TW7A 3A8OB 3VKGA 3LQ5B 3F5XB 2G9XB 4KRDB 1XO2A 3QZ5B 4BCGB 2QF7A 2LW4A 4F6WB 5L2WB 4NC6A 3BLQB 1UGQB 4BBSM 1OIUB 4EOQB 1JSTB 2IW9B 4CFXB 4QSHA 2QDJA 4KRCB 1UGPB 1H25B 1FINB 3B57A 1PKDB 1GY3B 2BS2A 4HNVA 1AD6A 1F5QB 5HNBB 3BHVB 5DQWA 3A8LB 4BCQD 1JSUB 1H26B 3HHTB 2KR6A 1H4LD 2BS4A 4CFUD 4OB0B 4OB1B 5HBJB 4I3ZB 4F7NB 1OI9B 4MFDA 1AISB 5HBHB 2V22B 4TTHA 4BY7X 2UUEB 1JKWA 1H28B 2AHJB 4BCQB 2WMBB 3DL1A 1GUXA 4CFUB 3MY1B 3TNIB 4F7JB 1OGUB 4EOIB 2WMAB 2ZPHB 1KXUA 3DJBA 3X20B 2CCIB 4FM4B 3A8GB 4F70B 3PO3S 4F6SB 2CZ7B 5HVYB 2PHGA 1G3NC 1H24B 1C9BA 2W2HA 2CZ6B 2CZ0B
chains in the Genus database with same CATH topology
4AKHA 2KMGA 2BS3A 4QSHA 2D0QB 3QXEB 1UGSB 2QDJA 1E7PA 1UGPB 3VYHB 1AHJB 3HO8A 2BS2A 2ZZDB 4HNVA 3WVEB 2ZPEB 3QYHB 4ELJA 4AKGA 4AI6A 3QWLA 3QYBA 3VYGB 1IREB 3A8LB 3BG9A 3H4CA 2ZPIB 2ZPFB 3HHTB 3X25B 2KR6A 2BS4A 2G77A 2DD5B 3KHIA 2QQ8A 4OB0B 4OB1B 2CYZB 4HL4A 4OB2B 3QZ9B 2QFZA 4JX6A 3A8HB 2DXBB 2ZPGB 4MIMA 4ZGDB 4Z6YA 4MFDA 1FKMA 5EJCA 3HZJA 3HB9A 3HBLA 2WJ9A 2AHJB 2DD4B 3DL1A 3X24B 1QLBA 3QYEA 2ZCFB 3A8MB 4OB3B 2DPPB 4JX4A 4JX5A 4HLQA 2CZ1B 2ZPHB 1UGRB 3X28B 4BBRM 4MFEA 3BG5A 3X20B 4HNUA 3TW6A 3VKHA 3BG3A 3QYGB 4AKIA 4FM4B 3WVDB 2ZPBB 3A8GB 2DXCB 4M6VA 2CZ7B 2QDYB 3TW7A 3A8OB 4LOCA 3X26B 3VKGA 4ZGEB 4HNTA 3QZ5B 2QF7A 4NC6A 1V29B 2CZ6B 1UGQB 4BBSM 4ZGJB 2CZ0B
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4BBR M;  4BBS M; 
#chains in the Genus database with same CATH topology
 4EOP B;  2BS3 A;  4EOJ B;  2D0Q B;  3QXE B;  3EJ1 B;  3MY5 B;  1VIN A;  3GTM S;  1E7P A;  3TNH B;  3M03 A;  2IW6 B;  1O9K A;  2WXV B;  4YOS A;  4CFM B;  4BCJ B;  2ZPE B;  4ELJ A;  1GH6 B;  4AI6 A;  1TFB A;  2C5N B;  5FGK B;  4BCP B;  3QYB A;  2PK2 A;  1IRE B;  3BG9 A;  4BY1 X;  2ZPI B;  1QMZ B;  5IHY A;  4ROD A;  3KHI A;  2QQ8 A;  2WHB B;  2CYZ B;  5CYI B;  5BNJ B;  3QZ9 B;  4F7S B;  3A8H B;  4ZGD B;  3G33 B;  1FKM A;  4CFN B;  2WPA B;  4II5 B;  4BCN D;  4BCK B;  4UN0 A;  2WJ9 A;  