4CBUG

Crystal structure of plasmodium falciparum actin i
Total Genus 44
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
44
sequence length
125
structure length
125
Chain Sequence
MVVEHPEFLKAGKEPGLQIWRVEKFDLVPVPPNLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWLGNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESSTFSGYFKSGLKYKKGGVASGF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Motor protein
molecule keywords ACTIN-1
publication title Structural Differences Explain Diverse Functions of Plasmodium Actins.
pubmed doi rcsb
source organism Plasmodium falciparum
total genus 44
structure length 125
sequence length 125
ec nomenclature
pdb deposition date 2013-10-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
G PF00626 Gelsolin Gelsolin repeat
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 4cbuG00
3EGXA 2VACA 1NMDG 2VIKA 2LXXA 2NUTB 1D4XG 3CJBG 1QPVA 1T3YA 1M2VA 1SVRA 3EG9B 3EFOA 2QTVA 1YVNG 2NUPA 1SVYA 3A5OS 4PKIG 3A5LS 4PKHB 2MP4A 1VFQA 5KYXA 2FF6G 1T44G 1H1VG 5A1MA 3EGDB 3FFNA 1DEJS 1YAGG 1KCQA 1P8ZG 1Q8XA 4CBXG 5FAEA 1ESVS 1WM4A 5DD2A 3A5MS 2MOTA 2NUPB 2L72A 2XF1A 3DAWB 4KEFA 1TVJA 4PKGG 1AK7A 1NPHA 5FAFA 1WFSA 3TU5B 3EH2A 3EH1A 1WNJA 5KYUA 3L50A 1V6FA 5KYYA 5KYWB 1PD0A 1C0GS 1M2OA 3CIPG 1C0FS 3EGXB 1F7SA 4CBWG 1P8XA 2FH2A 4BEX1 1NM1G 3CI5G 1RGIG 1M2VB 1T2LA 3EFOB 1AHQA 1M4JA 1JHWA 1UDMA 5KYNA 4Z94G 4CBUG 2XFAA 2W0IA 1HQZ1 4KEEA 4LIZA 5KYXB 2FH3A 2NUTA 1SVQA 1T3XA 1D0NA 3EG9A 2MV2A 4JD2H 1NLVG 1CFYA 2I2QA 1EQYS 3FG7A 3Q2BA 2FH4A 5HVKB 1X67A 3EGDA 5KYUB 3FG6A 1VKKA 3FFKA 5KYYB 5L6WC 2FH1A 2FF3A 5IVUA 3CJCG 1COFA 2KVKA 1PCXA 1Q8GA 1MDUA 3A5NS 4KEDA 2HD7A 2LLFA 1CNUA 4S10C 5KYWA 2LJ8A 1J72A 1PD1A 2VILA 1AK6A 2FGHA 2D8BA 5HVKD 1TMWA
chains in the Genus database with same CATH superfamily
3EGXA 2VACA 1NMDG 2VIKA 2LXXA 2NUTB 1D4XG 3CJBG 1QPVA 1T3YA 1M2VA 1SVRA 3EG9B 3EFOA 2QTVA 1YVNG 2NUPA 1SVYA 3A5OS 4PKIG 3A5LS 4PKHB 2MP4A 1VFQA 5KYXA 2FF6G 1T44G 1H1VG 5A1MA 3EGDB 3FFNA 1DEJS 1YAGG 1KCQA 1P8ZG 1Q8XA 4CBXG 5FAEA 1ESVS 1WM4A 5DD2A 3A5MS 2MOTA 2NUPB 2L72A 2XF1A 3DAWB 4KEFA 1TVJA 4PKGG 1AK7A 1NPHA 5FAFA 1WFSA 3TU5B 3EH2A 3EH1A 1WNJA 5KYUA 3L50A 1V6FA 5KYYA 5KYWB 1PD0A 1C0GS 1M2OA 3CIPG 1C0FS 3EGXB 1F7SA 4CBWG 1P8XA 2FH2A 4BEX1 1NM1G 3CI5G 3DA7A 1RGIG 1M2VB 1T2LA 3EFOB 1AHQA 1M4JA 1JHWA 1UDMA 5KYNA 4Z94G 4CBUG 2XFAA 2W0IA 1HQZ1 4KEEA 4LIZA 5KYXB 2FH3A 2NUTA 1SVQA 1T3XA 1D0NA 3EG9A 2MV2A 4JD2H 1NLVG 1CFYA 2I2QA 1EQYS 3FG7A 3Q2BA 2FH4A 5HVKB 1X67A 3EGDA 5KYUB 3FG6A 1VKKA 3FFKA 5KYYB 5L6WC 2FH1A 2FF3A 5IVUA 3CJCG 1COFA 2KVKA 1PCXA 1Q8GA 1MDUA 3A5NS 4KEDA 2HD7A 2LLFA 1CNUA 4S10C 5KYWA 2LJ8A 1J72A 1PD1A 2VILA 1AK6A 2FGHA 2D8BA 5HVKD 1TMWA
