4C8AA

Mouse znrf3 ectodomain crystal form ii
Total Genus 33
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
33
sequence length
153
structure length
146
Chain Sequence
KETAFVEVVLFESSPSGDYTTHTTGLTGRFSRAGAMLSAEGEIVQMHPLGLCLYEYGWVGVVKLEQPELDPKPCLTVLGKAKRAVQRGATAVIFDVSENPEAIDQLNQGSEDPLKRPVVYVKGADAIKLMNIVNKQKVARARIQHL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ligase
molecule keywords E3 UBIQUITIN-PROTEIN LIGASE ZNRF3
publication title Structural and Molecular Basis of Znrf3/Rnf43 Transmembrane Ubiquitin Ligase Inhibition by the Wnt Agonist R-Spondin.
pubmed doi rcsb
source organism Mus musculus
total genus 33
structure length 146
sequence length 153
chains with identical sequence B, C
ec nomenclature ec 2.3.2.27: RING-type E3 ubiquitin transferase.
pdb deposition date 2013-09-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF18212 ZNRF_3_ecto ZNRF-3 Ectodomain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.30.30 Alpha Beta 3-Layer(bba) Sandwich Glucose Oxidase; domain 1 Glucose Oxidase; domain 1 4c8aA00
2XEFA 2EK9A 4MCSA 4P4EA 3BI0A 4NGRA 4P4DA 3IWWA 4NGSA 2EK8A 4JYWA 4NGNA 3S9NA 4MCPA 4JZ0A 4CDKA 2C6GA 3FEEA 4C84A 3ICUA 4NGMA 4C8AA 2C6PA 3FECA 2PVWA 2PVVA 1WVMA 4OC3A 4LQGA 3I6SA 4C8TA 4C9EA 1CX8A 2JBKA 2JBJA 2CIJA 4OMEA 4C9UA 3RBUA 3SJGA 4C8CA 4W9YA 4NGQA 4P4FA 4P44A 4C9RA 4C85A 3BXMA 5IB9A 3D7GA 3SJFA 4C99A 3IIBA 3SJXA 4C86A 3D7DA 4C9AA 1V6CA 1Y9ZA 2XEGA 5D29A 4OC0A 1DE4C 4P45A 1Z8LA 4NGPA 3D7FA 4MCQA 3SJEA 4OC2A 5F09A 2XEJA 4YN3A 4C9VA 4NGTA 4CDJA 4P4BA 4X3RA 3VTAA 3BI1A 3I74A 4OC4A 3S9MA 4TJVA 4OC1A 3EIFA 4P4IA 4TJXA 2C6CA 3KASA 4MCRA 4KNGE 3D7HA 3BHXA 2XEIA 5ELYA 4C8FA 2OOTA 4C8PA 3FF3A 4TWEA 1XF1A 4P4JA 4C8UA 4OC5A 2OR4A 3S9LA 3FEDA
chains in the Genus database with same CATH superfamily
