4BOQA

Structure of otud2 otu domain
Total Genus 55
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
55
sequence length
175
structure length
175
Chain Sequence
KRGASSYVRETLPVLTRTVVPADNSCLFTSVYYVVEGGVLNPACAPEMRRLIAQIVASDPDFYSEAILGKTNQEYCDWIKRDDTWGGAIEISILSKFYQCEICVVDTQTVRIDRFGEDAGYTKRVLLIYDGIHYDPLQRNFPDPDTPPLTIFSSNDDIVLVQALELADEARRRRQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords UBIQUITIN THIOESTERASE OTU1
publication title Otu Deubiquitinases Reveal Mechanisms of Linkage Specificity and Enable Ubiquitin Chain Restriction Analysis.
pubmed doi rcsb
source organism Homo sapiens
total genus 55
structure length 175
sequence length 175
ec nomenclature ec 3.4.19.12: Ubiquitinyl hydrolase 1.
pdb deposition date 2013-05-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02338 OTU OTU-like cysteine protease
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.70.80 Alpha Beta Alpha-Beta Complex Cathepsin B; Chain A Cathepsin B; Chain A 4boqA00
3PRPA 3PRMA 4BOSA 5JZEA 3TMPA 3PHWA 4BOQA 4BOPA 3PT2A 3ZNHA 4HXDB 4BOUA 3PSEA 3C0RA 3PHUA 3PHXA 3BY4A 4BOZA
chains in the Genus database with same CATH superfamily
2Y5BA 3TMPA 3H89A 1PVJA 5J94A 3BWKA 3PHXA 4PP2E 4CDEB 2XU1A 1ICFA 3K24A 3GCBA 5CHTA 1SNKA 5KO3A 3BCNA 2AVWA 3P5VA 2FTDA 1AU3A 1U9XA 2IBIA 5A24A 4CDFB 2F7DA 4W5CA 4RNAA 4BS6A 4FIPA 4P6GA 3RVVA 1YK8A 2ACTA 1O0EA 1Q6KA 3D6SA 2HXZA 2FO5A 2ATOA 3H7DA 3P5UA 1U9WA 5PADA 2JQGR 3WXFA 4WA6A 2DC9A 1U9QX 2AYOA 1PBHA 3IMAA 1A6RA 3MTNA 4XZXA 2B1NA 2IPPB 3MHHA 4RY2A 1THEA 2FYEA 2HHNA 4FJCA 2AYNA 4R3DA 3LXSA 4XUIA 4OVZA 3LFYA 3O1GA 2DC7A 3KW9A 4ZUXU 1Y4HA 4YYVA 1VSNA 5JA7A 3HHAA 4XR7A 5CVOB 5JZEA 1MEGA 2GFOA 4BOQA 1DEUA 1CTEA 1AYUA 1GECE 1SP4B 3PRMA 3KKUA 4D8IA 2G8JA 4P16A 1POPA 2NQGA 1GCBA 5EZQA 1NLJA 2UZJA 3P5WA 1MEMA 3OVZA 3DF0A 1EWMA 1CVZA 2F1GA 4N8WA 2NQAA 3CBJA 1JQPA 3O65A 2Y6EA 2C0YA 3KWBX 4YVAA 3V6CA 5CHVA 2NQDB 1KXRA 2J7QC 3MORA 4MZSA 3RVWA 1U9VA 4BOZA 4PT5A 4RF1A 3PW3A 3H8CA 