4CNFA

Crystal structure of sulfolobus acidocaldarius trmj
Total Genus 47
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
47
Knots found
sequence length
157
structure length
155
Chain Sequence
MTIRLVIVEPEGAYNLGFIARLVKNFLIDEFYVVNPKADINEAIKFSAKGSEVIEKMMKITNNFDDAIRDVDLKIATSSIADGDLLRKSIRPIDLERLIKDKKVAFIFGRESVGLTREEIAKSDFLLFIPANPEYPVLNLSHAVGIVLYELWRNR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords SPOU RRNA METHYLASE
publication title Characterization of Two Homologous 2'-O-Methyltransferases Showing Different Specificities for Their tRNA Substrates.
pubmed doi rcsb
source organism Sulfolobus acidocaldarius
total genus 47
structure length 155
sequence length 157
chains with identical sequence B
other databases KnotProt 2.0: K +31
ec nomenclature ec 2.1.1.200: tRNA (cytidine(32)/uridine(32)-2'-O)-methyltransferase.
pdb deposition date 2014-01-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00588 SpoU_methylase SpoU rRNA Methylase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 4cnfA00
4JALA 3IEFA 4YPYA 1NXZA 2HA8A 1UALA 4YQDA 4YQ9A 1VHKA 4CNDA 3KNUA 4YQOA 4MCCA 2O3AA 4YVIA 4JAKA 4YQ5A 4IG6A 2QMMA 2YY8A 1GZ0A 1V6ZA 4CNGA 4YVJA 1VH0A 1UAJA 4YQ4A 3O7BA 4PZKA 3N4JA 5GMBA 4CNEA 3L8UA 1V2XA 4YQKA 1OY5A 1IPAA 1UAKA 1UAMA 4YQAA 4E8BA 3ONPA 4YQ8A 4YPXA 4X3MA 1K3RA 3KY7A 5GMCA 4MCBA 3OIIA 4YQQA 1P9PA 4YPWA 4YQPA 4MCDA 5D9FA 2Z0YA 3AIAA 3GYQA 3QUVA 4YQTA 3IC6A 4YVKA 3KTYA 1J85A 4RG1A 3AI9X 4YQBA 4YVGA 3KW2A 4YQCA 3E5YA 4KDZA 1X7OA 4YPZA 2I6DA 5CO4A 4YQ7A 4YQ2A 3BBEA 4J3CA 4YQIA 1TO0A 4YQ1A 3DCMX 4XBOA 2CX8A 4YQ6A 3OIJA 3NK7A 1NS5A 3BBHA 4YQ3A 4FAKA 4X3LA 4YQNA 2QWVA 4L69A 1X7PA 4YQ0A 4CNFA 3AXZA 3NK6A 1MXIA 2V3KA 3BBDA 1Z85A 4YQLA 4YVHA 2EGWA 1ZJRA 2V3JA 4YQSA 1VHYA 2EGVA 4H3ZA 4KGNA 4YQGA 4YQRA 3OINA 1O6DA 3N4KA 4H3YA 5FAIA 3ILKA 4YQJA 5GM8A
chains in the Genus database with same CATH superfamily
4JALA 3IEFA 4YPYA 1NXZA 2HA8A 1UALA 4YQDA 4YQ9A 1VHKA 4CNDA 3KNUA 4YQOA 4MCCA 2O3AA 4YVIA 4JAKA 4YQ5A 4IG6A 2QMMA 2YY8A 1GZ0A 1V6ZA 4CNGA 4YVJA 1VH0A 1UAJA 4YQ4A 3O7BA 4PZKA 3N4JA 5GMBA 4CNEA 3L8UA 1V2XA 4YQKA 4JWJA 1OY5A 1IPAA 1UAKA 1UAMA 4YQAA 4E8BA 3ONPA 4YQ8A 4YPXA 4X3MA 1K3RA 3KY7A 5GMCA 4MCBA 3OIIA 4YQQA 1P9PA 4YPWA 4YQPA 4MCDA 5D9FA 2Z0YA 3AIAA 3GYQA 3QUVA 4YQTA 3IC6A 4YVKA 3KTYA 1J85A 4RG1A 3AI9X 4YQBA 4YVGA 3KW2A 4YQCA 3E5YA 4KDZA 1X7OA 4YPZA 2I6DA 4FMWA 5CO4A 4YQ7A 4YQ2A 3BBEA 4J3CA 4YQIA 1TO0A 4YQ1A 3DCMX 4JWHA 4XBOA 2CX8A 4YQ6A 3OIJA 3NK7A 1NS5A 3BBHA 4YQ3A 4JWFA 4FAKA 4JWGA 4X3LA 4YQNA 2QWVA 4L69A 1X7PA 4YQ0A 4CNFA 3AXZA 3NK6A 1MXIA 2V3KA 3BBDA 1Z85A 4YQLA 4YVHA 2EGWA 1ZJRA 2V3JA 4YQSA 1VHYA 2EGVA 4H3ZA 4KGNA 4YQGA 4YQRA 3OINA 1O6DA 3N4KA 4H3YA 5FAIA 3ILKA 4YQJA 5GM8A