1C30B 2EK9A 2XEFA 3TLAA 4MCSA 4P4EA 3BI0A 4NGRA 1EZAA 4P4DA 3IWWA 4NGSA 2EK8A 4JYWA 4NGNA 3S9NA 3C8OA 3TLBA 4MCPA 1NBWA 4IIXA 1C3OB 4JZ0A 4EYSA 3GJZA 5F9MA 4CDKA 5K99A 1M6VB 3T05A 4CO9A 1ZRSA 2C6GA 4INJA 3FEEA 4C84A 2HI6A 3EZAA 3ICUA 4NGMA 4C8AA 2C6PA 1ZL0A 1KC7A 3FECA 2PVWA 2DIKA 2PVVA 2HWGA 2AUNA 4E5SA 1Q5XA 1WVMA 4OC3A 4LQGA 2EZBA 3I6SA 3SR3A 4C8TA 5F5XA 3T5MA 3T0TA 1JDBC 2D0OA 1CX8A 2JBKA 4C9EA 5JVLA 3G23A 2JBJA 3TLEA 2CIJA 4E94A 1JDEA 3TLGA 4OMEA 2HROA 4C9UA 3RBUA 2E28A 3SJGA 3TLGB 3TLCA 4C8CA 4W9YA 4NGQA 4P4FA 2D0PA 4P44A 4C9RA 4C85A 4M8DA 4CZ1A 3BXMA 4IIYA 1VBHA 1KEEB 3K9TA 4H1HA 3EZEA 1EZBA 2B0AA 5IB9A 3D7GA 2FM4A 1VI4A 3SJFA 3TLZA 2YJTA 3IIBA 3SJXA 4C86A 4C99A 3D7DA 3NOJA 4C9AA 1T36B 2R82A 4COGA 1V6CA 1CS0B 1Y9ZA 2XEGA 3K4IA 4OC0A 5D29A 1DE4C 1A9XB 1R61A 4MJXA 4P45A 5IR2A 1Z8LA 4NGPA 3D7FA 4MCQA 3SJEA 4OC2A 1NXJA 3T07A 5F09A 1BXRB 2XEJA 4YN3A 4C9VA 4NGTA 3TLYA 2PCNA 4CDJA 4P4BA 4J0NA 1GGOA 1CE8B 1ZYMA 4X3RA 1DIKA 3VTAA 3BI1A 2GP4A 3I74A 4OC4A 3S9MA 1VBGA 4TJVA 2AUMA 2MP0A 3EIFA 4OC1A 5F1YA 3KRVA 1J3LA 3U1BA 2X0SA 4JVOA 4COBA 4P4IA 4TJXA 2C6CA 1KBLA 3KASA 4MCRA 4KNGE 3D7HA 2OLSA 3BHXA 5FD8A 5JYBA 2XEIA 2EZCA 5ELYA 4C8FA 2OOTA 2C5QA 4C8PA 3EZBA 4MI1A 3FF3A 4TWEA 1XF1A 4P4JA 2EZAA 4C8UA 3TYXA 4OC5A 2OR4A 3S9LA 3FEDA 2YJVA
chains in the Genus database with same CATH topology
2XEFA 2EK9A 4MCSA 4P4EA 3BI0A 4NGRA 4P4DA 3IWWA 4NGSA 2EK8A 4JYWA 4NGNA 3S9NA 4MCPA 4JZ0A 4CDKA 2C6GA 3FEEA 4C84A 3ICUA 4NGMA 4C8AA 2C6PA 3FECA 2PVWA 2PVVA 1WVMA 4OC3A 4LQGA 3I6SA 4C8TA 4C9EA 1CX8A 2JBKA 2JBJA 2CIJA 4OMEA 4C9UA 3RBUA 3SJGA 4C8CA 4W9YA 4NGQA 4P4FA 4P44A 4C9RA 4C85A 3BXMA 3K9TA 5IB9A 3D7GA 3SJFA 4C99A 3IIBA 3SJXA 4C86A 3D7DA 4C9AA 1V6CA 1Y9ZA 2XEGA 5D29A 4OC0A 1DE4C 4P45A 5IR2A 1Z8LA 4NGPA 3D7FA 4MCQA 3SJEA 4OC2A 5F09A 2XEJA 4YN3A 4C9VA 4NGTA 4CDJA 4P4BA 4X3RA 3VTAA 3BI1A 2GP4A 3I74A 4OC4A 3S9MA 4TJVA 4OC1A 3EIFA 4P4IA 4TJXA 2C6CA 3KASA 4MCRA 4KNGE 3D7HA 3BHXA 2XEIA 5ELYA 4C8FA 2OOTA 2C5QA 4C8PA 3FF3A 4TWEA 1XF1A 4P4JA 4C8UA 4OC5A 2OR4A 3S9LA 3FEDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2XEF A;  2EK9 A;  4MCS A;  4P4E A;  3BI0 A;  4NGR A;  4P4D A;  3IWW A;  4NGS A;  2EK8 A;  4JYW A;  4NGN A;  3S9N A;  4MCP A;  4JZ0 A;  4CDK A;  2C6G