4BOPA

Structure of otud1 otu domain
Total Genus 49
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
49
sequence length
149
structure length
149
Chain Sequence
KLALYLAEVEKQDKYLRQRNKYRFHIIPDGNCLYRAVSKTVYGDQSLHRELREQTVHYIADHLDHFSPLIEGDVGEFIIAAAQDGAWAGYPELLAMGQMLNVNIHLTTGGRLESPTVSTMIHYLGPEDSLRPSIWLSWLSNGHYDAVFD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
molecule keywords OTU DOMAIN-CONTAINING PROTEIN 1
publication title Otu Deubiquitinases Reveal Mechanisms of Linkage Specificity and Enable Ubiquitin Chain Restriction Analysis.
pubmed doi rcsb
source organism Homo sapiens
total genus 49
structure length 149
sequence length 149
chains with identical sequence B
ec nomenclature ec 3.4.19.12: Ubiquitinyl hydrolase 1.
pdb deposition date 2013-05-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02338 OTU OTU-like cysteine protease
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.70.80 Alpha Beta Alpha-Beta Complex Cathepsin B; Chain A Cathepsin B; Chain A 4bopA00
3PHXA 3PRPA 4BOPA 5JZEA 3PSEA 3PRMA 3PHUA 3ZNHA 3PHWA 3TMPA 3BY4A 4BOUA 4HXDB 4BOQA 4BOSA 3PT2A 4BOZA 3C0RA
chains in the Genus database with same CATH superfamily
4RF1A 2R9MA 1U9VA 3OVZA 1GECE 3PHUA 1YALA 2E03A 2P0RA 4BOQA 1ATKA 1YK7A 3AI8A 4N8WA 1YT7A 2E00A 1MDWA 2DC9A 1UKFA 3LXSA 1MS6A 3HHAA 4M0WA 2VHFA 2DC8A 4Q8HA 1MHWA 4IP3A 3OF8A 2BDLA 4OVZB 3B79A 1TU6A 2GHUA 2FTDA 3CBJA 4W4UA 5K16A 4CDEB 2DCDA 2P86A 3N4CA 3HD3A 5J94A 1FH0A 1F2CA 2AYNA 3RVWA 3C0RA 2HH5A 2AS8A 2P7UA 1Y4HA 2XU1A 4FIPA 2CIOA 4RKXA 4BOSA 3ERVA 1BQIA 4HWYA 1F2BA 3P5UA 3ZUAA 2BU3A 3RVXA 2G6DA 1PADA 5CVMA 3PT2A 3PHXA 1X9YA 2FRAA 3KX1A 4RY2A 1NPZA 3OVXA 1PPPA 4MSXA 3S3QA 5JA7A 1EWMA 1CPJA 3S3RA 3HHIA 2HD5A 4YVAA 3MTNA 2B1NA 4PP2E 2ARYA 4OEMA 5EZQA 1AU3A 3NHEA 2FYEA 2G8EA 2H7JA 3USVA 4BQVA 4KLBA 2R9OA 3ZNHA 2XU3A 4ZUXU 3DF0A 5CVOB 3B21A 2OZ2A 1MEGA 3TRKA 2JTCA 4YYSA 3PDFA 1PIPA 1AU0A 3TMPA 3QSDA 1AYUA 3BWKA 3KW9A 1DEUA 2AU1A 2PBHA 3K24A 1F2AA 4A5UA 