4DFCB

Core uvra/trcf complex
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
123
structure length
121
Chain Sequence
MASTVSQMVDNVLSQPEGKRLMLLAPIIKERKGEHTKTLENLASQGYIRARIDGEVCDLSDPPKLELQKKHTIEVVVDRFKVRLTQRLAESFETALELSGGTAVVADMDDPKAEELLFSAN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase/dna binding protein
molecule keywords Transcription-repair-coupling factor
publication title Nucleotide excision repair (NER) machinery recruitment by the transcription-repair coupling factor involves unmasking of a conserved intramolecular interface.
pubmed doi rcsb
source organism Escherichia coli
total genus 26
structure length 121
sequence length 123
chains with identical sequence D
ec nomenclature ec 3.6.1.3: Adenosinetriphosphatase.
pdb deposition date 2012-01-23
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.190.20 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase 4dfcB00
4F9TA 1MZPA 1ZHOA 3FPNA 3QOYA 2HW8A 1DWUA 3U4MA 1AD2A 4LQ4A 5DM60 3UMYA 4QGBA 4QG3A 1U63A 3ZQJA 4DFCB 4REOA 4QVIA 3TG8A 1I2AA 1CJSA 5DM70 3U56A
chains in the Genus database with same CATH superfamily
1RLDS 1IR1S 4F9TA 2YBVB 1RBLI 1RXOC 2V63I 8RUCI 1MZPA 1UZHC 2VDHI 1UZDC 3AXMS 4F0HB 1ZHOA 4RUBS 4F0MB 2VDII 3FPNA 3QOYA 1UPMC 2DFXI 1SVDM 4MKVS 3ZXWB 2HW8A 5DM70 1GK8I 3AXKS 3RUBS 3UMYA 1BWVS 4F0KB 1DWUA 1RCXC 1UW9C 3U4MA 1EJ7S 1AD2A 1RCOC 1IR21 2V68I 4LQ4A 1UWAC 5DM60 1WDDS 2V67I 4QGBA 4QG3A 1RBOC 4HHHS 1IWAB 1RLCS 3ZQJA 1U63A 4DFCB 1UPPI 4REOA 4QVIA 3TG8A 1I2AA 1CJSA 1RSCI 2FHZA 2V69I 1AA1C 2V6AI 1BXNI 1AUSS 3U56A
chains in the Genus database with same CATH topology
4F9TA 1MZPA 1ZHOA 3FPNA 3QOYA 2DFXI 2HW8A 1DWUA 3U4MA 1AD2A 4LQ4A 5DM60 3UMYA 4QGBA 4QG3A 1U63A 3ZQJA 4DFCB 4REOA 4QVIA 3TG8A 1I2AA 1CJSA 2FHZA 5DM70 3U56A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4F9T A;  1MZP A;  1ZHO A;  3FPN A;  3QOY A;  2HW8 A;  1DWU A;  3U4M A;  1AD2 A;  4LQ4 A;  5DM6 0;  3UMY A;  4QGB A;  4QG3 A;  1U63 A;  3ZQJ A;  4DFC B;  4REO A;  4QVI A;  3TG8 A;  1I2A A;  1CJS A;  5DM7 0;  3U56 A; 
#chains in the Genus database with same CATH topology
 1RLD S;  1IR1 S;  4F9T A;  2YBV B;  1RBL I;  1RXO C;  2V63 I;  8RUC I;  1MZP A;  1UZH C;  2VDH I;  1UZD C;  3AXM S;  4F0H B;  1ZHO A;  4RUB S;  4F0M B;  2VDI I;  3FPN A;  3QOY A;  1UPM C;  2DFX I;  1SVD M;  4MKV S;  3ZXW B;  2HW8 A;  5DM7 0;  1GK8 I;  3AXK S;  3RUB S;  3UMY A;  1BWV S;  4F0K B;  1DWU A;  1RCX C;  1UW9 C;  3U4M A;  1EJ7 S;  1AD2 A;  1RCO C;  1IR2 1;  2V68 I;  4LQ4 A;  1UWA C;  5DM6 0;  1WDD S;  2V67 I;  4QGB A;  4QG3 A;  1RBO C;  4HHH S;  1IWA B;  1RLC S;  3ZQJ A;  1U63 A;  4DFC B;  1UPP I;  4REO A;  4QVI A;  3TG8 A;  1I2A A;  1CJS A;  1RSC I;  2FHZ A;  2V69 I;  1AA1 C;  2V6A I;  1BXN I;  1AUS S;  3U56 A; 
#chains in the Genus database with same CATH homology
 4F9T A;  1MZP A;  1ZHO A;  3FPN A;  3QOY A;  2DFX I;  2HW8 A;  1DWU A;  3U4M A;  1AD2 A;  4LQ4 A;  5DM6 0;  3UMY A;  4QGB A;  4QG3 A;  1U63 A;  3ZQJ A;  4DFC B;  4REO A;  4QVI A;  3TG8 A;  1I2A A;  1CJS A;  2FHZ A;  5DM7 0;  3U56 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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