A;  3FEE A;  4C84 A;  3ICU A;  4NGM A;  4C8A A;  2C6P A;  3FEC A;  2PVW A;  2PVV A;  1WVM A;  4OC3 A;  4LQG A;  3I6S A;  4C8T A;  4C9E A;  1CX8 A;  2JBK A;  2JBJ A;  2CIJ A;  4OME A;  4C9U A;  3RBU A;  3SJG A;  4C8C A;  4W9Y A;  4NGQ A;  4P4F A;  4P44 A;  4C9R A;  4C85 A;  3BXM A;  5IB9 A;  3D7G A;  3SJF A;  4C99 A;  3IIB A;  3SJX A;  4C86 A;  3D7D A;  4C9A A;  1V6C A;  1Y9Z A;  2XEG A;  5D29 A;  4OC0 A;  1DE4 C;  4P45 A;  1Z8L A;  4NGP A;  3D7F A;  4MCQ A;  3SJE A;  4OC2 A;  5F09 A;  2XEJ A;  4YN3 A;  4C9V A;  4NGT A;  4CDJ A;  4P4B A;  4X3R A;  3VTA A;  3BI1 A;  3I74 A;  4OC4 A;  3S9M A;  4TJV A;  4OC1 A;  3EIF A;  4P4I A;  4TJX A;  2C6C A;  3KAS A;  4MCR A;  4KNG E;  3D7H A;  3BHX A;  2XEI A;  5ELY A;  4C8F A;  2OOT A;  4C8P A;  3FF3 A;  4TWE A;  1XF1 A;  4P4J A;  4C8U A;  4OC5 A;  2OR4 A;  3S9L A;  3FED A; 
#chains in the Genus database with same CATH topology
 1C30 B;  2EK9 A;  2XEF A;  3TLA A;  4MCS A;  4P4E A;  3BI0 A;  4NGR A;  1EZA A;  4P4D A;  3IWW A;  4NGS A;  2EK8 A;  4JYW A;  4NGN A;  3S9N A;  3C8O A;  3TLB A;  4MCP A;  1NBW A;  4IIX A;  1C3O B;  4JZ0 A;  4EYS A;  3GJZ A;  5F9M A;  4CDK A;  5K99 A;  1M6V B;  3T05 A;  4CO9 A;  1ZRS A;  2C6G A;  4INJ A;  3FEE A;  4C84 A;  2HI6 A;  3EZA A;  3ICU A;  4NGM A;  4C8A A;  2C6P A;  1ZL0 A;  1KC7 A;  3FEC A;  2PVW A;  2DIK A;  2PVV A;  2HWG A;  2AUN A;  4E5S A;  1Q5X A;  1WVM A;  4OC3 A;  4LQG A;  2EZB A;  3I6S A;  3SR3 A;  4C8T A;  5F5X A;  3T5M A;  3T0T A;  1JDB C;  2D0O A;  1CX8 A;  2JBK A;  4C9E A;  5JVL A;  3G23 A;  2JBJ A;  3TLE A;  2CIJ A;  4E94 A;  1JDE A;  3TLG A;  4OME A;  2HRO A;  4C9U A;  3RBU A;  2E28 A;  3SJG A;  3TLG B;  3TLC A;  4C8C A;  4W9Y A;  4NGQ A;  4P4F A;  2D0P A;  4P44 A;  4C9R A;  4C85 A;  4M8D A;  4CZ1 A;  3BXM A;  4IIY A;  1VBH A;  1KEE B;  3K9T A;  4H1H A;  3EZE A;  1EZB A;  2B0A A;  5IB9 A;  3D7G A;  2FM4 A;  1VI4 A;  3SJF A;  3TLZ A;  2YJT A;  3IIB A;  3SJX A;  4C86 A;  4C99 A;  3D7D A;  3NOJ A;  4C9A A;  1T36 B;  2R82 A;  4COG A;  1V6C A;  