4C86A

Mouse znrf3 ectodomain crystal form i
Total Genus 40
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
152
structure length
152
Chain Sequence
ETAFVEVVLFESSPSGDYTTHTTGLTGRFSRAGAMLSAEGEIVQMHPLGLCNNNDEEDLYEYGWVGVVKLEQPELDPKPCLTVLGKAKRAVQRGATAVIFDVSENPEAIDQLNQGSEDPLKRPVVYVKGADAIKLMNIVNKQKVARARIQHL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ligase
molecule keywords E3 UBIQUITIN-PROTEIN LIGASE ZNRF3
publication title Structural and Molecular Basis of Znrf3/Rnf43 Transmembrane Ubiquitin Ligase Inhibition by the Wnt Agonist R-Spondin.
pubmed doi rcsb
source organism Mus musculus
total genus 40
structure length 152
sequence length 152
chains with identical sequence B
ec nomenclature ec 2.3.2.27: RING-type E3 ubiquitin transferase.
pdb deposition date 2013-09-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF18212 ZNRF_3_ecto ZNRF-3 Ectodomain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.30.30 Alpha Beta 3-Layer(bba) Sandwich Glucose Oxidase; domain 1 Glucose Oxidase; domain 1 4c86A00
2C6PA 3EIFA 4MCRA 2XEIA 3S9LA 2OR4A 2JBJA 4P4JA 3I6SA 3D7FA 3SJFA 4TWEA 4OC3A 4C8TA 2C6GA 2XEGA 4CDKA 4OC0A 4C86A 4OC4A 4X3RA 4JYWA 3ICUA 3IWWA 4P45A 2XEFA 4P4FA 4P4IA 2CIJA 4NGNA 4P4BA 4C9AA 1XF1A 4NGSA 5D29A 4C99A 1WVMA 5ELYA 2PVWA 1Y9ZA 4P44A 4CDJA 3BI0A 3I74A 4OMEA 3BHXA 4OC1A 3BI1A 4TJXA 4LQGA 4C9UA 1CX8A 2XEJA 4C9RA 4MCPA 3FEEA 3D7HA 3D7DA 4MCQA 3FEDA 3SJXA 4C84A 2C6CA 2JBKA 2EK9A 3S9MA 4C8AA 4JZ0A 3RBUA 4NGPA 4YN3A 1V6CA 3IIBA 4C8UA 2EK8A 3BXMA 4KNGE 5IB9A 4MCSA 3FECA 3D7GA 4P4DA 3SJGA 4TJVA 4C8CA 4C9VA 4C8PA 4C85A 1DE4C 4NGTA 2PVVA 3SJEA 4NGMA 4P4EA 3KASA 3S9NA 4W9YA 5F09A 4OC2A 2OOTA 4NGRA 3VTAA 4C9EA 1Z8LA 3FF3A 4OC5A 4C8FA 4NGQA
chains in the Genus database with same CATH superfamily
