4E1RA

Crystal structure of the dimerization domain of lsr2 from mycobacterium tuberculosis in the p 31 2 1 space group
Total Genus 11
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
11
sequence length
55
structure length
55
Chain Sequence
KVTVTLVDDFDGSGAADETVEFGLDGVTYEIDLSTKNATKLRGDLKQWVAAGRRV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Dna binding protein
molecule keywords Protein lsr2
publication title The structure of the oligomerization domain of Lsr2 from Mycobacterium tuberculosis reveals a mechanism for chromosome organization and protection.
pubmed doi rcsb
source organism Mycobacterium tuberculosis
total genus 11
structure length 55
sequence length 55
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-03-06
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.230 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Wheat Germ Agglutinin (Isolectin 2); domain 1 4e1rA00
4E1PA 4E1RA
chains in the Genus database with same CATH superfamily
1NXUA 3UGLA 2KMOA 4UXJA 3BJIA 5J8FA 1FYBA 1CT4I 4MPIA 5E3QA 2OZUA 1SGNI 3SGQI 2QQDA 4WP4A 1UVFA 2A20A 3R5AA 1HEVA 1X4SA 3OL0A 1XX6A 1TBRR 3E59A 1M8CA 1W3SA 2K9HA 1XBTA 3UEYA 1OYVI 1TGSI 3TOBA 1TBOA 2OVOA 3VDPA 2NU2I 2WCYA 3R5BA 1CGJI 3OVOA 1MJ9A 1SGQI 1PJUA 2WGCA 1AN1I 1DS3I 4L9MA 1CT0I 2V53A 2DKVA 2LB7A 5EX3A 1SGDI 1TBNA 1WTJA 1LR9A 2ARPF 2UZ3A 2L8EA 4SGBI 2V1CA 2N71A 2E73A 1K7VA 9WGAA 1R79A 5HQ8A 3OXLA 1IW4A 1MJAA 1H0ZA 2SGQI 3UOEA 2XRCA 3TJQA 1HJAI 5E3PA 1Y1BA 1TBQR 1Y1CA 2ROWA 1SGPI 2NU4I 1Z7KB 1M8BA 5FUWA 5J8CA 2E5RA 5E3RA 1PPFI 2X3TA 3CXLA 4E1RA 1BMOA 2DB6A 1CT2I 2YUUA 1Y8FA 2RC4A 2RIJA 2GIVA 2SGDI 3MEKA 1DS2I 1IY5A 2FNFX 1K7TA 2CWFA 3UFFA 1WGTA 3VDUA 2GKVA 1NUBA 2M5XA 3UGDA 1MT1A 2CJSC 1IY6A 1N13A 1LR7A 1FARA 2J9RA 2QQEA 2WVJA 2QQ0A 3SGBI 4B6DA 2LEOA 5FUYA 3SEKC 1V1HA 1KMAA 4FKDA 2JA1A 1ULNA 1P9ZA 1OMUA 2JZMA 2GKTI 2YQPA 2CWGA 2JW6A 3UEJA 1V1IA 2SGEI 2J87A 2JXDA 2SGPI 2V1CC 5CCMA 1KBFA 2LUYA 2W0TA 4UXIA 1KBEA 3OXFA 1UVGA 5FUXA 1U5KA 3E2IA 1WKXA 4HGUA 1FY7A 4JCVE 3PDNA 2BUSA 1FAQA 5CCLA 2NU1I 3FSYA 2P6AC 3TO6A 4E1PA 1ULMA 4DNCA 3OXGA 4A24A 1ULKA 2B0UC 3UGIA 3D00A 3B4VC 2KMRA 2N52A 1YU6C 2ENNA 1R0RI 1TURA 2F3CI 2CWHA 2L7XA 2PQ8A 1VDDA 1TUSA 2SGFI 5JHWC 1OVOA 2OD1A 3GOXA 1CE3A 3FSXA 