4HWYA 1HUCB 2XU4A 3BPMA 2FRAA 4QBBA 1XKGA 4RKXA 4YYQA 1MHWA 2R6NA 4OVZB 4YYUA 1VJVA 1ME4A 8PCHA 2DC8A 1NB3A 3U8EA 2DJFB 4BS5A 3C9EA 2BTWA 2HWKA 1TL9A 1KFXL 1QMYA 3NHEA 1NQCA 1PPPA 1AIMA 2CB5A 3ERVA 3BBAA 2AIMA 2E01A 1IWDA 4OW0A 5E6JA 3E1ZB 1PCIA 2E00A 3WXGA 4IP3A 2CIOA 2AGAA 4MM3B 4I05A 2AUZA 5EGWA 3PRPA 2R9OA 2OZ2A 4BPVA 3CH3X 3OQCA 4YV8A 3HWNA 3I3TA 3S3RA 4Q8GA 2G8EA 1ATKA 3USVA 2BDZA 3AI8A 3BOWA 3KWZA 2ARYA 1NPZA 4D8BA 3MHSA 5EF4A 5CVMA 1UKFA 4BOUA 3O0UA 1AU4A 4W4UA 1KHQA 3BPFA 2YJ2A 4N79A 4BQVA 1BQIA 2DCBA 2R9CA 4RF0A 4OELA 3B79A 4DMXA 1MS6A 1BGOA 4GUAA 3B21A 1AYWA 4N4ZA 3PSEA 1QDQA 2B1MA 1CSBB 3H8BA 3PBHA 3F5VA 2FRQA 4CDDB 2NQIA 1CPJA 2P86A 1PADA 1PE6A 3MTVA 4AXMA 2FQ9A 2DZZA 4IUMA 3ZNHA 3PDFA 1EWPA 2GHUA 1K3BB 1GMYA 1CV8A 1F2BA 5CVNB 3V6EA 2JTCA 1EWOA 1GLOA 1STFE 3OF9A 2Z84A 1CQDA 4PP1A 1QXPA 3N3GA 4P6EA 4X6JA 1M6DA 3K8UA 4HXDB 3HD3A 2XU3A 1DKIA 5K16A 3WXEA 2R9FA 4CDCB 3QSDA 2DCAA 3PHUA 3OF8A 2WBFX 1ITOA 1X9YA 3N4CA 1QOLA 3CH2X 1AECA 1BY8A 2O6XA 3CBKA 3HHIA 2H7JA 3IHPA 2JRIA 1NL6A 4PI3A 1CJLA 3S3QA 1KHPA 4REZA 1YALA 4FK5A 3BY4A 2YJCA 1ME3A 2J7QA 2G7YA 3P5XA 3TNXA 1U5IA 4I07A 4G54A 1YZBA 4YYRA 1F2AA 4MSXA 6PADA 2AUXA 3QJ3A 2BU3A 2PBHA 1TU6A 1F2CA 4QRVA 2P7UA 2E03A 3IFUA 3OISA 3PHWA 4I04A 2AU1A 1PXVA 1AU2A 3N3KA 2AS8A 1FH0A 2FT2A 2VHFA 3I06A 4MI7A 2FUDA 4QH6A 4KLBA 5EZSA 1PPDA 3BC3A 1MIRA 2DCDA 4MZOA 1MDWA 3IOQA 2P0RA 1CB5A 2G6DA 4QRXA 4DMYA 1YK7A 3IEJA 3IUTA 4A5UA 3BB7A 2BTWB 2DC6A 3KSEA 2BDLA 4M0WA 1PIPA 1ZCMA 4OEMA 4BSQA 4WURA 2OULA 3ZUAA 1AU0A 4QRGA 2DCCA 2HH5A 2JQFR 3W30A 2PADA 3QT4A 2FE8A 1Y08A 2OP3A 1DF0A 3M99A 1AYVA 2XU5A 4PADA 5JH3A 2PNSA 1KFUL 1PPNA 5F02A 2YJBA 3MP2A 1ZIVA 3H6SA 1PPOA 4BOPA 2VHSA 3K9MA 3PNRA 1CS8A 3MJ5A 5FPWA 3KFQA 3TRKA 4D8EA 4X6IA 3RVXA 1F29A 1BP4A 1EF7A 2YJ9A 3PT2A 3C0RA 3IV2A 4AXLA 3W31A 4YYWA 2PREA 4X6HA 2E02A 7PCKA 2DZYA 2DJGB 3E9SA 1TLOA 1S4VA 2HD5A 4YYSA 4W5BA 3OVXA 2R9MA 3F75A 2YJ8A 4CZWA 2DOSA 1EWLA 4ZTBA 9PAPA 4Q8HA 2R9NA 3RNVA 1YVBA 1NB5A 4K7CA 3KX1A 1YT7A 4BOSA
