4BHHB

Crystal structure of tetramer of la crosse virus nucleoprotein in complex with ssrna
Total Genus 70
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
70
sequence length
231
structure length
231
Chain Sequence
DLVFYDVASTGANGFDPDAGYMDFCVKNAESLNLAAVRIFFLNAAKAKAALSRKPERKANPKFGEWQVEVINNHFPGNRNNPIGNNDLTIHRLSGYLARWVLDQYNENDDESQHELIRTTIINPIAESNGVGWDSGPEIYLSFFPGTEMFLETFKFYPLTIGIHRVKQGMMDPQYLKKALRQRYGTLTADKWMSQKVAAIAKSLKDVEQLKWGKGGLSDTAKTFLQKFGIR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Viral protein/rna
molecule keywords NUCLEOPROTEIN
publication title Structural Basis for Encapsidation of Genomic RNA by La Crosse Orthobunyavirus Nucleoprotein.
pubmed doi rcsb
source organism La crosse virus
total genus 70
structure length 231
sequence length 231
chains with identical sequence D, F, Z
ec nomenclature
pdb deposition date 2013-04-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00952 Bunya_nucleocap Bunyavirus nucleocapsid (N) protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.142.20 Mainly Alpha Up-down Bundle Poly(ADP-ribose) Polymerase; domain 1 Poly(ADP-ribose) Polymerase; domain 1 4bhhB01
3.90.25.50 Alpha Beta Alpha-Beta Complex UDP-galactose 4-epimerase; domain 1 UDP-galactose 4-epimerase; domain 1 4bhhB02
4IDUA 4IDUB 3ZLAA 4J1GA 4BGPA 4J1JA 4JNGA 4BHHB 4IDXA 4IJSA 3ZL9A
chains in the Genus database with same CATH superfamily
3I6IA 1Z75A 1KEPA 4ZZXA 1I2BA 1N2SA 1K6JA 2VUTA 2P5YA 1I3NA 1GY8A 3RUFA 3SXPA 4OQAC 1A26A 1I3LA 1KEWA 2UV8A 1TI7A 1EQ2A 2EXXA 1HZJA 3RUDA 4UNDA 4L7NA 3C49A 1I2CA 1VL0A 1KBZA 1KVSA 2VRCD 1FXSA 1UK1A 4PAXA 2WM3A 1R66A 1Z45A 2ZCVA 3KO8A 4L70A 2C5EA 2C54A 4BKPA 1E7QA 2Z1MA 4R6EA 4WPGA 3VPSA 3W1VA 4L7LA 1N7GA 4IDUB 2BLLA 3E48A 3PAXA 3I5MA 3L3MA 1E6UA 3ZL9A 1Z7BA 4GV2A 5IN4A 4BL5A 1A9YA 1GFSA 3EHEA 1RPNA 2X86A 3KJDA 1EFYA 4GLLA 4G5HA 4ZZYA 2VRBA 4L7PA 4L7OA 4B8ZA 1KVQA 1LRLA 4E5YA 2QW8A 1QYCA 4PJVA 4TVJA 2VRCA 4JNGA 1QRRA 4IJSA 1UDCA 2JL1A 2Q1SA 4HHYA 3LU1A 2B69A 4LW8A 3AW9A 4HHZA 4ZRMA 1KVRA 1UK0A 2GGSA 3C1OA 3ZLAA 4WOKA 4J1GA 4BGPA 4J1JA 1XGKA 1GS0A 4IDXA 1BSVA 1KC1A 1EK5A 4GV0A 1PAXA 1I24A 1KVTA 4IDGA 4LISA 3SC6A 3L3LA 2R2GA 4ID9A 2GNAA 4DQYC 1RKXA 2Q1UA 4B8WA 1G1AA 1E7RA 3FHBA 1SB8A 1NAHA 2HUNA 1LRKA 3SLGA 1UDBA 3ENKA 1DB3A 3RUAA 4GV7A 3GN7A 1KETA 1SB9A 3I6QA 2UDPA 4IDUA 2VUUA 4R5WA 4ZRNA 1E7SA 4ZZZA 1EK6A 2PK3A 2Q1TA 4TWRA 4RV6A 4L7UA 1KERA 5IN5A 1BXKA 2QX7A 1QYDA 2HRZA 2P5UA 2QYSA 2ZCUA 5U9CA 2Z95A 1NAIA 3PVZA 2GN9A 1T2AA 1OC2A 2WMDA 4OPXC 1K6IA 4XHUA 1BWSA 3RU7A 1KC3A 2PZJA 2C59A 1XELA 3C4HA 2QZZA 1K6XA 1I3MA 1WVGA 4EJ0A 3CE0A 2X6TA 1WOKA 1Z74A 2RCWA 1UDAA 1U9JA 2GASA 2C20A 1N7HA 3I52A 4UXBA 2GN4A 3RUEA 3VVCA 2GN8A 2R6JA 4L6SA 1A9ZA 2PAWA 1LRJA 2PAXA 3RUHA 3ICPA 4PJTA 4BHHB 3KCZA 4L6ZA 2CNBA 2RD6A 3DXFA 2C5AA 3GJWA 1Z73A 1R6DA 1I3KA 3C3XA 5A00A 3E5MA 2GN6A 5GY7A 3RU9A 1KVUA 2VUSA 4GV4A 1KEUA 4L7RA 4OQBC 3RUCA
chains in the Genus database with same CATH topology
