4C8TA

Xenopus znrf3 ectodomain crystal form i
Total Genus 33
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
33
sequence length
152
structure length
146
Chain Sequence
ETAFVEVVLFESSPNGDYKTHTTELQGRFSRAGATISAEGEIVQMHPLGLCDLYEYGWVGVVKLEQPEMDPKPCLTVLGKAKRAVQRGATAVIFDVSDNPDAVEQLNQGLEDPLKRPVVYMKGMDAIKLMNIVNKQKGARARIQHR
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Ligase
molecule keywords E3 UBIQUITIN-PROTEIN LIGASE ZNRF3
publication title Structural and Molecular Basis of Znrf3/Rnf43 Transmembrane Ubiquitin Ligase Inhibition by the Wnt Agonist R-Spondin.
pubmed doi rcsb
source organism Xenopus (silurana) tropicalis
total genus 33
structure length 146
sequence length 152
chains with identical sequence B
ec nomenclature ec 2.3.2.27: RING-type E3 ubiquitin transferase.
pdb deposition date 2013-10-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF18212 ZNRF_3_ecto ZNRF-3 Ectodomain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.30.30 Alpha Beta 3-Layer(bba) Sandwich Glucose Oxidase; domain 1 Glucose Oxidase; domain 1 4c8tA00
4C9RA 1CX8A 1Y9ZA 4OC5A 2JBKA 4OC3A 4KNGE 4CDKA 2PVVA 3FEDA 4YN3A 4P4FA 4C8FA 4TJVA 3EIFA 4P4DA 4JYWA 4OC0A 4NGTA 5D29A 4C9AA 4C9UA 4NGMA 4TJXA 4C8TA 4C86A 4C8PA 3S9LA 3I6SA 3ICUA 3S9MA 3FF3A 5F09A 4C9VA 4OMEA 2PVWA 4MCQA 4OC1A 2C6GA 4C99A 4MCPA 4OC2A 4C8AA 3IIBA 2XEGA 4MCSA 3BHXA 3SJGA 3BXMA 3FEEA 1V6CA 4P4JA 1Z8LA 4X3RA 3SJFA 2OR4A 4OC4A 4NGRA 3D7HA 4NGSA 3VTAA 2XEIA 4C8UA 5ELYA 3RBUA 4C84A 4P4EA 4W9YA 4C9EA 4JZ0A 2C6PA 4P45A 2XEJA 4C8CA 3D7DA 4TWEA 2C6CA 2XEFA 4MCRA 2OOTA 3SJXA 2EK9A 3S9NA 3IWWA 4NGNA 4LQGA 4P44A 3BI1A 4NGQA 3SJEA 4C85A 3FECA 2JBJA 3BI0A 4P4BA 3D7FA 1WVMA 5IB9A 3D7GA 4P4IA 4NGPA 4CDJA 2CIJA 2EK8A 3I74A 1XF1A 3KASA 1DE4C
chains in the Genus database with same CATH superfamily