chains in the Genus database with same CATH topology
5EZSA 3TMPA 1PVJA 2J7QC 3PHXA 4BOZA 5KO3A 3MTVA 4PT5A 4RF1A 4IUMA 3ZNHA 4RNAA 4A5UA 3BB7A 2BTWB 4RKXA 4M0WA 4OVZB 4WURA 2JTCA 2BTWA 2HWKA 2Z84A 3W30A 2FE8A 3MP2A 4HXDB 3BBAA 4OW0A 5E6JA 1DKIA 4XZXA 4BOPA 4IP3A 3PHUA 2AGAA 3MJ5A 4MM3B 3TRKA 4D8EA 4R3DA 3PRPA 3OQCA 4OVZA 3PT2A 2JRIA 3C0RA 3W31A 4REZA 3BY4A 2J7QA 5JZEA 4BOQA 3E9SA 3PRMA 1YZBA 4D8BA 4D8IA 4P16A 4BOUA 1UKFA 2BU3A 5EZQA 2UZJA 2DOSA 4ZTBA 4RF0A 3IFUA 3PHWA 3RNVA 4MI7A 3O65A 4GUAA 3B21A 3PSEA 4BOSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3PRP A;  3PRM A;  4BOS A;  5JZE A;  3TMP A;  3PHW A;  4BOQ A;  4BOP A;  3PT2 A;  3ZNH A;  4HXD B;  4BOU A;  3PSE A;  3C0R A;  3PHU A;  3PHX A;  3BY4 A;  4BOZ A; 
#chains in the Genus database with same CATH topology
 2Y5B A;  3TMP A;  3H89 A;  1PVJ A;  5J94 A;  3BWK A;  3PHX A;  4PP2 E;  4CDE B;  2XU1 A;  1ICF A;  3K24 A;  3GCB A;  5CHT A;  1SNK A;  5KO3 A;  3BCN A;  2AVW A;  3P5V A;  2FTD A;  1AU3 A;  1U9X A;  2IBI A;  5A24 A;  4CDF B;  2F7D A;  4W5C A;  4RNA A;  4BS6 A;  4FIP A;  4P6G A;  3RVV A;  1YK8 A;  2ACT A;  1O0E A;  1Q6K A;  3D6S A;  2HXZ A;  2FO5 A;  2ATO A;  3H7D A;  3P5U A;  1U9W A;  5PAD A;  2JQG R;  3WXF A;  4WA6 A;  2DC9 A;  1U9Q X;  2AYO A;  1PBH A;  3IMA A;  1A6R A;  3MTN A;  4XZX A;  2B1N A;  2IPP B;  3MHH A;  4RY2 A;  1THE A;  2FYE A;  2HHN A;  4FJC A;  2AYN A;  4R3D A;  3LXS A;  4XUI A;  4OVZ A;  3LFY A;  3O1G A;  2DC7 A;  3KW9 A;  4ZUX U;  1Y4H A;  4YYV A;  1VSN A;  5JA7 A;  3HHA A;  4XR7 A;  5CVO B;  5JZE A;  1MEG A;  2GFO A;  4BOQ A;  1DEU A;  1CTE A;  1AYU A;  1GEC E;  1SP4 B;  3PRM A;  3KKU A;  4D8I A;  2G8J A;  4P16 A;  1POP A;  2NQG A;  1GCB A;  5EZQ A;  1NLJ A;  2UZJ A;  3P5W A;  1MEM A;  3OVZ A;  3DF0 A;  1EWM A;  1CVZ A;  2F1G A;  4N8W A;  2NQA A;  3CBJ A;  1JQP A;  3O65 A;  2Y6E A;  2C0Y A;  3KWB X;  4YVA A;  3V6C A;  5CHV A;  2NQD B;  1KXR A;  2J7Q C;  3MOR A;  4MZS