4BEX1

Structure of human cofilin1
Total Genus 46
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
46
sequence length
166
structure length
166
Chain Sequence
MASGVAVSDGVIKVFNDMKVRKSSTPEEVKKRKKAVLFCLSEDKKNIILEEGKEILVGDVGQTVDDPYATFVKMLPDKDCRYALYDATYETKESKKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKLTGIKHELQANCYEEVKDRATLAEKLGGSAVISLEGKPL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural protein
molecule keywords COFILIN-1
publication title Analysis of the Human Cofilin1 Structure Reveals Conformational Changes Required for Actin-Binding
pubmed doi rcsb
source organism Homo sapiens
total genus 46
structure length 166
sequence length 166
ec nomenclature
pdb deposition date 2013-03-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
1 PF00241 Cofilin_ADF Cofilin/tropomyosin-type actin-binding protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 4bex100
1M2VA 1MDUA 2VILA 2KVKA 4KEDA 2LJ8A 2NUPB 3A5NS 3A5LS 5KYXB 2LLFA 5KYNA 5FAEA 4CBWG 4JD2H 4PKGG 2MP4A 2MV2A 2FF6G 4BEX1 2FH2A 5KYYB 2VACA 1F7SA 5HVKB 2D8BA 4CBUG 1H1VG 3EGXA 1TMWA 5KYWA 5A1MA 5IVUA 1SVRA 1YAGG 1D0NA 4S10C 1T44G 3A5OS 1PD0A 3EG9A 3EFOA 1WFSA 2NUPA 1X67A 5KYUB 1QPVA 5KYXA 1AK7A 1VFQA 4PKHB 1P8XA 1CFYA 2FH1A 3FG6A 2FH4A 1Q8GA 5KYYA 1SVQA 2W0IA 4Z94G 2XF1A 1NPHA 1WNJA 3EGDB 5HVKD 2NUTA 1UDMA 3FFNA 1T3XA 2FF3A 4CBXG 1WM4A 1VKKA 1CNUA 1JHWA 2FH3A 1NLVG 1YVNG 1M2VB 2VIKA 2QTVA 3CIPG 1ESVS 1RGIG 2LXXA 4LIZA 3TU5B 1COFA 1P8ZG 1NMDG 5L6WC 2I2QA 4KEFA 5KYUA 1HQZ1 3L50A 1C0GS 1V6FA 1Q8XA 1T3YA 1TVJA 2FGHA 3CI5G 1T2LA 3EH2A 2HD7A 4PKIG 1NM1G 1PCXA 3CJCG 1PD1A 2XFAA 3A5MS 3EGXB 1AHQA 3Q2BA 5KYWB 1J72A 3DAWB 1SVYA 4KEEA 1EQYS 3EGDA 2L72A 1C0FS 2MOTA 1M4JA 1KCQA 3EH1A 5DD2A 5FAFA 2NUTB 1M2OA 3FFKA 1DEJS 3EG9B 3CJBG 3EFOB 1D4XG 1AK6A 3FG7A
chains in the Genus database with same CATH superfamily
1M2VA 1MDUA 2VILA 2KVKA 4KEDA 2LJ8A 2NUPB 3A5NS 3A5LS 5KYXB 2LLFA 5KYNA 5FAEA 4CBWG 4JD2H 4PKGG 2MP4A 2MV2A 2FF6G 4BEX1 2FH2A 5KYYB 2VACA 1F7SA 5HVKB 2D8BA 4CBUG 1H1VG 3EGXA 1TMWA 5KYWA 5A1MA 5IVUA 1SVRA 1YAGG 1D0NA 4S10C 1T44G 3A5OS 1PD0A 3DA7A 3EG9A 3EFOA 1WFSA 2NUPA 1X67A 5KYUB 1QPVA 5KYXA 1AK7A 1VFQA 4PKHB 1P8XA 1CFYA 2FH1A 3FG6A 2FH4A 1Q8GA 5KYYA 1SVQA 2W0IA 4Z94G 2XF1A 1NPHA 1WNJA 3EGDB 5HVKD 2NUTA 1UDMA 3FFNA 1T3XA 2FF3A 4CBXG 1WM4A 1VKKA 1CNUA 1JHWA 2FH3A 1NLVG 1YVNG 1M2VB 2VIKA 2QTVA 3CIPG 1ESVS 1RGIG 2LXXA 4LIZA 3TU5B 1COFA 1P8ZG 1NMDG 5L6WC 2I2QA 4KEFA 5KYUA 1HQZ1 3L50A 1C0GS 1V6FA 1Q8XA 1T3YA 1TVJA 2FGHA 3CI5G 1T2LA 3EH2A 2HD7A 4PKIG 1NM1G 1PCXA 3CJCG 1PD1A 2XFAA 3A5MS 3EGXB 1AHQA 3Q2BA 5KYWB 1J72A 3DAWB 1SVYA 4KEEA 1EQYS 3EGDA 2L72A 1C0FS 2MOTA 1M4JA 1KCQA 3EH1A 5DD2A 5FAFA 2NUTB 1M2OA 3FFKA 1DEJS 3EG9B 3CJBG 3EFOB 1D4XG 1AK6A 3FG7A