1EWPA 3PW3A 3IEJA 4RF0A 1EF7A 4QBBA 2DCAA 4FJCA 3IUTA 3H6SA 1K3BB 1QMYA 2YJCA 2Z84A 1KXRA 1F29A 3MP2A 3F75A 5EZSA 3KKUA 4N79A 1CSBB 4HXDB 2DOSA 2OP3A 4YYVA 1CB5A 3KWBX 4X6IA 8PCHA 2BTWA 1ICFA 1AIMA 4X6HA 4DMYA 1CJLA 2FUDA 3BOWA 4I05A 1NB3A 1HUCB 1QXPA 2DZZA 1KFUL 1GLOA 1PXVA 3I06A 1BY8A 1NLJA 2UZJA 1YK8A 3F5VA 3MTVA 3P5VA 2XU4A 1VJVA 1MEMA 1PPNA 4D8IA 1GMYA 1EWLA 3OQCA 4W5BA 3K9MA 2PADA 1AECA 4REZA 2F1GA 4GUAA 4BPVA 4DMXA 4YYUA 4OELA 1ME4A 1DF0A 3CBKA 5CVNB 4XR7A 3HWNA 2YJ9A 3P5WA 4OVZA 4WURA 2AUZA 3MHSA 1KFXL 1ZCMA 1PE6A 2XU5A 2G7YA 4XUIA 3CH3X 4ZTBA 3V6EA 2DC7A 4YYWA 1NQCA 2F7DA 3H89A 1AU4A 2B1MA 3PRPA 3PSEA 1MIRA 4I04A 5PADA 3IOQA 4P6GA 1ZIVA 2HXZA 2FT2A 1Q6KA 1Y08A 5KO3A 1GCBA 4CDDB 3BCNA 2AYOA 4BOPA 3TNXA 2R9FA 1CTEA 2AVWA 2G8JA 3C9EA 3CH2X 3IHPA 2JQGR 2R9CA 4XZXA 1AU2A 4BS5A 1EWOA 3BPMA 4G54A 3RVVA 2DC6A 3WXFA 4PI3A 3OF9A 5JZEA 2NQGA 2DJGB 5CHTA 1U9QX 4BSQA 4CZWA 4MI7A 2Y5BA 2PNSA 4BOZA 3RNVA 1A6RA 1AYVA 3OISA 2BDZA 4X6JA 3KFQA 2C0YA 2E02A 3H8CA 4P6EA 4K7CA 4I07A 2CB5A 1THEA 2DCCA 4RNAA 1KHPA 1PVJA 5E6JA 2Y6EA 2WBFX 1POPA 1PPOA 5A24A 2NQIA 3P5XA 3WXEA 3N3GA 1QDQA 4QRVA 1CS8A 3BC3A 1CV8A 4PP1A 1TL9A 3GCBA 2ATOA 4MZSA 2DZYA 5FPWA 1BP4A 3QJ3A 4YYRA 2R6NA 2R9NA 4MM3B 4QRXA 3O65A 3LFYA 1U9WA 2IBIA 1STFE 1U9XA 3IV2A 1PPDA 1ITOA 1DKIA 3IMAA 1PBHA 1BGOA 4BOUA 3N3KA 3PNRA 4P16A 1NB5A 4PADA 3PBHA 4IUMA 1ME3A 2YJ8A 4MZOA 3V6CA 3KWZA 4OW0A 3E1ZB 3H7DA 3U8EA 2AUXA 3I3TA 3W30A 4YYQA 3BB7A 4AXLA 4BS6A 1YZBA 2NQAA 5EF4A 1AYWA 1QOLA 3BPFA 1S4VA 2E01A 4FK5A 5CHVA 2HWKA 3D6SA 3MJ5A 4PT5A 2FRQA 5JH3A 3M99A 3O0UA 3PHWA 1YVBA 1M6DA 2DJFB 1SP4B 1IWDA 4R3DA 4QH6A 1CVZA 4W5CA 1KHQA 2YJ2A 4CDCB 2FE8A 4D8EA 1U5IA 2J7QC 3QT4A 2OULA 2FO5A 1XKGA 2O6XA 1PCIA 9PAPA 2AGAA 1SNKA 3WXGA 1O0EA 4Q8GA 3W31A 4N4ZA 4D8BA 2AIMA 4AXMA 2VHSA 2JQFR 6PADA 3MORA 4CDFB 4QRGA 3E9SA 3K8UA 2ACTA 2FQ9A 2GFOA 1VSNA 4WA6A 3KSEA 2J7QA 3IFUA 2YJBA 3PRMA 7PCKA 2BTWB 3MHHA 3BBAA 2PREA 4YV8A 2HHNA 1CQDA 2NQDB 2IPPB 2DCBA 1TLOA 3BY4A 1JQPA 3O1GA 1NL6A 3H8BA 2JRIA 5EGWA 5F02A