chains in the Genus database with same CATH topology
4JALA 3IEFA 4YPYA 1NXZA 2HA8A 1UALA 4YQDA 4YQ9A 1VHKA 4CNDA 3KNUA 4YQOA 4MCCA 2O3AA 4YVIA 4JAKA 4YQ5A 4IG6A 2QMMA 2YY8A 1GZ0A 1V6ZA 4CNGA 4YVJA 1VH0A 1UAJA 4YQ4A 3O7BA 4PZKA 3N4JA 5GMBA 4CNEA 3L8UA 1V2XA 4YQKA 4JWJA 1OY5A 1IPAA 1UAKA 1UAMA 4YQAA 4E8BA 3ONPA 4YQ8A 4YPXA 4X3MA 1K3RA 3KY7A 5GMCA 4MCBA 3OIIA 4YQQA 1P9PA 4YPWA 4YQPA 4MCDA 5D9FA 2Z0YA 3AIAA 3GYQA 3QUVA 4YQTA 3IC6A 4YVKA 3KTYA 1J85A 4RG1A 3AI9X 4YQBA 4YVGA 3KW2A 4YQCA 3E5YA 4KDZA 1X7OA 4YPZA 2I6DA 4FMWA 5CO4A 4YQ7A 4YQ2A 3BBEA 4J3CA 4YQIA 1TO0A 4YQ1A 3DCMX 4JWHA 4XBOA 2CX8A 4YQ6A 3OIJA 3NK7A 1NS5A 3BBHA 4YQ3A 4JWFA 4FAKA 4JWGA 4X3LA 4YQNA 2QWVA 4L69A 1X7PA 4YQ0A 4CNFA 3AXZA 3NK6A 1MXIA 2V3KA 3BBDA 1Z85A 4YQLA 4YVHA 2EGWA 1ZJRA 2V3JA 4YQSA 1VHYA 2EGVA 4H3ZA 4KGNA 4YQGA 4YQRA 3OINA 1O6DA 3N4KA 4H3YA 5FAIA 3ILKA 4YQJA 5GM8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4JAL A;  3IEF A;  4YPY A;  1NXZ A;  2HA8 A;  1UAL A;  4YQD A;  4YQ9 A;  1VHK A;  4CND A;  3KNU A;  4YQO A;  4MCC A;  2O3A A;  4YVI A;  4JAK A;  4YQ5 A;  4IG6 A;  2QMM A;  2YY8 A;  1GZ0 A;  1V6Z A;  4CNG A;  4YVJ A;  1VH0 A;  1UAJ A;  4YQ4 A;  3O7B A;  4PZK A;  3N4J A;  5GMB A;  4CNE A;  3L8U A;  1V2X A;  4YQK A;  1OY5 A;  1IPA A;  1UAK A;  1UAM A;  4YQA A;  4E8B A;  3ONP A;  4YQ8 A;  4YPX A;  4X3M A;  1K3R A;  3KY7 A;  5GMC A;  4MCB A;  3OII A;  4YQQ A;  1P9P A;  4YPW A;  4YQP A;  4MCD A;  5D9F A;  2Z0Y A;  3AIA A;  3GYQ A;  3QUV A;  4YQT A;  3IC6 A;  4YVK A;  3KTY A;  1J85 A;  4RG1 A;  3AI9 X;  4YQB A;  4YVG A;  3KW2 A;  4YQC A;  3E5Y A;  4KDZ A;  1X7O A;  4YPZ A;  2I6D A;  5CO4 A;  4YQ7 A;  4YQ2 A;  3BBE A;  4J3C A;  4YQI A;  1TO0 A;  4YQ1 A;  3DCM X;  4XBO A;  2CX8 A;  4YQ6 A;  3OIJ A;  3NK7 A;  1NS5 A;  3BBH A;  4YQ3 A;  4FAK A;  4X3L A;  4YQN A;  2QWV A;  4L69 A;  1X7P A;  4YQ0 A;  4CNF A;  3AXZ A;  3NK6 A;  1MXI A;  2V3K A;  3BBD A;  1Z85 A;  4YQL A;  4YVH A;  2EGW A;  1ZJR A;  2V3J A;  4YQS A;  1VHY A;  2EGV A;  4H3Z A;  4KGN A;  4YQG A;  4YQR A;  3OIN A;  1O6D A;  3N4K A;  4H3Y A;  5FAI A;  3ILK A;  4YQJ A;  5GM8 A; 
#chains in the Genus database with same CATH topology