4CFW B;  3NDQ A;  2DD4 B;  3X24 B;  2ZCF B;  3A8M B;  3TN8 B;  2IN3 A;  4OB3 B;  3BHU B;  2DPP B;  1JOW A;  2QGS A;  3EOC B;  2C5V B;  1VOL A;  3X28 B;  4BCO B;  3BG5 A;  2JGZ B;  1OL2 B;  2I53 A;  4IMY B;  3WVD B;  1UNL D;  2ZPB B;  1ENW A;  4BCN B;  2QDY B;  5HBE B;  4LOC A;  3X26 B;  3DTO A;  4ZGE B;  2X1N B;  2BKZ B;  4HNT A;  3QHW B;  4EOS B;  2W99 A;  3BHT B;  1H1Q B;  4ROE A;  1V29 B;  2F2C A;  4BCM D;  2WIP B;  1N4M A;  2KMG A;  4EC8 B;  2WFY B;  3DDQ B;  3POM A;  2IVX A;  1OKW B;  3QWL A;  1OL1 B;  3VYG B;  3H4C A;  2BPM B;  2ZPF B;  3X25 B;  4BCM B;  1FVV B;  2CJM B;  2G77 A;  4EOO B;  3MI9 B;  4OB2 B;  1H1P B;  2UZB B;  4EON B;  2QFZ A;  4EOL B;  4YOO A;  4JX6 A;  1ZP2 A;  2WIH B;  2DXB B;  5IDP B;  4MIM A;  4F7L B;  5EJC A;  3HZJ A;  3BLR B;  3HBL A;  2IW8 B;  2UZL B;  5ICP B;  1H1R B;  3QYE A;  4OR5 B;  4Y72 B;  5IF1 B;  2C6T B;  2W9Z A;  4ELL A;  4JX5 A;  4CXA B;  2CZ1 B;  1UGR B;  4BBR M;  4MFE A;  1TD6 A;  2EUF A;  3TW6 A;  1OIY B;  3VKH A;  2WEV B;  4AKI A;  1OKV B;  3EID B;  1UNH D;  3RGF B;  1P5E B;  3O0G D;  4BCI B;  4G6L B;  4CFV B;  4CRL B;  3DDP B;  3K7A M;  3TNW B;  5CEI B;  1URC B;  4BCF B;  4ZGJ B;  1D3U B;  4AKH A;  4BCH B;  1UGS B;  4BXX X;  4YC3 B;  3VYH B;  1AHJ B;  4YOZ A;  3HO8 A;  2ZZD B;  5DQV A;  5ACB A;  3WVE B;  4ROC A;  3QYH B;  4AKG A;  1E9H B;  4OGR B;  4EC9 B;  5HQ0 B;  1GUX B;  4FX3 B;  5IDN B;  2DD5 B;  2I40 B;  4HL4 A;  1UNG D;  4NST B;  2PJQ A;  2ZPG B;  4Z6Y A;  2W96 A;  2DME A;  1W98 B;  1H1S B;  5I5Z B;  3HB9 A;  4EOR B;  2PK9 B;  1BU2 A;  5LMK B;  2UZD B;  3MIA B;  3BLH B;  1H27 B;  3DOG B;  4EOM B;  2CCH B;  1VYW B;  1QLB A;  2B9R A;  4JX4 A;  4HLQ A;  5EFQ B;  4EOK B;  2C4G B;  2C5X B;  2C5O B;  2UZE B;  3QHR B;  4HNU A;  3BG3 A;  3QYG B;  2PMI B;  5LQF B;  2DXC B;  4M6V A;  2R7G A;  2W9F A;  4F6U B;  1O9K B;  3TW7 A;  3A8O B;  3VKG A;  3LQ5 B;  3F5X B;  2G9X B;  4KRD B;  1XO2 A;  3QZ5 B;  4BCG B;  2QF7 A;  2LW4 A;  