chains in the Genus database with same CATH topology
4OW0A 4RF1A 3PRPA 3PSEA 3PHUA 3W30A 3TMPA 4BOQA 3BB7A 1YZBA 4A5UA 2HWKA 3MJ5A 4PT5A 4RF0A 5KO3A 1UKFA 4BOPA 4M0WA 4IP3A 4OVZB 3PHWA 4XZXA 2Z84A 3MP2A 5EZSA 4HXDB 4R3DA 2DOSA 5JZEA 2BTWA 3C0RA 2FE8A 4RKXA 4D8EA 4MI7A 2J7QC 4BOSA 4BOZA 3RNVA 2BU3A 2AGAA 3PT2A 3PHXA 2UZJA 3MTVA 3W31A 4RNAA 4D8BA 1PVJA 5E6JA 4D8IA 3OQCA 3E9SA 2J7QA 3IFUA 4REZA 5EZQA 3PRMA 4GUAA 2BTWB 3BBAA 3ZNHA 4MM3B 3O65A 3B21A 4OVZA 4WURA 1DKIA 3BY4A 4BOUA 3TRKA 2JTCA 4P16A 4ZTBA 4IUMA 2JRIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3PHX A;  3PRP A;  4BOP A;  5JZE A;  3PSE A;  3PRM A;  3PHU A;  3ZNH A;  3PHW A;  3TMP A;  3BY4 A;  4BOU A;  4HXD B;  4BOQ A;  4BOS A;  3PT2 A;  4BOZ A;  3C0R A; 
#chains in the Genus database with same CATH topology
 4RF1 A;  2R9M A;  1U9V A;  3OVZ A;  1GEC E;  3PHU A;  1YAL A;  2E03 A;  2P0R A;  4BOQ A;  1ATK A;  1YK7 A;  3AI8 A;  4N8W A;  1YT7 A;  2E00 A;  1MDW A;  2DC9 A;  1UKF A;  3LXS A;  1MS6 A;  3HHA A;  4M0W A;  2VHF A;  2DC8 A;  4Q8H A;  1MHW A;  4IP3 A;  3OF8 A;  2BDL A;  4OVZ B;  3B79 A;  1TU6 A;  2GHU A;  2FTD A;  3CBJ A;  4W4U A;  5K16 A;  4CDE B;  2DCD A;  2P86 A;  3N4C A;  3HD3 A;  5J94 A;  1FH0 A;  1F2C A;  2AYN A;  3RVW A;  3C0R A;  2HH5 A;  2AS8 A;  2P7U A;  1Y4H A;  2XU1 A;  4FIP A;  2CIO A;  4RKX A;  4BOS A;  3ERV A;  1BQI A;  4HWY A;  1F2B A;  3P5U A;  3ZUA A;  2BU3 A;  3RVX A;  2G6D A;  1PAD A;  5CVM A;  3PT2 A;  3PHX A;  1X9Y A;  2FRA A;  3KX1 A;  4RY2 A;  1NPZ A;  3OVX A;  1PPP A;  4MSX A;  3S3Q A;  5JA7 A;  1EWM A;  1CPJ A;  3S3R A;  3HHI A;  2HD5 A;  4YVA A;  3MTN A;  2B1N A;  4PP2 E;  2ARY A;  4OEM A;  5EZQ A;  1AU3 A;  3NHE A;  2FYE A;  2G8E A;  2H7J A;  3USV A;  4BQV A;  4KLB A;  2R9O A;  3ZNH A;  2XU3 A;  4ZUX U;  3DF0 A;  5CVO B;  3B21 A;  2OZ2 A;  1MEG A;  3TRK A;  2JTC A;  4YYS A;  3PDF A;  1PIP A;  1AU0 A;  3TMP A;  3QSD A;  1AYU A;  3BWK A;  3KW9 A;  1DEU