chains in the Genus database with same CATH topology
3EGXA 2VACA 1NMDG 2VIKA 2LXXA 2NUTB 1D4XG 3CJBG 1QPVA 1T3YA 1M2VA 1SVRA 3EG9B 3EFOA 2QTVA 1YVNG 2NUPA 1SVYA 3A5OS 4PKIG 3A5LS 4PKHB 2MP4A 1VFQA 5KYXA 2FF6G 1T44G 1H1VG 5A1MA 3EGDB 3FFNA 1DEJS 1YAGG 1KCQA 1P8ZG 1Q8XA 4CBXG 5FAEA 1ESVS 1WM4A 5DD2A 3A5MS 2MOTA 2NUPB 2L72A 2XF1A 3DAWB 4KEFA 1TVJA 4PKGG 1AK7A 1NPHA 5FAFA 1WFSA 3TU5B 3EH2A 3EH1A 1WNJA 5KYUA 3L50A 1V6FA 5KYYA 5KYWB 1PD0A 1C0GS 1M2OA 3CIPG 1C0FS 3EGXB 1F7SA 4CBWG 1P8XA 2FH2A 4BEX1 1NM1G 3CI5G 3DA7A 1RGIG 1M2VB 1T2LA 3EFOB 1AHQA 1M4JA 1JHWA 1UDMA 5KYNA 4Z94G 4CBUG 2XFAA 2W0IA 1HQZ1 4KEEA 4LIZA 5KYXB 2FH3A 2NUTA 1SVQA 1T3XA 1D0NA 3EG9A 2MV2A 4JD2H 1NLVG 1CFYA 2I2QA 1EQYS 3FG7A 3Q2BA 2FH4A 5HVKB 1X67A 3EGDA 5KYUB 3FG6A 1VKKA 3FFKA 5KYYB 5L6WC 2FH1A 2FF3A 5IVUA 3CJCG 1COFA 2KVKA 1PCXA 1Q8GA 1MDUA 3A5NS 4KEDA 2HD7A 2LLFA 1CNUA 4S10C 5KYWA 2LJ8A 1J72A 1PD1A 2VILA 1AK6A 2FGHA 2D8BA 5HVKD 1TMWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3EGX A;  2VAC A;  1NMD G;  2VIK A;  2LXX A;  2NUT B;  1D4X G;  3CJB G;  1QPV A;  1T3Y A;  1M2V A;  1SVR A;  3EG9 B;  3EFO A;  2QTV A;  1YVN G;  2NUP A;  1SVY A;  3A5O S;  4PKI G;  3A5L S;  4PKH B;  2MP4 A;  1VFQ A;  5KYX A;  2FF6 G;  1T44 G;  1H1V G;  5A1M A;  3EGD B;  3FFN A;  1DEJ S;  1YAG G;  1KCQ A;  1P8Z G;  1Q8X A;  4CBX G;  5FAE A;  1ESV S;  1WM4 A;  5DD2 A;  3A5M S;  2MOT A;  2NUP B;  2L72 A;  2XF1 A;  3DAW B;  4KEF A;  1TVJ A;  4PKG G;  1AK7 A;  1NPH A;  5FAF A;  1WFS A;  3TU5 B;  3EH2 A;  3EH1 A;  1WNJ A;  5KYU A;  3L50 A;  1V6F A;  5KYY A;  5KYW B;  1PD0 A;  1C0G S;  1M2O A;  3CIP G;  1C0F S;  3EGX B;  1F7S A;  4CBW G;  1P8X A;  2FH2 A;  4BEX 1;  1NM1 G;  3CI5 G;  1RGI G;  1M2V B;  1T2L A;  3EFO B;  1AHQ A;  1M4J A;  1JHW A;  1UDM A;  5KYN A;  4Z94 G;  4CBU G;  2XFA A;  2W0I A;  1HQZ 1;  4KEE A;  4LIZ A;  5KYX B;  2FH3 A;  2NUT A;  1SVQ A;  1T3X A;  1D0N A;  3EG9 A;  2MV2 A;  4JD2 H;  1NLV G;  1CFY A;  2I2Q A;  1EQY S;  3FG7 A;  3Q2B A;  2FH4 A;  5HVK B;  1X67 A;  3EGD A;  5KYU B;  3FG6 A;  1VKK A;  3FFK A;  5KYY B;  5L6W C;  2FH1 A;  2FF3 A;  5IVU A;  3CJC G;  1COF A;  2KVK A;  1PCX A;  1Q8G A;  1MDU A;  3A5N S;  4KED A;  2HD7 A;  2LLF A;  1CNU A;  4S10 C;  5KYW A;  2LJ8 A;  1J72 A;  1PD1 A;  2VIL A;  1AK6 A;  2FGH A;  2D8B A;  5HVK D;  1TMW A; 
#chains in the Genus database with same CATH topology