4COGA 2C6PA 1NXJA 3T0TA 3EIFA 4MCRA 4IIYA 3KRVA 2XEIA 2EZBA 5F9MA 4M8DA 1KBLA 3S9LA 2YJTA 2OR4A 2JBJA 1EZAA 4P4JA 4CZ1A 3I6SA 3D7FA 3SJFA 3TLEA 4TWEA 2AUMA 4OC3A 2GP4A 2EZCA 5FD8A 4C8TA 2C6GA 2XEGA 4CDKA 4OC0A 4C86A 3T07A 2B0AA 4OC4A 3TLCA 4INJA 4E94A 4X3RA 4MI1A 5JVLA 3SR3A 5K99A 4JYWA 3ICUA 3IWWA 4P45A 2XEFA 4P4FA 4CO9A 3EZEA 4P4IA 1EZBA 3TLZA 2CIJA 4NGNA 4P4BA 5F1YA 1C3OB 2R82A 1XF1A 4NGSA 4C9AA 4MJXA 5D29A 1JDEA 4C99A 1VI4A 1CE8B 1WVMA 5ELYA 2PVWA 2D0OA 1Y9ZA 5JYBA 4P44A 4CDJA 2D0PA 3BI0A 3I74A 5IR2A 1VBGA 4OMEA 3TLGB 3BHXA 4OC1A 3BI1A 2HROA 2EZAA 4TJXA 3TLBA 4LQGA 4JVOA 4C9UA 1CS0B 4EYSA 3TLAA 1CX8A 2XEJA 1M6VB 1BXRB 4E5SA 2X0SA 4C9RA 1KC7A 4MCPA 3FEEA 3NOJA 3D7HA 3D7DA 4MCQA 2MP0A 3FEDA 3G23A 1GGOA 3SJXA 4H1HA 1KEEB 4C84A 2C6CA 3GJZA 1T36B 2JBKA 3K9TA 2EK9A 3S9MA 4C8AA 4JZ0A 2DIKA 4NGPA 3RBUA 3T05A 1VBHA 1ZL0A 1V6CA 3IIBA 4YN3A 4C8UA 3K4IA 2EK8A 3T5MA 3BXMA 4KNGE 2AUNA 5IB9A 2HI6A 4IIXA 1Q5XA 3C8OA 3EZBA 3FECA 3D7GA 4MCSA 1NBWA 4P4DA 2E28A 2PCNA 3SJGA 4TJVA 1R61A 4C8CA 1DIKA 3TLGA 3TLYA 4C9VA 4C8PA 4C85A 1DE4C 4NGTA 2HWGA 2PVVA 1ZRSA 4J0NA 4NGMA 4P4EA 1JDBC 3SJEA 3KASA 1A9XB 3S9NA 2FM4A 4W9YA 5F09A 1J3LA 4OC2A 1C30B 2YJVA 2OOTA 3TYXA 4NGRA 3VTAA 4C9EA 1Z8LA 2OLSA 3FF3A 2C5QA 1ZYMA 5F5XA 4OC5A 3EZAA 4NGQA 4C8FA 3U1BA 4COBA
chains in the Genus database with same CATH topology
2C6PA 3EIFA 4MCRA 2XEIA 3S9LA 2OR4A 2JBJA 4P4JA 3I6SA 3D7FA 3SJFA 4TWEA 4OC3A 2GP4A 4C8TA 2C6GA 2XEGA 4CDKA 4OC0A 4C86A 4OC4A 4X3RA 4JYWA 3ICUA 3IWWA 4P45A 2XEFA 4P4FA 4P4IA 2CIJA 4NGNA 4P4BA 4C9AA 1XF1A 4NGSA 5D29A 4C99A 1WVMA 5ELYA 2PVWA 1Y9ZA 4P44A 4CDJA 3BI0A 3I74A 5IR2A 4OMEA 3BHXA 4OC1A 3BI1A 4TJXA 4LQGA 4C9UA 1CX8A 2XEJA 4C9RA 4MCPA 3FEEA 3D7HA 3D7DA 4MCQA 3FEDA 3SJXA 4C84A 2C6CA 2JBKA 3K9TA 2EK9A 3S9MA 4C8AA 4JZ0A 3RBUA 4NGPA 4YN3A 1V6CA 3IIBA 4C8UA 2EK8A 3BXMA 4KNGE 5IB9A 4MCSA 3FECA 3D7GA 4P4DA 3SJGA 4TJVA 4C8CA 4C9VA 4C8PA 4C85A 1DE4C 4NGTA 2PVVA 3SJEA 4NGMA 4P4EA 3KASA 3S9NA 4W9YA 5F09A 4OC2A 2OOTA 4NGRA 3VTAA 4C9EA 1Z8LA 3FF3A 2C5QA 4OC5A 4C8FA 4NGQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2C6P A;  3EIF A;  4MCR A;  2XEI A;  3S9L A;  2OR4 A;  2JBJ A;  4P4J A;  3I6S A;  3D7F A;  3SJF A;  4TWE A;  4OC3 A;  4C8T A;  2C6G A;  2XEG A;  4CDK A;  4OC0 