A;  2AU1 A;  2PBH A;  3K24 A;  1F2A A;  4A5U A;  1EWP A;  3PW3 A;  3IEJ A;  4RF0 A;  1EF7 A;  4QBB A;  2DCA A;  4FJC A;  3IUT A;  3H6S A;  1K3B B;  1QMY A;  2YJC A;  2Z84 A;  1KXR A;  1F29 A;  3MP2 A;  3F75 A;  5EZS A;  3KKU A;  4N79 A;  1CSB B;  4HXD B;  2DOS A;  2OP3 A;  4YYV A;  1CB5 A;  3KWB X;  4X6I A;  8PCH A;  2BTW A;  1ICF A;  1AIM A;  4X6H A;  4DMY A;  1CJL A;  2FUD A;  3BOW A;  4I05 A;  1NB3 A;  1HUC B;  1QXP A;  2DZZ A;  1KFU L;  1GLO A;  1PXV A;  3I06 A;  1BY8 A;  1NLJ A;  2UZJ A;  1YK8 A;  3F5V A;  3MTV A;  3P5V A;  2XU4 A;  1VJV A;  1MEM A;  1PPN A;  4D8I A;  1GMY A;  1EWL A;  3OQC A;  4W5B A;  3K9M A;  2PAD A;  1AEC A;  4REZ A;  2F1G A;  4GUA A;  4BPV A;  4DMX A;  4YYU A;  4OEL A;  1ME4 A;  1DF0 A;  3CBK A;  5CVN B;  4XR7 A;  3HWN A;  2YJ9 A;  3P5W A;  4OVZ A;  4WUR A;  2AUZ A;  3MHS A;  1KFX L;  1ZCM A;  1PE6 A;  2XU5 A;  2G7Y A;  4XUI A;  3CH3 X;  4ZTB A;  3V6E A;  2DC7 A;  4YYW A;  1NQC A;  2F7D A;  3H89 A;  1AU4 A;  2B1M A;  3PRP A;  3PSE A;  1MIR A;  4I04 A;  5PAD A;  3IOQ A;  4P6G A;  1ZIV A;  2HXZ A;  2FT2 A;  1Q6K A;  1Y08 A;  5KO3 A;  1GCB A;  4CDD B;  3BCN A;  2AYO A;  4BOP A;  3TNX A;  2R9F A;  1CTE A;  2AVW A;  2G8J A;  3C9E A;  3CH2 X;  3IHP A;  2JQG R;  2R9C A;  4XZX A;  1AU2 A;  4BS5 A;  1EWO A;  3BPM A;  4G54 A;  3RVV A;  2DC6 A;  3WXF A;  4PI3 A;  3OF9 A;  5JZE A;  2NQG A;  2DJG B;  5CHT A;  1U9Q X;  4BSQ A;  4CZW A;  4MI7 A;  2Y5B A;  2PNS A;  4BOZ A;  3RNV A;  1A6R A;  1AYV A;  3OIS A;  2BDZ A;  4X6J A;  3KFQ A;  2C0Y A;  2E02 A;  3H8C A;  4P6E A;  4K7C A;  4I07 A;  2CB5 A;  1THE A;  2DCC A;  4RNA A;  1KHP A;  1PVJ A;  5E6J A;  2Y6E A;  2WBF X;  1POP A;  1PPO A;  5A24 A;  2NQI A;  3P5X A;  3WXE A;  3N3G A;  1QDQ A;  4QRV A;  1CS8 A;  3BC3 A;  1CV8 A;  4PP1 A;  1TL9 A;  3GCB A;  2ATO A;  4MZS A;  2DZY A;  5FPW A;  1BP4 A;  3QJ3 A;  4YYR A;  2R6N A;  2R9N A;  4MM3 B;  4QRX A;  3O65 A;  3LFY A;  1U9W A;  2IBI A;  1STF E;  1U9X A;  3IV2 A;  1PPD A;  1ITO