4H1HA 4C9RA 1CX8A 1VI4A 2PCNA 3NOJA 1C3OB 3K9TA 1Y9ZA 4OC5A 3EZAA 1JDBC 2JBKA 4OC3A 4KNGE 5JYBA 4E94A 4CDKA 2PVVA 1ZL0A 3FEDA 4YN3A 1Q5XA 2HWGA 1R61A 2D0PA 4P4FA 1JDEA 4C8FA 4TJVA 3SR3A 3EIFA 4P4DA 4JYWA 4OC0A 1VBGA 5F5XA 1GGOA 4NGTA 2EZBA 5D29A 3T07A 4C9AA 5JVLA 5K99A 2AUNA 4C9UA 4NGMA 4TJXA 4C8TA 4C86A 4C8PA 3KRVA 3G23A 3S9LA 3I6SA 2AUMA 3TLCA 2YJTA 2B0AA 2HROA 1CS0B 1C30B 3ICUA 3S9MA 3FF3A 4J0NA 5F09A 4C9VA 4OMEA 5FD8A 2E28A 2PVWA 3U1BA 4MCQA 4MI1A 2OLSA 4OC1A 1NXJA 2C6GA 4C99A 5F1YA 4CO9A 4MCPA 4OC2A 4C8AA 3IIBA 2XEGA 2DIKA 4MCSA 3EZBA 3BHXA 3SJGA 3TLEA 1KBLA 2EZAA 3BXMA 3FEEA 1EZAA 1V6CA 2EZCA 4P4JA 2MP0A 1Z8LA 4X3RA 4IIYA 3SJFA 2X0SA 1T36B 2OR4A 4OC4A 4JVOA 3D7HA 4NGRA 3GJZA 4NGSA 2HI6A 2FM4A 3VTAA 2XEIA 2YJVA 4C8UA 1NBWA 1ZYMA 4MJXA 5ELYA 4INJA 3RBUA 4C84A 4P4EA 4W9YA 4C9EA 4JZ0A 2GP4A 3K4IA 2C6PA 4M8DA 4P45A 4CZ1A 1A9XB 2XEJA 4EYSA 4C8CA 3D7DA 4TWEA 1KEEB 2C6CA 2XEFA 4MCRA 2OOTA 3TLZA 3TLGA 3T0TA 3SJXA 3T5MA 2EK9A 3S9NA 1VBHA 1DIKA 1ZRSA 3IWWA 4IIXA 4LQGA 4NGNA 4P44A 3BI1A 3TLYA 4NGQA 3SJEA 4C85A 1J3LA 4COGA 1CE8B 3FECA 1M6VB 2JBJA 3BI0A 3D7FA 4P4BA 1WVMA 3C8OA 1BXRB 5IB9A 1KC7A 5IR2A 3D7GA 1EZBA 4P4IA 4COBA 4E5SA 4NGPA 3T05A 2C5QA 4CDJA 2CIJA 3EZEA 2EK8A 3I74A 5F9MA 3TLAA 3TLGB 1XF1A 3TYXA 3TLBA 2D0OA 2R82A 3KASA 1DE4C
chains in the Genus database with same CATH topology
4C9RA 1CX8A 3K9TA 1Y9ZA 4OC5A 2JBKA 4OC3A 4KNGE 4CDKA 2PVVA 3FEDA 4YN3A 4P4FA 4C8FA 4TJVA 3EIFA 4P4DA 4JYWA 4OC0A 4NGTA 5D29A 4C9AA 4C9UA 4NGMA 4TJXA 4C8TA 4C86A 4C8PA 3S9LA 3I6SA 3ICUA 3S9MA 3FF3A 5F09A 4C9VA 4OMEA 2PVWA 4MCQA 4OC1A 2C6GA 4C99A 4MCPA 4OC2A 4C8AA 3IIBA 2XEGA 4MCSA 3BHXA 3SJGA 3BXMA 3FEEA 1V6CA 4P4JA 1Z8LA 4X3RA 3SJFA 2OR4A 4OC4A 4NGRA 3D7HA 4NGSA 3VTAA 2XEIA 4C8UA 5ELYA 3RBUA 4C84A 4P4EA 4W9YA 4C9EA 4JZ0A 2GP4A 2C6PA 4P45A 2XEJA 4C8CA 3D7DA 4TWEA 2C6CA 2XEFA 4MCRA 2OOTA 3SJXA 2EK9A 3S9NA 3IWWA 4NGNA 4LQGA 4P44A 3BI1A 4NGQA 3SJEA 4C85A 3FECA 2JBJA 3BI0A 4P4BA 3D7FA 1WVMA 5IB9A 5IR2A 3D7GA 4P4IA 4NGPA 2C5QA 4CDJA 2CIJA 2EK8A 3I74A 1XF1A 3KASA 1DE4C