4UXHA 1MJBA 3TO9A 1PCEA 1SGYI 3R5CA 2UVOA 2N17A 1RFHA 1SGEI 1Z2IA 4OVOA 1OMTA 3QWPA 2KMQA 3KY9A 2GKRI 2ORWA 2VRWB 1CSOI 1CGII 2JYYA 4GI3C 2Y0MA 5DAEA 2B8TA 3VE5A 1CHOI 2OU2A 5EX0A 1HPTA 1PTQA 2KCXA 1X74A 2N1AB 2ERWA 2QPOA 3TOAA 3QTLD 4AMLA 2ODDA 2X52A 1Q9BA 5FUVA 1S20A 1YTPA 7WGAA 1LR8A 2ENZA 2KMPA 1XA6A 2ELIA 3HH2C 3FC3A 1P9GA 1UUCA 1TIHA 1PTRA 1HDLA 1TOTA 1BUSA 2DIPA 5HI7A 3R5DA 3TO7A 1W4RA 2NU3I 2ORVA 2GVIA 3QAHA 3RU0A 1UHAA 2NU0I 1SGRI 1WGCA 2QQCA 1K7UA
chains in the Genus database with same CATH topology
3UGLA 2KMOA 4UXJA 3BJIA 1FYBA 1CT4I 1SGNI 3SGQI 2QQDA 1UVFA 2A20A 1X4SA 3OL0A 1XX6A 1TBRR 3E59A 1M8CA 1W3SA 2K9HA 1XBTA 3UEYA 1OYVI 1TGSI 1TBOA 2OVOA 3VDPA 2NU2I 2WCYA 1CGJI 3OVOA 1SGQI 1PJUA 1AN1I 1DS3I 4L9MA 1CT0I 2V53A 5EX3A 1SGDI 1TBNA 2UZ3A 1LR9A 2ARPF 1H0ZA 2L8EA 4SGBI 2V1CA 2N71A 2E73A 1R79A 5HQ8A 3OXLA 1IW4A 2SGQI 2XRCA 3TJQA 1HJAI 1Y1BA 1TBQR 1Y1CA 2ROWA 1SGPI 2NU4I 1Z7KB 1M8BA 5FUWA 2E5RA 1PPFI 3CXLA 4E1RA 1BMOA 2DB6A 1CT2I 2YUUA 1Y8FA 2SGDI 3MEKA 1DS2I 1IY5A 2FNFX 3UFFA 3VDUA 2GKVA 1NUBA 2M5XA 3UGDA 1MT1A 2CJSC 1IY6A 1N13A 1LR7A 1FARA 2J9RA 2QQEA 2WVJA 2QQ0A 3SGBI 4B6DA 2LEOA 5FUYA 3SEKC 1V1HA 1KMAA 4FKDA 2JA1A 1OMUA 2JZMA 2GKTI 2YQPA 2JW6A 3UEJA 1V1IA 2J87A 2JXDA 2SGPI 2V1CC 5CCMA 1KBFA 2LUYA 2W0TA 4UXIA 1KBEA 3OXFA 1UVGA 5FUXA 1U5KA 3E2IA 4HGUA 4JCVE 3PDNA 2BUSA 1FAQA 5CCLA 2NU1I 2P6AC 4E1PA 3OXGA 4A24A 2B0UC 3UGIA 3D00A 3B4VC 2KMRA 2N52A 1YU6C 2ENNA 1R0RI 1TURA 2F3CI 2L7XA 2SGFI 1VDDA 1TUSA 5JHWC 1OVOA 2OD1A 3GOXA 1CE3A 4UXHA 1PCEA 1SGYI 2N17A 1RFHA 1SGEI 4OVOA 1OMTA 3QWPA 2KMQA 3KY9A 2GKRI 2ORWA 2VRWB 1CSOI 1CGII 2JYYA 4GI3C 5DAEA 3VE5A 2B8TA 1CHOI 5EX0A 1HPTA 1PTQA 2KCXA 1X74A 2N1AB 2ERWA 2QPOA 3QTLD 2ODDA 5FUVA 1YTPA 3FC3A 1LR8A 2ENZA 2KMPA 1XA6A 2ELIA 3HH2C 1UUCA 1TIHA 1PTRA 1HDLA 1TOTA 1BUSA 2DIPA 5HI7A 1W4RA 2NU3I 2ORVA 2GVIA 3RU0A 2NU0I 1SGRI 2QQCA 2SGEI
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4E1P A;  4E1R A; 
#chains in the Genus database with same CATH topology
