4BPGA

Crystal structure of bacillus subtilis dltc
Total Genus 24
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
80
structure length
79
Chain Sequence
MDFKQEVLDVLAEVCQDDIVKENPDIEIFEEGLLDFGTVELLLAIENRFDILVPITEFDRDVWNTPNNIVNQLSELKRS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ligase
molecule keywords D-ALANINE--POLY(PHOSPHORIBITOL) LIGASE SUBUNIT 2
publication title High-Resolution Structures of the D-Alanyl Carrier Protein (Dcp) Dltc from Bacillus Subtilis Reveal Equivalent Conformations of Apo- and Holo-Forms
pubmed doi rcsb
source organism Bacillus subtilis
total genus 24
structure length 79
sequence length 80
chains with identical sequence B
ec nomenclature ec 6.1.1.13: D-alanine--poly(phosphoribitol) ligase.
pdb deposition date 2013-05-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00550 PP-binding Phosphopantetheine attachment site
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.10 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A ACP-like 4bpgA00
2EHSA 1OR5A 2MR7A 3RG2A 3EJEA 4H2YC 5CZDB 4CA3A 2FVEA 1VKUA 2LIUA 5EJDA 2N98A 2KW2A 1HQBA 2FADA 2L0QA 2DNWA 1DV5A 2K93A 3CE7A 2GDYA 3EJBA 2M5RA 4PWVB 2XZ1C 4HKGA 1T8KA 3EJDA 2AFDA 2JU2A 4DG9A 2KG9A 2FVFA 1AF8A 5KP7B 2LL8A 4H2WC 2N6ZA 2GDXA 2LOLA 2KORA 3LMOA 1KLPA 2K92A 2FQ1A 2KGAA 4MRTC 4BPFA 2AFEA 2MF4A 4PXHB 2JGPA 2LIWA 5KP6B 2KOQA 2MR8A 2AVAA 4BPGA 4IZ6A 2FQ2A 2FQ0A 1DNYA 2FACA 2KOPA 4R0MA 2K2QA 2L22A 2KGCA 5HVCA 1ACPA 1X3OA 2L9FA 2N5IA 4BPHA 2K94A 1HY8A 2LKIA 3GZLA 2KGDA 3NY7B 2CNRA 2X2BA 2KOOA 2KG6A 5HV8A 5KP8B 2AF8A 1L0IA 2MVUA 2KG8A 2MY5A 2N6YA 2MD9A 2LTEA 2KOSA 2ROQA 2MVVA 2LMLA 2KR5A 2K0YA 2L4BA 2GDWA 2N5HA 1NQ4A 4NEOA 2FVAA 2VSQA 2JU1A 2N50A 2KGEA 2CG5B 4H2XC 2XZ0D 2QNWA 2LPKA 2PNGA 2KWLA 3GZMA 2EHTA 2FAEA 2CGQA 2FHSC 1F80D 2K0XA 1L0HA 2JQ4A 2CQ8A
chains in the Genus database with same CATH superfamily