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4C9R A;  1CX8 A;  1Y9Z A;  4OC5 A;  2JBK A;  4OC3 A;  4KNG E;  4CDK A;  2PVV A;  3FED A;  4YN3 A;  4P4F A;  4C8F A;  4TJV A;  3EIF A;  4P4D A;  4JYW A;  4OC0 A;  4NGT A;  5D29 A;  4C9A A;  4C9U A;  4NGM A;  4TJX A;  4C8T A;  4C86 A;  4C8P A;  3S9L A;  3I6S A;  3ICU A;  3S9M A;  3FF3 A;  5F09 A;  4C9V A;  4OME A;  2PVW A;  4MCQ A;  4OC1 A;  2C6G A;  4C99 A;  4MCP A;  4OC2 A;  4C8A A;  3IIB A;  2XEG A;  4MCS A;  3BHX A;  3SJG A;  3BXM A;  3FEE A;  1V6C A;  4P4J A;  1Z8L A;  4X3R A;  3SJF A;  2OR4 A;  4OC4 A;  4NGR A;  3D7H A;  4NGS A;  3VTA A;  2XEI A;  4C8U A;  5ELY A;  3RBU A;  4C84 A;  4P4E A;  4W9Y A;  4C9E A;  4JZ0 A;  2C6P A;  4P45 A;  2XEJ A;  4C8C A;  3D7D A;  4TWE A;  2C6C A;  2XEF A;  4MCR A;  2OOT A;  3SJX A;  2EK9 A;  3S9N A;  3IWW A;  4NGN A;  4LQG A;  4P44 A;  3BI1 A;  4NGQ A;  3SJE A;  4C85 A;  3FEC A;  2JBJ A;  3BI0 A;  4P4B A;  3D7F A;  1WVM A;  5IB9 A;  3D7G A;  4P4I A;  4NGP A;  4CDJ A;  2CIJ A;  2EK8 A;  3I74 A;  1XF1 A;  3KAS A;  1DE4 C; 
#chains in the Genus database with same CATH topology
 4H1H A;  4C9R A;  1CX8 A;  1VI4 A;  2PCN A;  3NOJ A;  1C3O B;  3K9T A;  1Y9Z A;  4OC5 A;  3EZA A;  1JDB C;  2JBK A;  4OC3 A;  4KNG E;  5JYB A;  4E94 A;  4CDK A;  2PVV A;  1ZL0 A;  3FED A;  4YN3 A;  1Q5X A;  2HWG A;  1R61 A;  2D0P A;  4P4F A;  1JDE A;  4C8F A;  4TJV A;  3SR3 A;  3EIF A;  4P4D A;  4JYW A;  4OC0 A;  1VBG A;  5F5X A;  1GGO A;  4NGT A;  2EZB A;  5D29 A;  3T07 A;  4C9A A;  5JVL A;  5K99 A;  2AUN A;  4C9U A;  4NGM A;  4TJX A;  4C8T A;  4C86 A;  4C8P A;  3KRV A;  3G23 A;  3S9L A;  3I6S A;  2AUM A;  3TLC A;  2YJT A;  2B0A A;  2HRO A;  1CS0 B;  1C30 B;  3ICU A;  3S9M A;  3FF3 A;  4J0N A;  5F09 A;  4C9V A;  4OME A;  5FD8 A;  2E28 A;  2PVW A;  3U1B A;  4MCQ A;  4MI1 A;  2OLS A;  4OC1 A;  1NXJ A;  2C6G A;  4C99 A;  5F1Y A;  4CO9 A;  4MCP A;  4OC2 A;  4C8A A;  3IIB A;  2XEG A;  2DIK A;  4MCS A;  3EZB A;  3BHX A;  3SJG A;  3TLE A;  1KBL A;  2EZA A;  3BXM A;  3FEE A;  1EZA A;  1V6C A;  2EZC A;  4P4J A;  2MP0 A;  1Z8L A;  4X3R A;  4IIY A;  3SJF A;  2X0S A;  1T36 B;  2OR4 A;  4OC4 A;  4JVO A;  3D7H A;  4NGR A;  3GJZ A;  4NGS