chains in the Genus database with same CATH topology
1M2VA 1MDUA 2VILA 2KVKA 4KEDA 2LJ8A 2NUPB 3A5NS 3A5LS 5KYXB 2LLFA 5KYNA 5FAEA 4CBWG 4JD2H 4PKGG 2MP4A 2MV2A 2FF6G 4BEX1 2FH2A 5KYYB 2VACA 1F7SA 5HVKB 2D8BA 4CBUG 1H1VG 3EGXA 1TMWA 5KYWA 5A1MA 5IVUA 1SVRA 1YAGG 1D0NA 4S10C 1T44G 3A5OS 1PD0A 3DA7A 3EG9A 3EFOA 1WFSA 2NUPA 1X67A 5KYUB 1QPVA 5KYXA 1AK7A 1VFQA 4PKHB 1P8XA 1CFYA 2FH1A 3FG6A 2FH4A 1Q8GA 5KYYA 1SVQA 2W0IA 4Z94G 2XF1A 1NPHA 1WNJA 3EGDB 5HVKD 2NUTA 1UDMA 3FFNA 1T3XA 2FF3A 4CBXG 1WM4A 1VKKA 1CNUA 1JHWA 2FH3A 1NLVG 1YVNG 1M2VB 2VIKA 2QTVA 3CIPG 1ESVS 1RGIG 2LXXA 4LIZA 3TU5B 1COFA 1P8ZG 1NMDG 5L6WC 2I2QA 4KEFA 5KYUA 1HQZ1 3L50A 1C0GS 1V6FA 1Q8XA 1T3YA 1TVJA 2FGHA 3CI5G 1T2LA 3EH2A 2HD7A 4PKIG 1NM1G 1PCXA 3CJCG 1PD1A 2XFAA 3A5MS 3EGXB 1AHQA 3Q2BA 5KYWB 1J72A 3DAWB 1SVYA 4KEEA 1EQYS 3EGDA 2L72A 1C0FS 2MOTA 1M4JA 1KCQA 3EH1A 5DD2A 5FAFA 2NUTB 1M2OA 3FFKA 1DEJS 3EG9B 3CJBG 3EFOB 1D4XG 1AK6A 3FG7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1M2V A;  1MDU A;  2VIL A;  2KVK A;  4KED A;  2LJ8 A;  2NUP B;  3A5N S;  3A5L S;  5KYX B;  2LLF A;  5KYN A;  5FAE A;  4CBW G;  4JD2 H;  4PKG G;  2MP4 A;  2MV2 A;  2FF6 G;  4BEX 1;  2FH2 A;  5KYY B;  2VAC A;  1F7S A;  5HVK B;  2D8B A;  4CBU G;  1H1V G;  3EGX A;  1TMW A;  5KYW A;  5A1M A;  5IVU A;  1SVR A;  1YAG G;  1D0N A;  4S10 C;  1T44 G;  3A5O S;  1PD0 A;  3EG9 A;  3EFO A;  1WFS A;  2NUP A;  1X67 A;  5KYU B;  1QPV A;  5KYX A;  1AK7 A;  1VFQ A;  4PKH B;  1P8X A;  1CFY A;  2FH1 A;  3FG6 A;  2FH4 A;  1Q8G A;  5KYY A;  1SVQ A;  2W0I A;  4Z94 G;  2XF1 A;  1NPH A;  1WNJ A;  3EGD B;  5HVK D;  2NUT A;  1UDM A;  3FFN A;  1T3X A;  2FF3 A;  4CBX G;  1WM4 A;  1VKK A;  1CNU A;  1JHW A;  2FH3 A;  1NLV G;  1YVN G;  1M2V B;  2VIK A;  2QTV A;  3CIP G;  1ESV S;  1RGI G;  2LXX A;  4LIZ A;  3TU5 B;  1COF A;  1P8Z G;  1NMD G;  5L6W C;  2I2Q A;  4KEF A;  5KYU A;  1HQZ 1;  3L50 A;  1C0G S;  1V6F A;  1Q8X A;  1T3Y A;  1TVJ A;  2FGH A;  3CI5 G;  1T2L A;  3EH2 A;  2HD7 A;  4PKI G;  1NM1 G;  1PCX A;  3CJC G;  1PD1 A;  2XFA A;  3A5M S;  3EGX B;  1AHQ A;  3Q2B A;  5KYW B;  1J72 A;  3DAW B;  1SVY A;  4KEE A;  1EQY S;  3EGD A;  2L72 A;  1C0F S;  2MOT A;  1M4J A;  1KCQ A;  3EH1 A;  5DD2 A;  5FAF A;  2NUT B;  1M2O A;  3FFK A;  1DEJ S;  3EG9 B;  3CJB G;  3EFO B;  1D4X G;  1AK6 A;  3FG7 A; 
#chains in the Genus database with same CATH topology