4F6W B;  5L2W B;  4NC6 A;  3BLQ B;  1UGQ B;  4BBS M;  1OIU B;  4EOQ B;  1JST B;  2IW9 B;  4CFX B;  4QSH A;  2QDJ A;  4KRC B;  1UGP B;  1H25 B;  1FIN B;  3B57 A;  1PKD B;  1GY3 B;  2BS2 A;  4HNV A;  1AD6 A;  1F5Q B;  5HNB B;  3BHV B;  5DQW A;  3A8L B;  4BCQ D;  1JSU B;  1H26 B;  3HHT B;  2KR6 A;  1H4L D;  2BS4 A;  4CFU D;  4OB0 B;  4OB1 B;  5HBJ B;  4I3Z B;  4F7N B;  1OI9 B;  4MFD A;  1AIS B;  5HBH B;  2V22 B;  4TTH A;  4BY7 X;  2UUE B;  1JKW A;  1H28 B;  2AHJ B;  4BCQ B;  2WMB B;  3DL1 A;  1GUX A;  4CFU B;  3MY1 B;  3TNI B;  4F7J B;  1OGU B;  4EOI B;  2WMA B;  2ZPH B;  1KXU A;  3DJB A;  3X20 B;  2CCI B;  4FM4 B;  3A8G B;  4F70 B;  3PO3 S;  4F6S B;  2CZ7 B;  5HVY B;  2PHG A;  1G3N C;  1H24 B;  1C9B A;  2W2H A;  2CZ6 B;  2CZ0 B; 
#chains in the Genus database with same CATH homology
 4AKH A;  2KMG A;  2BS3 A;  4QSH A;  2D0Q B;  3QXE B;  1UGS B;  2QDJ A;  1E7P A;  1UGP B;  3VYH B;  1AHJ B;  3HO8 A;  2BS2 A;  2ZZD B;  4HNV A;  3WVE B;  2ZPE B;  3QYH B;  4ELJ A;  4AKG A;  4AI6 A;  3QWL A;  3QYB A;  3VYG B;  1IRE B;  3A8L B;  3BG9 A;  3H4C A;  2ZPI B;  2ZPF B;  3HHT B;  3X25 B;  2KR6 A;  2BS4 A;  2G77 A;  2DD5 B;  3KHI A;  2QQ8 A;  4OB0 B;  4OB1 B;  2CYZ B;  4HL4 A;  4OB2 B;  3QZ9 B;  2QFZ A;  4JX6 A;  3A8H B;  2DXB B;  2ZPG B;  4MIM A;  4ZGD B;  4Z6Y A;  4MFD A;  1FKM A;  5EJC A;  3HZJ A;  3HB9 A;  3HBL A;  2WJ9 A;  2AHJ B;  2DD4 B;  3DL1 A;  3X24 B;  1QLB A;  3QYE A;  2ZCF B;  3A8M B;  4OB3 B;  2DPP B;  4JX4 A;  4JX5 A;  4HLQ A;  2CZ1 B;  2ZPH B;  1UGR B;  3X28 B;  4BBR M;  4MFE A;  3BG5 A;  3X20 B;  4HNU A;  3TW6 A;  3VKH A;  3BG3 A;  3QYG B;  4AKI A;  4FM4 B;  3WVD B;  2ZPB B;  3A8G B;  2DXC B;  4M6V A;  2CZ7 B;  2QDY B;  3TW7 A;  3A8O B;  4LOC A;  3X26 B;  3VKG A;  4ZGE B;  4HNT A;  3QZ5 B;  2QF7 A;  4NC6 A;  1V29 B;  2CZ6 B;  1UGQ B;  4BBS M;  4ZGJ B;  2CZ0 B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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