A;  3RVW A;  1U9V A;  4BOZ A;  4PT5 A;  4RF1 A;  3PW3 A;  3H8C A;  4HWY A;  1HUC B;  2XU4 A;  3BPM A;  2FRA A;  4QBB A;  1XKG A;  4RKX A;  4YYQ A;  1MHW A;  2R6N A;  4OVZ B;  4YYU A;  1VJV A;  1ME4 A;  8PCH A;  2DC8 A;  1NB3 A;  3U8E A;  2DJF B;  4BS5 A;  3C9E A;  2BTW A;  2HWK A;  1TL9 A;  1KFX L;  1QMY A;  3NHE A;  1NQC A;  1PPP A;  1AIM A;  2CB5 A;  3ERV A;  3BBA A;  2AIM A;  2E01 A;  1IWD A;  4OW0 A;  5E6J A;  3E1Z B;  1PCI A;  2E00 A;  3WXG A;  4IP3 A;  2CIO A;  2AGA A;  4MM3 B;  4I05 A;  2AUZ A;  5EGW A;  3PRP A;  2R9O A;  2OZ2 A;  4BPV A;  3CH3 X;  3OQC A;  4YV8 A;  3HWN A;  3I3T A;  3S3R A;  4Q8G A;  2G8E A;  1ATK A;  3USV A;  2BDZ A;  3AI8 A;  3BOW A;  3KWZ A;  2ARY A;  1NPZ A;  4D8B A;  3MHS A;  5EF4 A;  5CVM A;  1UKF A;  4BOU A;  3O0U A;  1AU4 A;  4W4U A;  1KHQ A;  3BPF A;  2YJ2 A;  4N79 A;  4BQV A;  1BQI A;  2DCB A;  2R9C A;  4RF0 A;  4OEL A;  3B79 A;  4DMX A;  1MS6 A;  1BGO A;  4GUA A;  3B21 A;  1AYW A;  4N4Z A;  3PSE A;  1QDQ A;  2B1M A;  1CSB B;  3H8B A;  3PBH A;  3F5V A;  2FRQ A;  4CDD B;  2NQI A;  1CPJ A;  2P86 A;  1PAD A;  1PE6 A;  3MTV A;  4AXM A;  2FQ9 A;  2DZZ A;  4IUM A;  3ZNH A;  3PDF A;  1EWP A;  2GHU A;  1K3B B;  1GMY A;  1CV8 A;  1F2B A;  5CVN B;  3V6E A;  2JTC A;  1EWO A;  1GLO A;  1STF E;  3OF9 A;  2Z84 A;  1CQD A;  4PP1 A;  1QXP A;  3N3G A;  4P6E A;  4X6J A;  1M6D A;  3K8U A;  4HXD B;  3HD3 A;  2XU3 A;  1DKI A;  5K16 A;  3WXE A;  2R9F A;  4CDC B;  3QSD A;  2DCA A;  3PHU A;  3OF8 A;  2WBF X;  1ITO A;  1X9Y A;  3N4C A;  1QOL A;  3CH2 X;  1AEC A;  1BY8 A;  2O6X A;  3CBK A;  3HHI A;  2H7J A;  3IHP A;  2JRI A;  1NL6 A;  4PI3 A;  1CJL A;  3S3Q A;  1KHP A;  4REZ A;  1YAL A;  4FK5 A;  3BY4 A;  2YJC A;  1ME3 A;  2J7Q A;  2G7Y A;  3P5X A;  3TNX A;  1U5I A;  4I07 A;  4G54 A;  1YZB A;  4YYR A;  1F2A A;  4MSX A;  6PAD A;  2AUX A;  3QJ3 A;  2BU3 A;  2PBH A;  1TU6 A;  1F2C A;  4QRV A;  2P7U A;  2E03 A;  3IFU A;  3OIS A;  3PHW A;  4I04 A;  2AU1 A;  1PXV A;  1AU2 A;  