2K0DX 1OR5A 2P9XA 3EJEA 1Z6MA 5CZDB 2QEXP 2Z46A 1MZ8A 3CCSP 2N98A 2GZFA 2KW2A 1HQBA 2L0QA 1Q7YQ 2VLPA 1DV5A 4GR2A 4QKOA 3LRYA 1T8KA 2L6EA 1IMQA 1ZMBA 5KP7B 4XRQA 3Q20A 3G1IA 2OARA 4H2WC 2GZJA 1VHNA 2LOLA 2FQ1A 1YITP 4F37A 1VQNP 4COPA 5JPAA 2JO0A 1S72P 2JYLA 1AYIA 2FQ2A 2GZGA 3CPWO 4QNBA 3G6EP 1IMPA 1DNYA 2PENA 2K5XA 2DGYA 5HVCA 2XT1A 5DCKA 2JBGA 1JJ2O 1M1KQ 3NY7B 4M0IA 5KP8B 3B4QA 1RO0A 3MGEA 5HGLA 3P05A 1UNKA 2EG5A 1VQ4P 1GPJA 4NEOA 2EFJA 1VQOP 2CG5B 1E0HA 2XZ0D 1VQ6P 2LPKA 2KWLA 3G71P 3U43A 3WBHA 1ZNVA 2K0XA 2KG9A 2PEJA 2MR7A 3RG2A 1QVGO 3CC4P 4CA3A 1M90Q 1IUQA 2EIAA 3EJBA 3HYBA 3DS4A 3CMEP 2XZ1C 4HKGA 1YJWP 2JU2A 3DS2A 4GR6A 1W2BO 3CCMP 2BHVA 1KLPA 4XFZA 2K92A 2VLNA 2KGAA 2PY8A 2M8LA 4IPYA 4PXHB 2KOQA 2GZEA 4UHPB 1Q82Q 1D1DA 3CCRP 1VQ7P 5I4TG 2FACA 4U0BA 4COCA 7CEIA 1BAJA 2GZIA 2L9FA 2N5IA 4BPHA 1HY8A 2LKIA 2PEMA 1KQSO 2CNRA 1K73Q 3DS0A 3VRLC 2Z44A 4U0FA 1L0IA 3CCVP 2MD9A 3DS3A 5HGOA 1M6EX 2NO8A 2CWOA 3NTEA 2VSQA 4U0DA 1VQ8P 2KGEA 3B5IA 3H0DA 5BS2A 2PNGA 4U0EA 3H47A 1Q81Q 5F2KA 1L0HA 2EHSA 1M6NA 1YI2P 1EOQA 1VKUA 3G0VA 5EJDA 2FADA 1KC8Q 1VQ9P 2GDYA 1QVFO 3DPHA 1YJNP 3CC7P 3EJDA 1A8OA 2AFDA 4DG9A 2LL8A 2N6ZA 3G28A 1RO2A 2Z45A 2KORA 4U0CA 5F2OA 1AUMA 4BPFA 2MF4A 1GXGA 2JGPA 5BS1A 1EIAA 2VLOA 1N8RQ 2AVAA 4BPGA 1BXIA 1GXHA 3CC2P 5HGMA 3CD6P 2BUOA 2KOPA 1YIJP 4R0MA 2L22A 1X3OA 1KD1Q 2K94A 2M8NA 4XROA 3GZLA 1E6JP 2X2BA 4XFYA 3G1GA 2KOOA 5HV8A 2PEOA 2PEQA 1K30A 2MVUA 3CCLP 2KG8A 2MY5A 2XV6A 1VQMP 2M8PA 2MVVA 2LMLA 3DS5A 4WYMA 2KR5A 2K0YA 2GDWA 4XFXA 2FVAA 2XXMA 1VQLP 1K9MQ 3DTJA 3CCEP 2QNWA 2OTJP 3CXCO 2LF4A 3G26A 2JQ4A 2CQ8A 5HGNA 2VLQA 2ERHA 4H2YC 2FVEA 2PEIA 1Q86Q 2LIUA 4U0AA 2DNWA 5EW5E 1UJZA 3M1MA 2WPTA 2K93A 3CE7A 2ONTA 2M5RA 4PWVB 3CMAP 4PH1A 2FVFA 1AF8A 3E2DA 3CCQP 3I55P 3CCUP 1QRJA 1YHQP 1VQPP 2GDXA 2JYGA 3LMOA 2E1MA 4MRTC 1VQKP 2KODA 2AFEA 2JB0A 2LIWA 1RNIA 5KP6B 2MR8A 1K8AQ 3G29A 4IZ6A 3GJNA 2FQ0A 3H4EA 2JAZA 1CEIA 3DS1A 3G21A 2PEKA 2K2QA 2OTLP 2KGCA 1ACPA 3HZQA 3OW2O 2QA4P 3RG6C 1FR2A 3CCJP 2KGDA 2KG6A 4PH0A 2AF8A 1M74A 2N6YA 2LTEA 2KOSA 1EMVA 2GYKA 2ROQA 3GKLC 2L4BA 2N5HA 1NQ4A 1VQ5P 2JU1A 1NJIQ 2N50A 5F2NA 4H2XC 3I56P 3GZMA 1YJ9P 2EHTA 2FAEA 2CGQA 2FHSC 1F80D 3G4SP 1A43A
chains in the Genus database with same CATH topology