1CS0 B;  1Y9Z A;  2XEG A;  3K4I A;  4OC0 A;  5D29 A;  1DE4 C;  1A9X B;  1R61 A;  4MJX A;  4P45 A;  5IR2 A;  1Z8L A;  4NGP A;  3D7F A;  4MCQ A;  3SJE A;  4OC2 A;  1NXJ A;  3T07 A;  5F09 A;  1BXR B;  2XEJ A;  4YN3 A;  4C9V A;  4NGT A;  3TLY A;  2PCN A;  4CDJ A;  4P4B A;  4J0N A;  1GGO A;  1CE8 B;  1ZYM A;  4X3R A;  1DIK A;  3VTA A;  3BI1 A;  2GP4 A;  3I74 A;  4OC4 A;  3S9M A;  1VBG A;  4TJV A;  2AUM A;  2MP0 A;  3EIF A;  4OC1 A;  5F1Y A;  3KRV A;  1J3L A;  3U1B A;  2X0S A;  4JVO A;  4COB A;  4P4I A;  4TJX A;  2C6C A;  1KBL A;  3KAS A;  4MCR A;  4KNG E;  3D7H A;  2OLS A;  3BHX A;  5FD8 A;  5JYB A;  2XEI A;  2EZC A;  5ELY A;  4C8F A;  2OOT A;  2C5Q A;  4C8P A;  3EZB A;  4MI1 A;  3FF3 A;  4TWE A;  1XF1 A;  4P4J A;  2EZA A;  4C8U A;  3TYX A;  4OC5 A;  2OR4 A;  3S9L A;  3FED A;  2YJV A; 
#chains in the Genus database with same CATH homology
 2XEF A;  2EK9 A;  4MCS A;  4P4E A;  3BI0 A;  4NGR A;  4P4D A;  3IWW A;  4NGS A;  2EK8 A;  4JYW A;  4NGN A;  3S9N A;  4MCP A;  4JZ0 A;  4CDK A;  2C6G A;  3FEE A;  4C84 A;  3ICU A;  4NGM A;  4C8A A;  2C6P A;  3FEC A;  2PVW A;  2PVV A;  1WVM A;  4OC3 A;  4LQG A;  3I6S A;  4C8T A;  4C9E A;  1CX8 A;  2JBK A;  2JBJ A;  2CIJ A;  4OME A;  4C9U A;  3RBU A;  3SJG A;  4C8C A;  4W9Y A;  4NGQ A;  4P4F A;  4P44 A;  4C9R A;  4C85 A;  3BXM A;  3K9T A;  5IB9 A;  3D7G A;  3SJF A;  4C99 A;  3IIB A;  3SJX A;  4C86 A;  3D7D A;  4C9A A;  1V6C A;  1Y9Z A;  2XEG A;  5D29 A;  4OC0 A;  1DE4 C;  4P45 A;  5IR2 A;  1Z8L A;  4NGP A;  3D7F A;  4MCQ A;  3SJE A;  4OC2 A;  5F09 A;  2XEJ A;  4YN3 A;  4C9V A;  4NGT A;  4CDJ A;  4P4B A;  4X3R A;  3VTA A;  3BI1 A;  2GP4 A;  3I74 A;  4OC4 A;  3S9M A;  4TJV A;  4OC1 A;  3EIF A;  4P4I A;  4TJX A;  2C6C A;  3KAS A;  4MCR A;  4KNG E;  3D7H A;  3BHX A;  2XEI A;  5ELY A;  4C8F A;  2OOT A;  2C5Q A;  4C8P A;  3FF3 A;  4TWE A;  1XF1 A;  4P4J A;  4C8U A;  4OC5 A;  2OR4 A;  3S9L A;  3FED A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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