2GN4A 3VVCA 2GN8A 4IDUA 4G5HA 2UV8A 4JNGA 4BHHB 4IJSA 3PVZA 2GN9A 3ZLAA 4J1GA 4BGPA 4J1JA 4IDXA 2GN6A 3W1VA 4IDGA 4IDUB 2GNAA 4ID9A 3ZL9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4IDU A;  4IDU B;  3ZLA A;  4J1G A;  4BGP A;  4J1J A;  4JNG A;  4BHH B;  4IDX A;  4IJS A;  3ZL9 A; 
#chains in the Genus database with same CATH topology
 3I6I A;  1Z75 A;  1KEP A;  4ZZX A;  1I2B A;  1N2S A;  1K6J A;  2VUT A;  2P5Y A;  1I3N A;  1GY8 A;  3RUF A;  3SXP A;  4OQA C;  1A26 A;  1I3L A;  1KEW A;  2UV8 A;  1TI7 A;  1EQ2 A;  2EXX A;  1HZJ A;  3RUD A;  4UND A;  4L7N A;  3C49 A;  1I2C A;  1VL0 A;  1KBZ A;  1KVS A;  2VRC D;  1FXS A;  1UK1 A;  4PAX A;  2WM3 A;  1R66 A;  1Z45 A;  2ZCV A;  3KO8 A;  4L70 A;  2C5E A;  2C54 A;  4BKP A;  1E7Q A;  2Z1M A;  4R6E A;  4WPG A;  3VPS A;  3W1V A;  4L7L A;  1N7G A;  4IDU B;  2BLL A;  3E48 A;  3PAX A;  3I5M A;  3L3M A;  1E6U A;  3ZL9 A;  1Z7B A;  4GV2 A;  5IN4 A;  4BL5 A;  1A9Y A;  1GFS A;  3EHE A;  1RPN A;  2X86 A;  3KJD A;  1EFY A;  4GLL A;  4G5H A;  4ZZY A;  2VRB A;  4L7P A;  4L7O A;  4B8Z A;  1KVQ A;  1LRL A;  4E5Y A;  2QW8 A;  1QYC A;  4PJV A;  4TVJ A;  2VRC A;  4JNG A;  1QRR A;  4IJS A;  1UDC A;  2JL1 A;  2Q1S A;  4HHY A;  3LU1 A;  2B69 A;  4LW8 A;  3AW9 A;  4HHZ A;  4ZRM A;  1KVR A;  1UK0 A;  2GGS A;  3C1O A;  3ZLA A;  4WOK A;  4J1G A;  4BGP A;  4J1J A;  1XGK A;  1GS0 A;  4IDX A;  1BSV A;  1KC1 A;  1EK5 A;  4GV0 A;  1PAX A;  1I24 A;  1KVT A;  4IDG A;  4LIS A;  3SC6 A;  3L3L A;  2R2G A;  4ID9 A;  2GNA A;  4DQY C;  1RKX A;  2Q1U A;  4B8W A;  1G1A A;  1E7R A;  3FHB A;  1SB8 A;  1NAH A;  2HUN A;  1LRK A;  3SLG A;  1UDB A;  3ENK A;  1DB3 A;  3RUA A;  4GV7 A;  3GN7 A;  1KET A;  1SB9 A;  3I6Q A;  2UDP A;  4IDU A;  2VUU A;  4R5W A;  4ZRN A;  1E7S A;  4ZZZ A;  1EK6 A;  2PK3 A;  2Q1T A;  4TWR A;  4RV6 A;  4L7U A;  1KER A;  5IN5 A;  1BXK A;  2QX7 A;  1QYD A;  2HRZ A;  2P5U A;  2QYS A;  2ZCU A;  5U9C A;  2Z95 A;  1NAI A;  3PVZ A;  2GN9 A;  1T2A A;  1OC2 A;  2WMD A;  4OPX C;  1K6I A;  4XHU A;  1BWS A;  3RU7 A;  1KC3 A;  2PZJ A;  2C59 A;  1XEL A;  3C4H A;  2QZZ A;  1K6X A;  1I3M A;  1WVG A;  4EJ0 A;  3CE0 A;  2X6T A;  1WOK A;  1Z74 A;  2RCW A;  1UDA A;  1U9J A;  2GAS A;  2C20 A;  1N7H A;  3I52 A;  4UXB A;  2GN4 A;  3RUE A;  3VVC A;  2GN8 A;  2R6J A;  4L6S A;  1A9Z A;  2PAW A;  1LRJ A;  2PAX A;  3RUH A;  3ICP A;  4PJT A;  4BHH B;  3KCZ A;  4L6Z A;  2CNB A;  2RD6 A;  3DXF A;  2C5A A;  3GJW A;  1Z73 A;  1R6D A;  1I3K A;  3C3X A;  5A00 A;  3E5M A;  2GN6 A;  5GY7 A;  3RU9 A;  1KVU A;  2VUS A;  4GV4 A;  1KEU A;  4L7R A;  4OQB C;  3RUC A; 
#chains in the Genus database with same CATH homology
 2GN4 A;  3VVC A;  2GN8 A;  4IDU A;  4G5H A;  2UV8 A;  4JNG A;  4BHH B;  4IJS A;  3PVZ A;  2GN9 A;  3ZLA A;  4J1G A;  4BGP A;  4J1J A;  4IDX A;  2GN6 A;  3W1V A;  4IDG A;  4IDU B;  2GNA A;  4ID9 A;  3ZL9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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