A;  1DKI A;  3IMA A;  1PBH A;  1BGO A;  4BOU A;  3N3K A;  3PNR A;  4P16 A;  1NB5 A;  4PAD A;  3PBH A;  4IUM A;  1ME3 A;  2YJ8 A;  4MZO A;  3V6C A;  3KWZ A;  4OW0 A;  3E1Z B;  3H7D A;  3U8E A;  2AUX A;  3I3T A;  3W30 A;  4YYQ A;  3BB7 A;  4AXL A;  4BS6 A;  1YZB A;  2NQA A;  5EF4 A;  1AYW A;  1QOL A;  3BPF A;  1S4V A;  2E01 A;  4FK5 A;  5CHV A;  2HWK A;  3D6S A;  3MJ5 A;  4PT5 A;  2FRQ A;  5JH3 A;  3M99 A;  3O0U A;  3PHW A;  1YVB A;  1M6D A;  2DJF B;  1SP4 B;  1IWD A;  4R3D A;  4QH6 A;  1CVZ A;  4W5C A;  1KHQ A;  2YJ2 A;  4CDC B;  2FE8 A;  4D8E A;  1U5I A;  2J7Q C;  3QT4 A;  2OUL A;  2FO5 A;  1XKG A;  2O6X A;  1PCI A;  9PAP A;  2AGA A;  1SNK A;  3WXG A;  1O0E A;  4Q8G A;  3W31 A;  4N4Z A;  4D8B A;  2AIM A;  4AXM A;  2VHS A;  2JQF R;  6PAD A;  3MOR A;  4CDF B;  4QRG A;  3E9S A;  3K8U A;  2ACT A;  2FQ9 A;  2GFO A;  1VSN A;  4WA6 A;  3KSE A;  2J7Q A;  3IFU A;  2YJB A;  3PRM A;  7PCK A;  2BTW B;  3MHH A;  3BBA A;  2PRE A;  4YV8 A;  2HHN A;  1CQD A;  2NQD B;  2IPP B;  2DCB A;  1TLO A;  3BY4 A;  1JQP A;  3O1G A;  1NL6 A;  3H8B A;  2JRI A;  5EGW A;  5F02 A; 
#chains in the Genus database with same CATH homology
 4OW0 A;  4RF1 A;  3PRP A;  3PSE A;  3PHU A;  3W30 A;  3TMP A;  4BOQ A;  3BB7 A;  1YZB A;  4A5U A;  2HWK A;  3MJ5 A;  4PT5 A;  4RF0 A;  5KO3 A;  1UKF A;  4BOP A;  4M0W A;  4IP3 A;  4OVZ B;  3PHW A;  4XZX A;  2Z84 A;  3MP2 A;  5EZS A;  4HXD B;  4R3D A;  2DOS A;  5JZE A;  2BTW A;  3C0R A;  2FE8 A;  4RKX A;  4D8E A;  4MI7 A;  2J7Q C;  4BOS A;  4BOZ A;  3RNV A;  2BU3 A;  2AGA A;  3PT2 A;  3PHX A;  2UZJ A;  3MTV A;  3W31 A;  4RNA A;  4D8B A;  1PVJ A;  5E6J A;  4D8I A;  3OQC A;  3E9S A;  2J7Q A;  3IFU A;  4REZ A;  5EZQ A;  3PRM A;  4GUA A;  2BTW B;  3BBA A;  3ZNH A;  4MM3 B;  3O65 A;  3B21 A;  4OVZ A;  4WUR A;  1DKI A;  3BY4 A;  4BOU A;  3TRK A;  2JTC A;  4P16 A;  4ZTB A;  4IUM A;  2JRI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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