3N3K A;  2AS8 A;  1FH0 A;  2FT2 A;  2VHF A;  3I06 A;  4MI7 A;  2FUD A;  4QH6 A;  4KLB A;  5EZS A;  1PPD A;  3BC3 A;  1MIR A;  2DCD A;  4MZO A;  1MDW A;  3IOQ A;  2P0R A;  1CB5 A;  2G6D A;  4QRX A;  4DMY A;  1YK7 A;  3IEJ A;  3IUT A;  4A5U A;  3BB7 A;  2BTW B;  2DC6 A;  3KSE A;  2BDL A;  4M0W A;  1PIP A;  1ZCM A;  4OEM A;  4BSQ A;  4WUR A;  2OUL A;  3ZUA A;  1AU0 A;  4QRG A;  2DCC A;  2HH5 A;  2JQF R;  3W30 A;  2PAD A;  3QT4 A;  2FE8 A;  1Y08 A;  2OP3 A;  1DF0 A;  3M99 A;  1AYV A;  2XU5 A;  4PAD A;  5JH3 A;  2PNS A;  1KFU L;  1PPN A;  5F02 A;  2YJB A;  3MP2 A;  1ZIV A;  3H6S A;  1PPO A;  4BOP A;  2VHS A;  3K9M A;  3PNR A;  1CS8 A;  3MJ5 A;  5FPW A;  3KFQ A;  3TRK A;  4D8E A;  4X6I A;  3RVX A;  1F29 A;  1BP4 A;  1EF7 A;  2YJ9 A;  3PT2 A;  3C0R A;  3IV2 A;  4AXL A;  3W31 A;  4YYW A;  2PRE A;  4X6H A;  2E02 A;  7PCK A;  2DZY A;  2DJG B;  3E9S A;  1TLO A;  1S4V A;  2HD5 A;  4YYS A;  4W5B A;  3OVX A;  2R9M A;  3F75 A;  2YJ8 A;  4CZW A;  2DOS A;  1EWL A;  4ZTB A;  9PAP A;  4Q8H A;  2R9N A;  3RNV A;  1YVB A;  1NB5 A;  4K7C A;  3KX1 A;  1YT7 A;  4BOS A; 
#chains in the Genus database with same CATH homology
 5EZS A;  3TMP A;  1PVJ A;  2J7Q C;  3PHX A;  4BOZ A;  5KO3 A;  3MTV A;  4PT5 A;  4RF1 A;  4IUM A;  3ZNH A;  4RNA A;  4A5U A;  3BB7 A;  2BTW B;  4RKX A;  4M0W A;  4OVZ B;  4WUR A;  2JTC A;  2BTW A;  2HWK A;  2Z84 A;  3W30 A;  2FE8 A;  3MP2 A;  4HXD B;  3BBA A;  4OW0 A;  5E6J A;  1DKI A;  4XZX A;  4BOP A;  4IP3 A;  3PHU A;  2AGA A;  3MJ5 A;  4MM3 B;  3TRK A;  4D8E A;  4R3D A;  3PRP A;  3OQC A;  4OVZ A;  3PT2 A;  2JRI A;  3C0R A;  3W31 A;  4REZ A;  3BY4 A;  2J7Q A;  5JZE A;  4BOQ A;  3E9S A;  3PRM A;  1YZB A;  4D8B A;  4D8I A;  4P16 A;  4BOU A;  1UKF A;  2BU3 A;  5EZQ A;  2UZJ A;  2DOS A;  4ZTB A;  4RF0 A;  3IFU A;  3PHW A;  3RNV A;  4MI7 A;  3O65 A;  4GUA A;  3B21 A;  3PSE A;  4BOS A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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