 1NXU A;  3UGL A;  2KMO A;  4UXJ A;  3BJI A;  5J8F A;  1FYB A;  1CT4 I;  4MPI A;  5E3Q A;  2OZU A;  1SGN I;  3SGQ I;  2QQD A;  4WP4 A;  1UVF A;  2A20 A;  3R5A A;  1HEV A;  1X4S A;  3OL0 A;  1XX6 A;  1TBR R;  3E59 A;  1M8C A;  1W3S A;  2K9H A;  1XBT A;  3UEY A;  1OYV I;  1TGS I;  3TOB A;  1TBO A;  2OVO A;  3VDP A;  2NU2 I;  2WCY A;  3R5B A;  1CGJ I;  3OVO A;  1MJ9 A;  1SGQ I;  1PJU A;  2WGC A;  1AN1 I;  1DS3 I;  4L9M A;  1CT0 I;  2V53 A;  2DKV A;  2LB7 A;  5EX3 A;  1SGD I;  1TBN A;  1WTJ A;  1LR9 A;  2ARP F;  2UZ3 A;  2L8E A;  4SGB I;  2V1C A;  2N71 A;  2E73 A;  1K7V A;  9WGA A;  1R79 A;  5HQ8 A;  3OXL A;  1IW4 A;  1MJA A;  1H0Z A;  2SGQ I;  3UOE A;  2XRC A;  3TJQ A;  1HJA I;  5E3P A;  1Y1B A;  1TBQ R;  1Y1C A;  2ROW A;  1SGP I;  2NU4 I;  1Z7K B;  1M8B A;  5FUW A;  5J8C A;  2E5R A;  5E3R A;  1PPF I;  2X3T A;  3CXL A;  4E1R A;  1BMO A;  2DB6 A;  1CT2 I;  2YUU A;  1Y8F A;  2RC4 A;  2RIJ A;  2GIV A;  2SGD I;  3MEK A;  1DS2 I;  1IY5 A;  2FNF X;  1K7T A;  2CWF A;  3UFF A;  1WGT A;  3VDU A;  2GKV A;  1NUB A;  2M5X A;  3UGD A;  1MT1 A;  2CJS C;  1IY6 A;  1N13 A;  1LR7 A;  1FAR A;  2J9R A;  2QQE A;  2WVJ A;  2QQ0 A;  3SGB I;  4B6D A;  2LEO A;  5FUY A;  3SEK C;  1V1H A;  1KMA A;  4FKD A;  2JA1 A;  1ULN A;  1P9Z A;  1OMU A;  2JZM A;  2GKT I;  2YQP A;  2CWG A;  2JW6 A;  3UEJ A;  1V1I A;  2SGE I;  2J87 A;  2JXD A;  2SGP I;  2V1C C;  5CCM A;  1KBF A;  2LUY A;  2W0T A;  4UXI A;  1KBE A;  3OXF A;  1UVG A;  5FUX A;  1U5K A;  3E2I A;  1WKX A;  4HGU A;  1FY7 A;  4JCV E;  3PDN A;  2BUS A;  1FAQ A;  5CCL A;  2NU1 I;  3FSY A;  2P6A C;  3TO6 A;  4E1P A;  1ULM A;  4DNC A;  3OXG A;  4A24 A;  1ULK A;  2B0U C;  3UGI A;  3D00 A;  3B4V C;  2KMR A;  2N52 A;  1YU6 C;  2ENN A;  1R0R I;  1TUR A;  2F3C I;  2CWH A;  2L7X A;  2PQ8 A;  1VDD A;  1TUS A;  2SGF I;  5JHW C;  1OVO A;  2OD1 A;  3GOX A;  1CE3 A;  3FSX A;  4UXH A;  1MJB A;  3TO9 A;  1PCE A;  1SGY I;  3R5C A;  2UVO A;  2N17 A;  1RFH A;  1SGE I;  1Z2I A;  4OVO A;  1OMT A;  3QWP A;  2KMQ A;  3KY9 A;  2GKR I;  2ORW A;  2VRW B;  1CSO I;  1CGI I;  2JYY A;  4GI3 C;  2Y0M A;  5DAE A;  2B8T A;  3VE5 A;  1CHO I;  2OU2 A;  5EX0 A;  1HPT A;  1PTQ A;  2KCX A;  1X74 A;  2N1A B;  2ERW A;  2QPO A;  3TOA A;  3QTL D;  4AML A;  2ODD A;  2X52 A;  1Q9B A;  5FUV A;  1S20 A;  1YTP A;  7WGA A;  1LR8 A;  2ENZ A;  2KMP A;  1XA6 A;  2ELI A;  3HH2 C;  3FC3 A;  1P9G A;  1UUC A;  1TIH A;  1PTR A;  1HDL A;  1TOT A;  1BUS A;  2DIP A;  5HI7 A;  3R5D A;  3TO7 A;  1W4R A;  2NU3 I;  2ORV A;  2GVI A;  3QAH A;  3RU0 A;  1UHA A;  2NU0 I;  1SGR I;  1WGC A;  2QQC A;  1K7U A; 