 4JAL A;  3IEF A;  4YPY A;  1NXZ A;  2HA8 A;  1UAL A;  4YQD A;  4YQ9 A;  1VHK A;  4CND A;  3KNU A;  4YQO A;  4MCC A;  2O3A A;  4YVI A;  4JAK A;  4YQ5 A;  4IG6 A;  2QMM A;  2YY8 A;  1GZ0 A;  1V6Z A;  4CNG A;  4YVJ A;  1VH0 A;  1UAJ A;  4YQ4 A;  3O7B A;  4PZK A;  3N4J A;  5GMB A;  4CNE A;  3L8U A;  1V2X A;  4YQK A;  4JWJ A;  1OY5 A;  1IPA A;  1UAK A;  1UAM A;  4YQA A;  4E8B A;  3ONP A;  4YQ8 A;  4YPX A;  4X3M A;  1K3R A;  3KY7 A;  5GMC A;  4MCB A;  3OII A;  4YQQ A;  1P9P A;  4YPW A;  4YQP A;  4MCD A;  5D9F A;  2Z0Y A;  3AIA A;  3GYQ A;  3QUV A;  4YQT A;  3IC6 A;  4YVK A;  3KTY A;  1J85 A;  4RG1 A;  3AI9 X;  4YQB A;  4YVG A;  3KW2 A;  4YQC A;  3E5Y A;  4KDZ A;  1X7O A;  4YPZ A;  2I6D A;  4FMW A;  5CO4 A;  4YQ7 A;  4YQ2 A;  3BBE A;  4J3C A;  4YQI A;  1TO0 A;  4YQ1 A;  3DCM X;  4JWH A;  4XBO A;  2CX8 A;  4YQ6 A;  3OIJ A;  3NK7 A;  1NS5 A;  3BBH A;  4YQ3 A;  4JWF A;  4FAK A;  4JWG A;  4X3L A;  4YQN A;  2QWV A;  4L69 A;  1X7P A;  4YQ0 A;  4CNF A;  3AXZ A;  3NK6 A;  1MXI A;  2V3K A;  3BBD A;  1Z85 A;  4YQL A;  4YVH A;  2EGW A;  1ZJR A;  2V3J A;  4YQS A;  1VHY A;  2EGV A;  4H3Z A;  4KGN A;  4YQG A;  4YQR A;  3OIN A;  1O6D A;  3N4K A;  4H3Y A;  5FAI A;  3ILK A;  4YQJ A;  5GM8 A; 
#chains in the Genus database with same CATH homology
 4JAL A;  3IEF A;  4YPY A;  1NXZ A;  2HA8 A;  1UAL A;  4YQD A;  4YQ9 A;  1VHK A;  4CND A;  3KNU A;  4YQO A;  4MCC A;  2O3A A;  4YVI A;  4JAK A;  4YQ5 A;  4IG6 A;  2QMM A;  2YY8 A;  1GZ0 A;  1V6Z A;  4CNG A;  4YVJ A;  1VH0 A;  1UAJ A;  4YQ4 A;  3O7B A;  4PZK A;  3N4J A;  5GMB A;  4CNE A;  3L8U A;  1V2X A;  4YQK A;  4JWJ A;  1OY5 A;  1IPA A;  1UAK A;  1UAM A;  4YQA A;  4E8B A;  3ONP A;  4YQ8 A;  4YPX A;  4X3M A;  1K3R A;  3KY7 A;  5GMC A;  4MCB A;  3OII A;  4YQQ A;  1P9P A;  4YPW A;  4YQP A;  4MCD A;  5D9F A;  2Z0Y A;  3AIA A;  3GYQ A;  3QUV A;  4YQT A;  3IC6 A;  4YVK A;  3KTY A;  1J85 A;  4RG1 A;  3AI9 X;  4YQB A;  4YVG A;  3KW2 A;  4YQC A;  3E5Y A;  4KDZ A;  1X7O A;  4YPZ A;  2I6D A;  4FMW A;  5CO4 A;  4YQ7 A;  4YQ2 A;  3BBE A;  4J3C A;  4YQI A;  1TO0 A;  4YQ1 A;  3DCM X;  4JWH A;  4XBO A;  2CX8 A;  4YQ6 A;  3OIJ A;  3NK7 A;  1NS5 A;  3BBH A;  4YQ3 A;  4JWF A;  4FAK A;  4JWG A;  4X3L A;  4YQN A;  2QWV A;  4L69 A;  1X7P A;  4YQ0 A;  4CNF A;  3AXZ A;  3NK6 A;  1MXI A;  2V3K A;  3BBD A;  1Z85 A;  4YQL A;  4YVH A;  2EGW A;  1ZJR A;  2V3J A;  4YQS A;  1VHY A;  2EGV A;  4H3Z A;  4KGN A;  4YQG A;  4YQR A;  3OIN A;  1O6D A;  3N4K A;  4H3Y A;  5FAI A;  3ILK A;  4YQJ A;  5GM8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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