4CNGA

Crystal structure of sulfolobus acidocaldarius trmj in complex with s-adenosyl-l-homocysteine
Total Genus 51
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
51
Knots found
sequence length
156
structure length
156
Chain Sequence
MTIRLVIVEPEGAYNLGFIARLVKNFLIDEFYVVNPKADINEAIKFSAKGSEVIEKMMKITNNFDDAIRDVDLKIATSSIADIKGDLLRKSIRPIDLERLIKDKKVAFIFGRESVGLTREEIAKSDFLLFIPANPEYPVLNLSHAVGIVLYELWRN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords SPOU RRNA METHYLASE
publication title Characterization of Two Homologous 2'-O-Methyltransferases Showing Different Specificities for Their tRNA Substrates.
pubmed doi rcsb
source organism Sulfolobus acidocaldarius
total genus 51
structure length 156
sequence length 156
chains with identical sequence B
other databases KnotProt 2.0: K +31
ec nomenclature ec 2.1.1.200: tRNA (cytidine(32)/uridine(32)-2'-O)-methyltransferase.
pdb deposition date 2014-01-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00588 SpoU_methylase SpoU rRNA Methylase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 4cngA00
1OY5A 4H3ZA 2V3JA 3OINA 1P9PA 2QWVA 4PZKA 4YQ0A 3E5YA 1O6DA 4YQ9A 4RG1A 4YQDA 4KDZA 4YVGA 4H3YA 3L8UA 1X7PA 3BBEA 2O3AA 3N4JA 1ZJRA 3AIAA 4YQTA 2I6DA 3IC6A 1UAMA 3ONPA 3AI9X 4J3CA 4X3MA 3QUVA 5GMCA 2HA8A 4YVHA 4YPYA 4YQOA 4YQ6A 4FAKA 4YQGA 3KW2A 1VH0A 3DCMX 4YQIA 4YQCA 5CO4A 4CNEA 4XBOA 3BBDA 1V2XA 5FAIA 3IEFA 2Z0YA 3ILKA 4YPWA 1J85A 2YY8A 1UAJA 1GZ0A 5D9FA 4YQ7A 4CNDA 4YPXA 4YPZA 3NK6A 4YQ8A 4CNGA 4YQ1A 2V3KA 4MCBA 4YQRA 4YQ3A 3BBHA 2CX8A 3KTYA 4YQPA 4YQ5A 4YQNA 1V6ZA 3NK7A 3KNUA 4YQQA 1K3RA 1VHYA 4YQ4A 2EGVA 4L69A 1NS5A 4CNFA 3OIIA 4KGNA 4MCCA 1IPAA 1TO0A 4YQ2A 3KY7A 4MCDA 1VHKA 1MXIA 3N4KA 4YQSA 4YQBA 4X3LA 5GMBA 4YQLA 5GM8A 1UAKA 4YVKA 4IG6A 4E8BA 2EGWA 4YQKA 4JALA 4YVIA 3OIJA 3AXZA 1UALA 3O7BA 2QMMA 4YQJA 4YQAA 1Z85A 1NXZA 4YVJA 4JAKA 1X7OA 3GYQA
chains in the Genus database with same CATH superfamily
1OY5A 4H3ZA 2V3JA 3OINA 1P9PA 2QWVA 4PZKA 4YQ0A 3E5YA 1O6DA 4YQ9A 4RG1A 4YQDA 4KDZA 4YVGA 4H3YA 3L8UA 1X7PA 4JWHA 3BBEA 2O3AA 3N4JA 1ZJRA 3AIAA 4YQTA 2I6DA 3IC6A 1UAMA 4FMWA 3ONPA 3AI9X 4J3CA 4X3MA 3QUVA 5GMCA 2HA8A 4YVHA 4YPYA 4YQOA 4YQ6A 4JWJA 4FAKA 4YQGA 3KW2A 1VH0A 3DCMX 4YQIA 4YQCA 5CO4A 4CNEA 4XBOA 3BBDA 1V2XA 5FAIA 3IEFA 2Z0YA 4JWGA 3ILKA 4YPWA 1J85A 2YY8A 1UAJA 1GZ0A 5D9FA 4YQ7A 4CNDA 4YPXA 4YPZA 3NK6A 4YQ8A 4CNGA 4YQ1A 2V3KA 4MCBA 4YQRA 4YQ3A 3BBHA 2CX8A 3KTYA 4YQPA 4YQ5A 4YQNA 1V6ZA 3NK7A 3KNUA 4YQQA 1K3RA 1VHYA 4YQ4A 2EGVA 4L69A 1NS5A 4CNFA 3OIIA 4KGNA 4MCCA 1IPAA 1TO0A 4YQ2A 3KY7A 4MCDA 1VHKA 1MXIA 3N4KA 4YQSA 4YQBA 4X3LA 5GMBA 4YQLA 5GM8A 1UAKA 4YVKA 4IG6A 4JWFA 4E8BA 2EGWA 4YQKA 4JALA 4YVIA 3OIJA 3AXZA 1UALA 3O7BA 2QMMA 4YQJA 4YQAA 1Z85A 1NXZA 4YVJA 4JAKA 1X7OA 3GYQA