A;  4C86 A;  4OC4 A;  4X3R A;  4JYW A;  3ICU A;  3IWW A;  4P45 A;  2XEF A;  4P4F A;  4P4I A;  2CIJ A;  4NGN A;  4P4B A;  4C9A A;  1XF1 A;  4NGS A;  5D29 A;  4C99 A;  1WVM A;  5ELY A;  2PVW A;  1Y9Z A;  4P44 A;  4CDJ A;  3BI0 A;  3I74 A;  4OME A;  3BHX A;  4OC1 A;  3BI1 A;  4TJX A;  4LQG A;  4C9U A;  1CX8 A;  2XEJ A;  4C9R A;  4MCP A;  3FEE A;  3D7H A;  3D7D A;  4MCQ A;  3FED A;  3SJX A;  4C84 A;  2C6C A;  2JBK A;  2EK9 A;  3S9M A;  4C8A A;  4JZ0 A;  3RBU A;  4NGP A;  4YN3 A;  1V6C A;  3IIB A;  4C8U A;  2EK8 A;  3BXM A;  4KNG E;  5IB9 A;  4MCS A;  3FEC A;  3D7G A;  4P4D A;  3SJG A;  4TJV A;  4C8C A;  4C9V A;  4C8P A;  4C85 A;  1DE4 C;  4NGT A;  2PVV A;  3SJE A;  4NGM A;  4P4E A;  3KAS A;  3S9N A;  4W9Y A;  5F09 A;  4OC2 A;  2OOT A;  4NGR A;  3VTA A;  4C9E A;  1Z8L A;  3FF3 A;  4OC5 A;  4C8F A;  4NGQ A; 
#chains in the Genus database with same CATH topology
 4COG A;  2C6P A;  1NXJ A;  3T0T A;  3EIF A;  4MCR A;  4IIY A;  3KRV A;  2XEI A;  2EZB A;  5F9M A;  4M8D A;  1KBL A;  3S9L A;  2YJT A;  2OR4 A;  2JBJ A;  1EZA A;  4P4J A;  4CZ1 A;  3I6S A;  3D7F A;  3SJF A;  3TLE A;  4TWE A;  2AUM A;  4OC3 A;  2GP4 A;  2EZC A;  5FD8 A;  4C8T A;  2C6G A;  2XEG A;  4CDK A;  4OC0 A;  4C86 A;  3T07 A;  2B0A A;  4OC4 A;  3TLC A;  4INJ A;  4E94 A;  4X3R A;  4MI1 A;  5JVL A;  3SR3 A;  5K99 A;  4JYW A;  3ICU A;  3IWW A;  4P45 A;  2XEF A;  4P4F A;  4CO9 A;  3EZE A;  4P4I A;  1EZB A;  3TLZ A;  2CIJ A;  4NGN A;  4P4B A;  5F1Y A;  1C3O B;  2R82 A;  1XF1 A;  4NGS A;  4C9A A;  4MJX A;  5D29 A;  1JDE A;  4C99 A;  1VI4 A;  1CE8 B;  1WVM A;  5ELY A;  2PVW A;  2D0O A;  1Y9Z A;  5JYB A;  4P44 A;  4CDJ A;  2D0P A;  3BI0 A;  3I74 A;  5IR2 A;  1VBG A;  4OME A;  3TLG B;  3BHX A;  4OC1 A;  3BI1 A;  2HRO A;  2EZA A;  4TJX A;  3TLB A;  4LQG A;  4JVO A;  4C9U A;  1CS0 B;  4EYS A;  3TLA A;  1CX8 A;  2XEJ A;  1M6V B;  1BXR B;  4E5S A;  2X0S A;  4C9R A;  1KC7 A;  4MCP A;  3FEE A;  3NOJ A;  3D7H A;  3D7D A;  4MCQ A;  2MP0 A;  3FED A;  3G23 A;  1GGO A;  3SJX A;  