A;  2HI6 A;  2FM4 A;  3VTA A;  2XEI A;  2YJV A;  4C8U A;  1NBW A;  1ZYM A;  4MJX A;  5ELY A;  4INJ A;  3RBU A;  4C84 A;  4P4E A;  4W9Y A;  4C9E A;  4JZ0 A;  2GP4 A;  3K4I A;  2C6P A;  4M8D A;  4P45 A;  4CZ1 A;  1A9X B;  2XEJ A;  4EYS A;  4C8C A;  3D7D A;  4TWE A;  1KEE B;  2C6C A;  2XEF A;  4MCR A;  2OOT A;  3TLZ A;  3TLG A;  3T0T A;  3SJX A;  3T5M A;  2EK9 A;  3S9N A;  1VBH A;  1DIK A;  1ZRS A;  3IWW A;  4IIX A;  4LQG A;  4NGN A;  4P44 A;  3BI1 A;  3TLY A;  4NGQ A;  3SJE A;  4C85 A;  1J3L A;  4COG A;  1CE8 B;  3FEC A;  1M6V B;  2JBJ A;  3BI0 A;  3D7F A;  4P4B A;  1WVM A;  3C8O A;  1BXR B;  5IB9 A;  1KC7 A;  5IR2 A;  3D7G A;  1EZB A;  4P4I A;  4COB A;  4E5S A;  4NGP A;  3T05 A;  2C5Q A;  4CDJ A;  2CIJ A;  3EZE A;  2EK8 A;  3I74 A;  5F9M A;  3TLA A;  3TLG B;  1XF1 A;  3TYX A;  3TLB A;  2D0O A;  2R82 A;  3KAS A;  1DE4 C; 
#chains in the Genus database with same CATH homology
 4C9R A;  1CX8 A;  3K9T A;  1Y9Z A;  4OC5 A;  2JBK A;  4OC3 A;  4KNG E;  4CDK A;  2PVV A;  3FED A;  4YN3 A;  4P4F A;  4C8F A;  4TJV A;  3EIF A;  4P4D A;  4JYW A;  4OC0 A;  4NGT A;  5D29 A;  4C9A A;  4C9U A;  4NGM A;  4TJX A;  4C8T A;  4C86 A;  4C8P A;  3S9L A;  3I6S A;  3ICU A;  3S9M A;  3FF3 A;  5F09 A;  4C9V A;  4OME A;  2PVW A;  4MCQ A;  4OC1 A;  2C6G A;  4C99 A;  4MCP A;  4OC2 A;  4C8A A;  3IIB A;  2XEG A;  4MCS A;  3BHX A;  3SJG A;  3BXM A;  3FEE A;  1V6C A;  4P4J A;  1Z8L A;  4X3R A;  3SJF A;  2OR4 A;  4OC4 A;  4NGR A;  3D7H A;  4NGS A;  3VTA A;  2XEI A;  4C8U A;  5ELY A;  3RBU A;  4C84 A;  4P4E A;  4W9Y A;  4C9E A;  4JZ0 A;  2GP4 A;  2C6P A;  4P45 A;  2XEJ A;  4C8C A;  3D7D A;  4TWE A;  2C6C A;  2XEF A;  4MCR A;  2OOT A;  3SJX A;  2EK9 A;  3S9N A;  3IWW A;  4NGN A;  4LQG A;  4P44 A;  3BI1 A;  4NGQ A;  3SJE A;  4C85 A;  3FEC A;  2JBJ A;  3BI0 A;  4P4B A;  3D7F A;  1WVM A;  5IB9 A;  5IR2 A;  3D7G A;  4P4I A;  4NGP A;  2C5Q A;  4CDJ A;  2CIJ A;  2EK8 A;  3I74 A;  1XF1 A;  3KAS A;  1DE4 C; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...