#chains in the Genus database with same CATH homology
 3UGL A;  2KMO A;  4UXJ A;  3BJI A;  1FYB A;  1CT4 I;  1SGN I;  3SGQ I;  2QQD A;  1UVF A;  2A20 A;  1X4S A;  3OL0 A;  1XX6 A;  1TBR R;  3E59 A;  1M8C A;  1W3S A;  2K9H A;  1XBT A;  3UEY A;  1OYV I;  1TGS I;  1TBO A;  2OVO A;  3VDP A;  2NU2 I;  2WCY A;  1CGJ I;  3OVO A;  1SGQ I;  1PJU A;  1AN1 I;  1DS3 I;  4L9M A;  1CT0 I;  2V53 A;  5EX3 A;  1SGD I;  1TBN A;  2UZ3 A;  1LR9 A;  2ARP F;  1H0Z A;  2L8E A;  4SGB I;  2V1C A;  2N71 A;  2E73 A;  1R79 A;  5HQ8 A;  3OXL A;  1IW4 A;  2SGQ I;  2XRC A;  3TJQ A;  1HJA I;  1Y1B A;  1TBQ R;  1Y1C A;  2ROW A;  1SGP I;  2NU4 I;  1Z7K B;  1M8B A;  5FUW A;  2E5R A;  1PPF I;  3CXL A;  4E1R A;  1BMO A;  2DB6 A;  1CT2 I;  2YUU A;  1Y8F A;  2SGD I;  3MEK A;  1DS2 I;  1IY5 A;  2FNF X;  3UFF A;  3VDU A;  2GKV A;  1NUB A;  2M5X A;  3UGD A;  1MT1 A;  2CJS C;  1IY6 A;  1N13 A;  1LR7 A;  1FAR A;  2J9R A;  2QQE A;  2WVJ A;  2QQ0 A;  3SGB I;  4B6D A;  2LEO A;  5FUY A;  3SEK C;  1V1H A;  1KMA A;  4FKD A;  2JA1 A;  1OMU A;  2JZM A;  2GKT I;  2YQP A;  2JW6 A;  3UEJ A;  1V1I A;  2J87 A;  2JXD A;  2SGP I;  2V1C C;  5CCM A;  1KBF A;  2LUY A;  2W0T A;  4UXI A;  1KBE A;  3OXF A;  1UVG A;  5FUX A;  1U5K A;  3E2I A;  4HGU A;  4JCV E;  3PDN A;  2BUS A;  1FAQ A;  5CCL A;  2NU1 I;  2P6A C;  4E1P A;  3OXG A;  4A24 A;  2B0U C;  3UGI A;  3D00 A;  3B4V C;  2KMR A;  2N52 A;  1YU6 C;  2ENN A;  1R0R I;  1TUR A;  2F3C I;  2L7X A;  2SGF I;  1VDD A;  1TUS A;  5JHW C;  1OVO A;  2OD1 A;  3GOX A;  1CE3 A;  4UXH A;  1PCE A;  1SGY I;  2N17 A;  1RFH A;  1SGE I;  4OVO A;  1OMT A;  3QWP A;  2KMQ A;  3KY9 A;  2GKR I;  2ORW A;  2VRW B;  1CSO I;  1CGI I;  2JYY A;  4GI3 C;  5DAE A;  3VE5 A;  2B8T A;  1CHO I;  5EX0 A;  1HPT A;  1PTQ A;  2KCX A;  1X74 A;  2N1A B;  2ERW A;  2QPO A;  3QTL D;  2ODD A;  5FUV A;  1YTP A;  3FC3 A;  1LR8 A;  2ENZ A;  2KMP A;  1XA6 A;  2ELI A;  3HH2 C;  1UUC A;  1TIH A;  1PTR A;  1HDL A;  1TOT A;  1BUS A;  2DIP A;  5HI7 A;  1W4R A;  2NU3 I;  2ORV A;  2GVI A;  3RU0 A;  2NU0 I;  1SGR I;  2QQC A;  2SGE I; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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