 3EGX A;  2VAC A;  1NMD G;  2VIK A;  2LXX A;  2NUT B;  1D4X G;  3CJB G;  1QPV A;  1T3Y A;  1M2V A;  1SVR A;  3EG9 B;  3EFO A;  2QTV A;  1YVN G;  2NUP A;  1SVY A;  3A5O S;  4PKI G;  3A5L S;  4PKH B;  2MP4 A;  1VFQ A;  5KYX A;  2FF6 G;  1T44 G;  1H1V G;  5A1M A;  3EGD B;  3FFN A;  1DEJ S;  1YAG G;  1KCQ A;  1P8Z G;  1Q8X A;  4CBX G;  5FAE A;  1ESV S;  1WM4 A;  5DD2 A;  3A5M S;  2MOT A;  2NUP B;  2L72 A;  2XF1 A;  3DAW B;  4KEF A;  1TVJ A;  4PKG G;  1AK7 A;  1NPH A;  5FAF A;  1WFS A;  3TU5 B;  3EH2 A;  3EH1 A;  1WNJ A;  5KYU A;  3L50 A;  1V6F A;  5KYY A;  5KYW B;  1PD0 A;  1C0G S;  1M2O A;  3CIP G;  1C0F S;  3EGX B;  1F7S A;  4CBW G;  1P8X A;  2FH2 A;  4BEX 1;  1NM1 G;  3CI5 G;  3DA7 A;  1RGI G;  1M2V B;  1T2L A;  3EFO B;  1AHQ A;  1M4J A;  1JHW A;  1UDM A;  5KYN A;  4Z94 G;  4CBU G;  2XFA A;  2W0I A;  1HQZ 1;  4KEE A;  4LIZ A;  5KYX B;  2FH3 A;  2NUT A;  1SVQ A;  1T3X A;  1D0N A;  3EG9 A;  2MV2 A;  4JD2 H;  1NLV G;  1CFY A;  2I2Q A;  1EQY S;  3FG7 A;  3Q2B A;  2FH4 A;  5HVK B;  1X67 A;  3EGD A;  5KYU B;  3FG6 A;  1VKK A;  3FFK A;  5KYY B;  5L6W C;  2FH1 A;  2FF3 A;  5IVU A;  3CJC G;  1COF A;  2KVK A;  1PCX A;  1Q8G A;  1MDU A;  3A5N S;  4KED A;  2HD7 A;  2LLF A;  1CNU A;  4S10 C;  5KYW A;  2LJ8 A;  1J72 A;  1PD1 A;  2VIL A;  1AK6 A;  2FGH A;  2D8B A;  5HVK D;  1TMW A; 
#chains in the Genus database with same CATH homology
 3EGX A;  2VAC A;  1NMD G;  2VIK A;  2LXX A;  2NUT B;  1D4X G;  3CJB G;  1QPV A;  1T3Y A;  1M2V A;  1SVR A;  3EG9 B;  3EFO A;  2QTV A;  1YVN G;  2NUP A;  1SVY A;  3A5O S;  4PKI G;  3A5L S;  4PKH B;  2MP4 A;  1VFQ A;  5KYX A;  2FF6 G;  1T44 G;  1H1V G;  5A1M A;  3EGD B;  3FFN A;  1DEJ S;  1YAG G;  1KCQ A;  1P8Z G;  1Q8X A;  4CBX G;  5FAE A;  1ESV S;  1WM4 A;  5DD2 A;  3A5M S;  2MOT A;  2NUP B;  2L72 A;  2XF1 A;  3DAW B;  4KEF A;  1TVJ A;  4PKG G;  1AK7 A;  1NPH A;  5FAF A;  1WFS A;  3TU5 B;  3EH2 A;  3EH1 A;  1WNJ A;  5KYU A;  3L50 A;  1V6F A;  5KYY A;  5KYW B;  1PD0 A;  1C0G S;  1M2O A;  3CIP G;  1C0F S;  3EGX B;  1F7S A;  4CBW G;  1P8X A;  2FH2 A;  4BEX 1;  1NM1 G;  3CI5 G;  3DA7 A;  1RGI G;  1M2V B;  1T2L A;  3EFO B;  1AHQ A;  1M4J A;  1JHW A;  1UDM A;  5KYN A;  4Z94 G;  4CBU G;  2XFA A;  2W0I A;  1HQZ 1;  4KEE A;  4LIZ A;  5KYX B;  2FH3 A;  2NUT A;  1SVQ A;  1T3X A;  1D0N A;  3EG9 A;  2MV2 A;  4JD2 H;  1NLV G;  1CFY A;  2I2Q A;  1EQY S;  3FG7 A;  3Q2B A;  2FH4 A;  5HVK B;  1X67 A;  3EGD A;  5KYU B;  3FG6 A;  1VKK A;  3FFK A;  5KYY B;  5L6W C;  2FH1 A;  2FF3 A;  5IVU A;  3CJC G;  1COF A;  2KVK A;  1PCX A;  1Q8G A;  1MDU A;  3A5N S;  4KED A;  2HD7 A;  2LLF A;  1CNU A;  4S10 C;  5KYW A;  2LJ8 A;  1J72 A;  1PD1 A;  2VIL A;  1AK6 A;  2FGH A;  2D8B A;  5HVK D;  1TMW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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