chains in the Genus database with same CATH topology
1OY5A 4H3ZA 2V3JA 3OINA 1P9PA 2QWVA 4PZKA 4YQ0A 3E5YA 1O6DA 4YQ9A 4RG1A 4YQDA 4KDZA 4YVGA 4H3YA 3L8UA 1X7PA 4JWHA 3BBEA 2O3AA 3N4JA 1ZJRA 3AIAA 4YQTA 2I6DA 3IC6A 1UAMA 4FMWA 3ONPA 3AI9X 4J3CA 4X3MA 3QUVA 5GMCA 2HA8A 4YVHA 4YPYA 4YQOA 4YQ6A 4JWJA 4FAKA 4YQGA 3KW2A 1VH0A 3DCMX 4YQIA 4YQCA 5CO4A 4CNEA 4XBOA 3BBDA 1V2XA 5FAIA 3IEFA 2Z0YA 4JWGA 3ILKA 4YPWA 1J85A 2YY8A 1UAJA 1GZ0A 5D9FA 4YQ7A 4CNDA 4YPXA 4YPZA 3NK6A 4YQ8A 4CNGA 4YQ1A 2V3KA 4MCBA 4YQRA 4YQ3A 3BBHA 2CX8A 3KTYA 4YQPA 4YQ5A 4YQNA 1V6ZA 3NK7A 3KNUA 4YQQA 1K3RA 1VHYA 4YQ4A 2EGVA 4L69A 1NS5A 4CNFA 3OIIA 4KGNA 4MCCA 1IPAA 1TO0A 4YQ2A 3KY7A 4MCDA 1VHKA 1MXIA 3N4KA 4YQSA 4YQBA 4X3LA 5GMBA 4YQLA 5GM8A 1UAKA 4YVKA 4IG6A 4JWFA 4E8BA 2EGWA 4YQKA 4JALA 4YVIA 3OIJA 3AXZA 1UALA 3O7BA 2QMMA 4YQJA 4YQAA 1Z85A 1NXZA 4YVJA 4JAKA 1X7OA 3GYQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1OY5 A;  4H3Z A;  2V3J A;  3OIN A;  1P9P A;  2QWV A;  4PZK A;  4YQ0 A;  3E5Y A;  1O6D A;  4YQ9 A;  4RG1 A;  4YQD A;  4KDZ A;  4YVG A;  4H3Y A;  3L8U A;  1X7P A;  3BBE A;  2O3A A;  3N4J A;  1ZJR A;  3AIA A;  4YQT A;  2I6D A;  3IC6 A;  1UAM A;  3ONP A;  3AI9 X;  4J3C A;  4X3M A;  3QUV A;  5GMC A;  2HA8 A;  4YVH A;  4YPY A;  4YQO A;  4YQ6 A;  4FAK A;  4YQG A;  3KW2 A;  1VH0 A;  3DCM X;  4YQI A;  4YQC A;  5CO4 A;  4CNE A;  4XBO A;  3BBD A;  1V2X A;  5FAI A;  3IEF A;  2Z0Y A;  3ILK A;  4YPW A;  1J85 A;  2YY8 A;  1UAJ A;  1GZ0 A;  5D9F A;  4YQ7 A;  4CND A;  4YPX A;  4YPZ A;  3NK6 A;  4YQ8 A;  4CNG A;  4YQ1 A;  2V3K A;  4MCB A;  4YQR A;  4YQ3 A;  3BBH A;  2CX8 A;  3KTY A;  4YQP A;  4YQ5 A;  4YQN A;  1V6Z A;  3NK7 A;  3KNU A;  4YQQ A;  1K3R A;  1VHY A;  4YQ4 A;  2EGV A;  4L69 A;  1NS5 A;  4CNF A;  3OII A;  4KGN A;  4MCC A;  1IPA A;  1TO0 A;  4YQ2 A;  3KY7 A;  4MCD A;  1VHK A;  1MXI A;  3N4K A;  4YQS A;  4YQB A;  4X3L A;  5GMB A;  4YQL A;  5GM8 A;  1UAK A;  4YVK A;  4IG6 A;  4E8B A;  2EGW A;  4YQK A;  4JAL A;  4YVI A;  3OIJ A;  3AXZ A;  1UAL A;  3O7B A;  2QMM A;  4YQJ A;  4YQA A;  1Z85 A;  1NXZ A;  4YVJ A;  4JAK A;  1X7O A;  3GYQ A; 
#chains in the Genus database with same CATH topology