2EHSA 1OR5A 2MR7A 3RG2A 3EJEA 4H2YC 5CZDB 4CA3A 2FVEA 1VKUA 2LIUA 5EJDA 2N98A 2KW2A 1HQBA 2FADA 2L0QA 2DNWA 1DV5A 2K93A 3CE7A 2GDYA 3EJBA 2M5RA 4PWVB 2XZ1C 4HKGA 1T8KA 3EJDA 2AFDA 2JU2A 4DG9A 2KG9A 2FVFA 1AF8A 5KP7B 2LL8A 4H2WC 2N6ZA 2GDXA 2LOLA 2KORA 3LMOA 1KLPA 2K92A 2FQ1A 2KGAA 4MRTC 4BPFA 2AFEA 2MF4A 4PXHB 2JGPA 2LIWA 5KP6B 2KOQA 2MR8A 2AVAA 4BPGA 4IZ6A 2FQ2A 2FQ0A 1DNYA 2FACA 2KOPA 4R0MA 2K2QA 2L22A 2KGCA 5HVCA 1ACPA 1X3OA 2L9FA 2N5IA 4BPHA 2K94A 1HY8A 2LKIA 3GZLA 2KGDA 3NY7B 2CNRA 2X2BA 2KOOA 2KG6A 5HV8A 5KP8B 2AF8A 1L0IA 2MVUA 2KG8A 2MY5A 2N6YA 2MD9A 2LTEA 2KOSA 2ROQA 2MVVA 2LMLA 2KR5A 2K0YA 2L4BA 2GDWA 2N5HA 1NQ4A 4NEOA 2FVAA 2VSQA 2JU1A 2N50A 2KGEA 2CG5B 4H2XC 2XZ0D 2QNWA 2LPKA 2PNGA 2KWLA 3GZMA 2EHTA 2FAEA 2CGQA 2FHSC 1F80D 2K0XA 1L0HA 2JQ4A 2CQ8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2EHS A;  1OR5 A;  2MR7 A;  3RG2 A;  3EJE A;  4H2Y C;  5CZD B;  4CA3 A;  2FVE A;  1VKU A;  2LIU A;  5EJD A;  2N98 A;  2KW2 A;  1HQB A;  2FAD A;  2L0Q A;  2DNW A;  1DV5 A;  2K93 A;  3CE7 A;  2GDY A;  3EJB A;  2M5R A;  4PWV B;  2XZ1 C;  4HKG A;  1T8K A;  3EJD A;  2AFD A;  2JU2 A;  4DG9 A;  2KG9 A;  2FVF A;  1AF8 A;  5KP7 B;  2LL8 A;  4H2W C;  2N6Z A;  2GDX A;  2LOL A;  2KOR A;  3LMO A;  1KLP A;  2K92 A;  2FQ1 A;  2KGA A;  4MRT C;  4BPF A;  2AFE A;  2MF4 A;  4PXH B;  2JGP A;  2LIW A;  5KP6 B;  2KOQ A;  2MR8 A;  2AVA A;  4BPG A;  4IZ6 A;  2FQ2 A;  2FQ0 A;  1DNY A;  2FAC A;  2KOP A;  4R0M A;  2K2Q A;  2L22 A;  2KGC A;  5HVC A;  1ACP A;  1X3O A;  2L9F A;  2N5I A;  4BPH A;  2K94 A;  1HY8 A;  2LKI A;  3GZL A;  2KGD A;  3NY7 B;  2CNR A;  2X2B A;  2KOO A;  2KG6 A;  5HV8 A;  5KP8 B;  2AF8 A;  1L0I A;  2MVU A;  2KG8 A;  2MY5 A;  2N6Y A;  2MD9 A;  2LTE A;  2KOS A;  2ROQ A;  2MVV A;  2LML A;  2KR5 A;  2K0Y A;  2L4B A;  2GDW A;  2N5H A;  1NQ4 A;  4NEO A;  2FVA A;  2VSQ A;  2JU1 A;  2N50 A;  2KGE A;  2CG5 B;  4H2X C;  2XZ0 D;  2QNW A;  2LPK A;  2PNG A;  2KWL A;  3GZM A;  2EHT A;  2FAE A;  2CGQ A;  2FHS C;  1F80 D;  2K0X A;  1L0H A;  2JQ4 A;  2CQ8 A; 
#chains in the Genus database with same CATH topology