4H1H A;  1KEE B;  4C84 A;  2C6C A;  3GJZ A;  1T36 B;  2JBK A;  3K9T A;  2EK9 A;  3S9M A;  4C8A A;  4JZ0 A;  2DIK A;  4NGP A;  3RBU A;  3T05 A;  1VBH A;  1ZL0 A;  1V6C A;  3IIB A;  4YN3 A;  4C8U A;  3K4I A;  2EK8 A;  3T5M A;  3BXM A;  4KNG E;  2AUN A;  5IB9 A;  2HI6 A;  4IIX A;  1Q5X A;  3C8O A;  3EZB A;  3FEC A;  3D7G A;  4MCS A;  1NBW A;  4P4D A;  2E28 A;  2PCN A;  3SJG A;  4TJV A;  1R61 A;  4C8C A;  1DIK A;  3TLG A;  3TLY A;  4C9V A;  4C8P A;  4C85 A;  1DE4 C;  4NGT A;  2HWG A;  2PVV A;  1ZRS A;  4J0N A;  4NGM A;  4P4E A;  1JDB C;  3SJE A;  3KAS A;  1A9X B;  3S9N A;  2FM4 A;  4W9Y A;  5F09 A;  1J3L A;  4OC2 A;  1C30 B;  2YJV A;  2OOT A;  3TYX A;  4NGR A;  3VTA A;  4C9E A;  1Z8L A;  2OLS A;  3FF3 A;  2C5Q A;  1ZYM A;  5F5X A;  4OC5 A;  3EZA A;  4NGQ A;  4C8F A;  3U1B A;  4COB A; 
#chains in the Genus database with same CATH homology
 2C6P A;  3EIF A;  4MCR A;  2XEI A;  3S9L A;  2OR4 A;  2JBJ A;  4P4J A;  3I6S A;  3D7F A;  3SJF A;  4TWE A;  4OC3 A;  2GP4 A;  4C8T A;  2C6G A;  2XEG A;  4CDK A;  4OC0 A;  4C86 A;  4OC4 A;  4X3R A;  4JYW A;  3ICU A;  3IWW A;  4P45 A;  2XEF A;  4P4F A;  4P4I A;  2CIJ A;  4NGN A;  4P4B A;  4C9A A;  1XF1 A;  4NGS A;  5D29 A;  4C99 A;  1WVM A;  5ELY A;  2PVW A;  1Y9Z A;  4P44 A;  4CDJ A;  3BI0 A;  3I74 A;  5IR2 A;  4OME A;  3BHX A;  4OC1 A;  3BI1 A;  4TJX A;  4LQG A;  4C9U A;  1CX8 A;  2XEJ A;  4C9R A;  4MCP A;  3FEE A;  3D7H A;  3D7D A;  4MCQ A;  3FED A;  3SJX A;  4C84 A;  2C6C A;  2JBK A;  3K9T A;  2EK9 A;  3S9M A;  4C8A A;  4JZ0 A;  3RBU A;  4NGP A;  4YN3 A;  1V6C A;  3IIB A;  4C8U A;  2EK8 A;  3BXM A;  4KNG E;  5IB9 A;  4MCS A;  3FEC A;  3D7G A;  4P4D A;  3SJG A;  4TJV A;  4C8C A;  4C9V A;  4C8P A;  4C85 A;  1DE4 C;  4NGT A;  2PVV A;  3SJE A;  4NGM A;  4P4E A;  3KAS A;  3S9N A;  4W9Y A;  5F09 A;  4OC2 A;  2OOT A;  4NGR A;  3VTA A;  4C9E A;  1Z8L A;  3FF3 A;  2C5Q A;  4OC5 A;  4C8F A;  4NGQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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