 1OY5 A;  4H3Z A;  2V3J A;  3OIN A;  1P9P A;  2QWV A;  4PZK A;  4YQ0 A;  3E5Y A;  1O6D A;  4YQ9 A;  4RG1 A;  4YQD A;  4KDZ A;  4YVG A;  4H3Y A;  3L8U A;  1X7P A;  4JWH A;  3BBE A;  2O3A A;  3N4J A;  1ZJR A;  3AIA A;  4YQT A;  2I6D A;  3IC6 A;  1UAM A;  4FMW A;  3ONP A;  3AI9 X;  4J3C A;  4X3M A;  3QUV A;  5GMC A;  2HA8 A;  4YVH A;  4YPY A;  4YQO A;  4YQ6 A;  4JWJ A;  4FAK A;  4YQG A;  3KW2 A;  1VH0 A;  3DCM X;  4YQI A;  4YQC A;  5CO4 A;  4CNE A;  4XBO A;  3BBD A;  1V2X A;  5FAI A;  3IEF A;  2Z0Y A;  4JWG A;  3ILK A;  4YPW A;  1J85 A;  2YY8 A;  1UAJ A;  1GZ0 A;  5D9F A;  4YQ7 A;  4CND A;  4YPX A;  4YPZ A;  3NK6 A;  4YQ8 A;  4CNG A;  4YQ1 A;  2V3K A;  4MCB A;  4YQR A;  4YQ3 A;  3BBH A;  2CX8 A;  3KTY A;  4YQP A;  4YQ5 A;  4YQN A;  1V6Z A;  3NK7 A;  3KNU A;  4YQQ A;  1K3R A;  1VHY A;  4YQ4 A;  2EGV A;  4L69 A;  1NS5 A;  4CNF A;  3OII A;  4KGN A;  4MCC A;  1IPA A;  1TO0 A;  4YQ2 A;  3KY7 A;  4MCD A;  1VHK A;  1MXI A;  3N4K A;  4YQS A;  4YQB A;  4X3L A;  5GMB A;  4YQL A;  5GM8 A;  1UAK A;  4YVK A;  4IG6 A;  4JWF A;  4E8B A;  2EGW A;  4YQK A;  4JAL A;  4YVI A;  3OIJ A;  3AXZ A;  1UAL A;  3O7B A;  2QMM A;  4YQJ A;  4YQA A;  1Z85 A;  1NXZ A;  4YVJ A;  4JAK A;  1X7O A;  3GYQ A; 
#chains in the Genus database with same CATH homology
 1OY5 A;  4H3Z A;  2V3J A;  3OIN A;  1P9P A;  2QWV A;  4PZK A;  4YQ0 A;  3E5Y A;  1O6D A;  4YQ9 A;  4RG1 A;  4YQD A;  4KDZ A;  4YVG A;  4H3Y A;  3L8U A;  1X7P A;  4JWH A;  3BBE A;  2O3A A;  3N4J A;  1ZJR A;  3AIA A;  4YQT A;  2I6D A;  3IC6 A;  1UAM A;  4FMW A;  3ONP A;  3AI9 X;  4J3C A;  4X3M A;  3QUV A;  5GMC A;  2HA8 A;  4YVH A;  4YPY A;  4YQO A;  4YQ6 A;  4JWJ A;  4FAK A;  4YQG A;  3KW2 A;  1VH0 A;  3DCM X;  4YQI A;  4YQC A;  5CO4 A;  4CNE A;  4XBO A;  3BBD A;  1V2X A;  5FAI A;  3IEF A;  2Z0Y A;  4JWG A;  3ILK A;  4YPW A;  1J85 A;  2YY8 A;  1UAJ A;  1GZ0 A;  5D9F A;  4YQ7 A;  4CND A;  4YPX A;  4YPZ A;  3NK6 A;  4YQ8 A;  4CNG A;  4YQ1 A;  2V3K A;  4MCB A;  4YQR A;  4YQ3 A;  3BBH A;  2CX8 A;  3KTY A;  4YQP A;  4YQ5 A;  4YQN A;  1V6Z A;  3NK7 A;  3KNU A;  4YQQ A;  1K3R A;  1VHY A;  4YQ4 A;  2EGV A;  4L69 A;  1NS5 A;  4CNF A;  3OII A;  4KGN A;  4MCC A;  1IPA A;  1TO0 A;  4YQ2 A;  3KY7 A;  4MCD A;  1VHK A;  1MXI A;  3N4K A;  4YQS A;  4YQB A;  4X3L A;  5GMB A;  4YQL A;  5GM8 A;  1UAK A;  4YVK A;  4IG6 A;  4JWF A;  4E8B A;  2EGW A;  4YQK A;  4JAL A;  4YVI A;  3OIJ A;  3AXZ A;  1UAL A;  3O7B A;  2QMM A;  4YQJ A;  4YQA A;  1Z85 A;  1NXZ A;  4YVJ A;  4JAK A;  1X7O A;  3GYQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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