 2K0D X;  1OR5 A;  2P9X A;  3EJE A;  1Z6M A;  5CZD B;  2QEX P;  2Z46 A;  1MZ8 A;  3CCS P;  2N98 A;  2GZF A;  2KW2 A;  1HQB A;  2L0Q A;  1Q7Y Q;  2VLP A;  1DV5 A;  4GR2 A;  4QKO A;  3LRY A;  1T8K A;  2L6E A;  1IMQ A;  1ZMB A;  5KP7 B;  4XRQ A;  3Q20 A;  3G1I A;  2OAR A;  4H2W C;  2GZJ A;  1VHN A;  2LOL A;  2FQ1 A;  1YIT P;  4F37 A;  1VQN P;  4COP A;  5JPA A;  2JO0 A;  1S72 P;  2JYL A;  1AYI A;  2FQ2 A;  2GZG A;  3CPW O;  4QNB A;  3G6E P;  1IMP A;  1DNY A;  2PEN A;  2K5X A;  2DGY A;  5HVC A;  2XT1 A;  5DCK A;  2JBG A;  1JJ2 O;  1M1K Q;  3NY7 B;  4M0I A;  5KP8 B;  3B4Q A;  1RO0 A;  3MGE A;  5HGL A;  3P05 A;  1UNK A;  2EG5 A;  1VQ4 P;  1GPJ A;  4NEO A;  2EFJ A;  1VQO P;  2CG5 B;  1E0H A;  2XZ0 D;  1VQ6 P;  2LPK A;  2KWL A;  3G71 P;  3U43 A;  3WBH A;  1ZNV A;  2K0X A;  2KG9 A;  2PEJ A;  2MR7 A;  3RG2 A;  1QVG O;  3CC4 P;  4CA3 A;  1M90 Q;  1IUQ A;  2EIA A;  3EJB A;  3HYB A;  3DS4 A;  3CME P;  2XZ1 C;  4HKG A;  1YJW P;  2JU2 A;  3DS2 A;  4GR6 A;  1W2B O;  3CCM P;  2BHV A;  1KLP A;  4XFZ A;  2K92 A;  2VLN A;  2KGA A;  2PY8 A;  2M8L A;  4IPY A;  4PXH B;  2KOQ A;  2GZE A;  4UHP B;  1Q82 Q;  1D1D A;  3CCR P;  1VQ7 P;  5I4T G;  2FAC A;  4U0B A;  4COC A;  7CEI A;  1BAJ A;  2GZI A;  2L9F A;  2N5I A;  4BPH A;  1HY8 A;  2LKI A;  2PEM A;  1KQS O;  2CNR A;  1K73 Q;  3DS0 A;  3VRL C;  2Z44 A;  4U0F A;  1L0I A;  3CCV P;  2MD9 A;  3DS3 A;  5HGO A;  1M6E X;  2NO8 A;  2CWO A;  3NTE A;  2VSQ A;  4U0D A;  1VQ8 P;  2KGE A;  3B5I A;  3H0D A;  5BS2 A;  2PNG A;  4U0E A;  3H47 A;  1Q81 Q;  5F2K A;  1L0H A;  2EHS A;  1M6N A;  1YI2 P;  1EOQ A;  1VKU A;  3G0V A;  5EJD A;  2FAD A;  1KC8 Q;  1VQ9 P;  2GDY A;  1QVF O;  3DPH A;  1YJN P;  3CC7 P;  3EJD A;  1A8O A;  2AFD A;  4DG9 A;  2LL8 A;  2N6Z A;  3G28 A;  1RO2 A;  2Z45 A;  2KOR A;  4U0C A;  5F2O A;  1AUM A;  4BPF A;  2MF4 A;  1GXG A;  2JGP A;  5BS1 A;  1EIA A;  2VLO A;  1N8R Q;  2AVA A;  4BPG A;  1BXI A;  1GXH A;  3CC2 P;  5HGM A;  3CD6 P;  2BUO A;  2KOP A;  1YIJ P;  4R0M A;  2L22 A;  1X3O A;  1KD1 Q;  2K94 A;  2M8N A;  4XRO A;  3GZL A;  1E6J P;  2X2B A;  4XFY A;  3G1G A;  2KOO A;  5HV8 A;  2PEO A;  2PEQ A;  1K30 A;  2MVU A;  3CCL P;  2KG8 A;  2MY5 A;  2XV6 A;  1VQM P;  2M8P A;  2MVV A;  2LML A;  3DS5 A;  4WYM A;  2KR5 A;  2K0Y A;  2GDW A;  4XFX A;  2FVA A;  2XXM A;  1VQL P;  1K9M Q;  3DTJ A;  3CCE P;  2QNW A;  2OTJ P;  3CXC O;  2LF4 A;  3G26 A;  2JQ4 A;  2CQ8 A;  5HGN A;  2VLQ A;  2ERH A;  4H2Y C;  2FVE A;  2PEI A;  1Q86 Q;  