 1M2V A;  1MDU A;  2VIL A;  2KVK A;  4KED A;  2LJ8 A;  2NUP B;  3A5N S;  3A5L S;  5KYX B;  2LLF A;  5KYN A;  5FAE A;  4CBW G;  4JD2 H;  4PKG G;  2MP4 A;  2MV2 A;  2FF6 G;  4BEX 1;  2FH2 A;  5KYY B;  2VAC A;  1F7S A;  5HVK B;  2D8B A;  4CBU G;  1H1V G;  3EGX A;  1TMW A;  5KYW A;  5A1M A;  5IVU A;  1SVR A;  1YAG G;  1D0N A;  4S10 C;  1T44 G;  3A5O S;  1PD0 A;  3DA7 A;  3EG9 A;  3EFO A;  1WFS A;  2NUP A;  1X67 A;  5KYU B;  1QPV A;  5KYX A;  1AK7 A;  1VFQ A;  4PKH B;  1P8X A;  1CFY A;  2FH1 A;  3FG6 A;  2FH4 A;  1Q8G A;  5KYY A;  1SVQ A;  2W0I A;  4Z94 G;  2XF1 A;  1NPH A;  1WNJ A;  3EGD B;  5HVK D;  2NUT A;  1UDM A;  3FFN A;  1T3X A;  2FF3 A;  4CBX G;  1WM4 A;  1VKK A;  1CNU A;  1JHW A;  2FH3 A;  1NLV G;  1YVN G;  1M2V B;  2VIK A;  2QTV A;  3CIP G;  1ESV S;  1RGI G;  2LXX A;  4LIZ A;  3TU5 B;  1COF A;  1P8Z G;  1NMD G;  5L6W C;  2I2Q A;  4KEF A;  5KYU A;  1HQZ 1;  3L50 A;  1C0G S;  1V6F A;  1Q8X A;  1T3Y A;  1TVJ A;  2FGH A;  3CI5 G;  1T2L A;  3EH2 A;  2HD7 A;  4PKI G;  1NM1 G;  1PCX A;  3CJC G;  1PD1 A;  2XFA A;  3A5M S;  3EGX B;  1AHQ A;  3Q2B A;  5KYW B;  1J72 A;  3DAW B;  1SVY A;  4KEE A;  1EQY S;  3EGD A;  2L72 A;  1C0F S;  2MOT A;  1M4J A;  1KCQ A;  3EH1 A;  5DD2 A;  5FAF A;  2NUT B;  1M2O A;  3FFK A;  1DEJ S;  3EG9 B;  3CJB G;  3EFO B;  1D4X G;  1AK6 A;  3FG7 A; 
#chains in the Genus database with same CATH homology
 1M2V A;  1MDU A;  2VIL A;  2KVK A;  4KED A;  2LJ8 A;  2NUP B;  3A5N S;  3A5L S;  5KYX B;  2LLF A;  5KYN A;  5FAE A;  4CBW G;  4JD2 H;  4PKG G;  2MP4 A;  2MV2 A;  2FF6 G;  4BEX 1;  2FH2 A;  5KYY B;  2VAC A;  1F7S A;  5HVK B;  2D8B A;  4CBU G;  1H1V G;  3EGX A;  1TMW A;  5KYW A;  5A1M A;  5IVU A;  1SVR A;  1YAG G;  1D0N A;  4S10 C;  1T44 G;  3A5O S;  1PD0 A;  3DA7 A;  3EG9 A;  3EFO A;  1WFS A;  2NUP A;  1X67 A;  5KYU B;  1QPV A;  5KYX A;  1AK7 A;  1VFQ A;  4PKH B;  1P8X A;  1CFY A;  2FH1 A;  3FG6 A;  2FH4 A;  1Q8G A;  5KYY A;  1SVQ A;  2W0I A;  4Z94 G;  2XF1 A;  1NPH A;  1WNJ A;  3EGD B;  5HVK D;  2NUT A;  1UDM A;  3FFN A;  1T3X A;  2FF3 A;  4CBX G;  1WM4 A;  1VKK A;  1CNU A;  1JHW A;  2FH3 A;  1NLV G;  1YVN G;  1M2V B;  2VIK A;  2QTV A;  3CIP G;  1ESV S;  1RGI G;  2LXX A;  4LIZ A;  3TU5 B;  1COF A;  1P8Z G;  1NMD G;  5L6W C;  2I2Q A;  4KEF A;  5KYU A;  1HQZ 1;  3L50 A;  1C0G S;  1V6F A;  1Q8X A;  1T3Y A;  1TVJ A;  2FGH A;  3CI5 G;  1T2L A;  3EH2 A;  2HD7 A;  4PKI G;  1NM1 G;  1PCX A;  3CJC G;  1PD1 A;  2XFA A;  3A5M S;  3EGX B;  1AHQ A;  3Q2B A;  5KYW B;  1J72 A;  3DAW B;  1SVY A;  4KEE A;  1EQY S;  3EGD A;  2L72 A;  1C0F S;  2MOT A;  1M4J A;  1KCQ A;  3EH1 A;  5DD2 A;  5FAF A;  2NUT B;  1M2O A;  3FFK A;  1DEJ S;  3EG9 B;  3CJB G;  3EFO B;  1D4X G;  1AK6 A;  3FG7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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