4DCZA

Crystal structure of a domain from a mycoplasma genitalium terminal organelle protein
Total Genus 9
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
9
sequence length
55
structure length
55
Chain Sequence
QNKDPDELRSKVPGEVTASDWEALVGDTRYGYFDETGDWSWKGYFDEQGKWVWNE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Unknown function
molecule keywords DnaJ-like protein MG200
publication title The EAGR box structure: a motif involved in mycoplasma motility.
pubmed doi rcsb
source organism Mycoplasma genitalium
total genus 9
structure length 55
sequence length 55
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-01-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF16713 EAGR_box Enriched in aromatic and glycine Residues box
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1660.50 Mainly Alpha Orthogonal Bundle Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 4dczA00
4DCZA
chains in the Genus database with same CATH superfamily
4WLWA 1Q0AA 1RH6A 3D71A 3Q2YA 1Y6UA 3EZ9A 4DCZA 1Q09A 3Q5SA 3GP4A 2IEFA 5D90A 1R8DA 1Q07A 1EXJA 4J2NA 4LHFA 4WLSA 2JMLA 5E01A 1Q08A 5I44A 2ZHGA 2VZ4A 2KVVA 5D8CA 1PM6A 1Q06A 3EZFA 3Q5PA 3Q5RA 4R4EA 1R8EA 1JBGA 3GPVA 3QAOA 3Q3DA 2OG0A 3Q1MA 3HH0A 3UCSA 1Q05A 3EZ2A 2DG6A 1EXIA 3D6ZA 3D70A 1LX8A 3IAOA 3EZ7A 4R22B 3D6YA 3EZ6A 5I41B 2ZHHA 4R24B
chains in the Genus database with same CATH topology
4WLWA 1Q0AA 1RH6A 3D71A 3Q2YA 1Y6UA 3EZ9A 4DCZA 1Q09A 3Q5SA 3GP4A 2IEFA 5D90A 1R8DA 1Q07A 1EXJA 4J2NA 4LHFA 4WLSA 2JMLA 5E01A 1Q08A 5I44A 2ZHGA 2VZ4A 2KVVA 5D8CA 1PM6A 1Q06A 3EZFA 3Q5PA 3Q5RA 4R4EA 1R8EA 1JBGA 3GPVA 3QAOA 3Q3DA 2OG0A 3Q1MA 3HH0A 3UCSA 1Q05A 3EZ2A 2DG6A 1EXIA 3D6ZA 3D70A 1LX8A 3IAOA 3EZ7A 4R22B 3D6YA 3EZ6A 5I41B 2ZHHA 4R24B
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4DCZ A; 
#chains in the Genus database with same CATH topology
 4WLW A;  1Q0A A;  1RH6 A;  3D71 A;  3Q2Y A;  1Y6U A;  3EZ9 A;  4DCZ A;  1Q09 A;  3Q5S A;  3GP4 A;  2IEF A;  5D90 A;  1R8D A;  1Q07 A;  1EXJ A;  4J2N A;  4LHF A;  4WLS A;  2JML A;  5E01 A;  1Q08 A;  5I44 A;  2ZHG A;  2VZ4 A;  2KVV A;  5D8C A;  1PM6 A;  1Q06 A;  3EZF A;  3Q5P A;  3Q5R A;  4R4E A;  1R8E A;  1JBG A;  3GPV A;  3QAO A;  3Q3D A;  2OG0 A;  3Q1M A;  3HH0 A;  3UCS A;  1Q05 A;  3EZ2 A;  2DG6 A;  1EXI A;  3D6Z A;  3D70 A;  1LX8 A;  3IAO A;  3EZ7 A;  4R22 B;  3D6Y A;  3EZ6 A;  5I41 B;  2ZHH A;  4R24 B; 
#chains in the Genus database with same CATH homology
 4WLW A;  1Q0A A;  1RH6 A;  3D71 A;  3Q2Y A;  1Y6U A;  3EZ9 A;  4DCZ A;  1Q09 A;  3Q5S A;  3GP4 A;  2IEF A;  5D90 A;  1R8D A;  1Q07 A;  1EXJ A;  4J2N A;  4LHF A;  4WLS A;  2JML A;  5E01 A;  1Q08 A;  5I44 A;  2ZHG A;  2VZ4 A;  2KVV A;  5D8C A;  1PM6 A;  1Q06 A;  3EZF A;  3Q5P A;  3Q5R A;  4R4E A;  1R8E A;  1JBG A;  3GPV A;  3QAO A;  3Q3D A;  2OG0 A;  3Q1M A;  3HH0 A;  3UCS A;  1Q05 A;  3EZ2 A;  2DG6 A;  1EXI A;  3D6Z A;  3D70 A;  1LX8 A;  3IAO A;  3EZ7 A;  4R22 B;  3D6Y A;  3EZ6 A;  5I41 B;  2ZHH A;  4R24 B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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