2LIU A;  4U0A A;  2DNW A;  5EW5 E;  1UJZ A;  3M1M A;  2WPT A;  2K93 A;  3CE7 A;  2ONT A;  2M5R A;  4PWV B;  3CMA P;  4PH1 A;  2FVF A;  1AF8 A;  3E2D A;  3CCQ P;  3I55 P;  3CCU P;  1QRJ A;  1YHQ P;  1VQP P;  2GDX A;  2JYG A;  3LMO A;  2E1M A;  4MRT C;  1VQK P;  2KOD A;  2AFE A;  2JB0 A;  2LIW A;  1RNI A;  5KP6 B;  2MR8 A;  1K8A Q;  3G29 A;  4IZ6 A;  3GJN A;  2FQ0 A;  3H4E A;  2JAZ A;  1CEI A;  3DS1 A;  3G21 A;  2PEK A;  2K2Q A;  2OTL P;  2KGC A;  1ACP A;  3HZQ A;  3OW2 O;  2QA4 P;  3RG6 C;  1FR2 A;  3CCJ P;  2KGD A;  2KG6 A;  4PH0 A;  2AF8 A;  1M74 A;  2N6Y A;  2LTE A;  2KOS A;  1EMV A;  2GYK A;  2ROQ A;  3GKL C;  2L4B A;  2N5H A;  1NQ4 A;  1VQ5 P;  2JU1 A;  1NJI Q;  2N50 A;  5F2N A;  4H2X C;  3I56 P;  3GZM A;  1YJ9 P;  2EHT A;  2FAE A;  2CGQ A;  2FHS C;  1F80 D;  3G4S P;  1A43 A; 
#chains in the Genus database with same CATH homology
 2EHS A;  1OR5 A;  2MR7 A;  3RG2 A;  3EJE A;  4H2Y C;  5CZD B;  4CA3 A;  2FVE A;  1VKU A;  2LIU A;  5EJD A;  2N98 A;  2KW2 A;  1HQB A;  2FAD A;  2L0Q A;  2DNW A;  1DV5 A;  2K93 A;  3CE7 A;  2GDY A;  3EJB A;  2M5R A;  4PWV B;  2XZ1 C;  4HKG A;  1T8K A;  3EJD A;  2AFD A;  2JU2 A;  4DG9 A;  2KG9 A;  2FVF A;  1AF8 A;  5KP7 B;  2LL8 A;  4H2W C;  2N6Z A;  2GDX A;  2LOL A;  2KOR A;  3LMO A;  1KLP A;  2K92 A;  2FQ1 A;  2KGA A;  4MRT C;  4BPF A;  2AFE A;  2MF4 A;  4PXH B;  2JGP A;  2LIW A;  5KP6 B;  2KOQ A;  2MR8 A;  2AVA A;  4BPG A;  4IZ6 A;  2FQ2 A;  2FQ0 A;  1DNY A;  2FAC A;  2KOP A;  4R0M A;  2K2Q A;  2L22 A;  2KGC A;  5HVC A;  1ACP A;  1X3O A;  2L9F A;  2N5I A;  4BPH A;  2K94 A;  1HY8 A;  2LKI A;  3GZL A;  2KGD A;  3NY7 B;  2CNR A;  2X2B A;  2KOO A;  2KG6 A;  5HV8 A;  5KP8 B;  2AF8 A;  1L0I A;  2MVU A;  2KG8 A;  2MY5 A;  2N6Y A;  2MD9 A;  2LTE A;  2KOS A;  2ROQ A;  2MVV A;  2LML A;  2KR5 A;  2K0Y A;  2L4B A;  2GDW A;  2N5H A;  1NQ4 A;  4NEO A;  2FVA A;  2VSQ A;  2JU1 A;  2N50 A;  2KGE A;  2CG5 B;  4H2X C;  2XZ0 D;  2QNW A;  2LPK A;  2PNG A;  2KWL A;  3GZM A;  2EHT A;  2FAE A;  2CGQ A;  2FHS C;  1F80 D;  2K0X A;  1L0H A;  2JQ4 A;  2CQ8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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