4E81A

Crystal structure of the substrate binding domain of e.coli dnak in complex with a short apidaecin peptide
Total Genus 63
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
63
sequence length
214
structure length
214
Chain Sequence
VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKMQELAQVSQKLMEIA
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Chaperone
molecule keywords Chaperone protein DnaK
publication title Api88 is a novel antibacterial designer Peptide to treat systemic infections with multidrug-resistant gram-negative pathogens.
pubmed doi rcsb
source organism Escherichia coli
total genus 63
structure length 214
sequence length 214
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-03-19
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.10 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Substrate Binding Domain Of Dnak; Chain:A; Domain 2 4e81A02
2.60.34.10 Mainly Beta Sandwich Substrate Binding Domain Of DNAk; Chain A, domain 1 Substrate Binding Domain Of DNAk; Chain A, domain 1 4e81A01
4R5LA 3T4AG 4JWIA 3DOBA 3H0XA 4JNFA 4F01A 4JNEA 4EZQA 4R5GA 3T48A 3DQGA 4HY9A 3T46A 3DPOA 2BPRA 3C7NA 4JWCA 4R5KA 4B9QA 4EZYA 4EZRA 5E84A 3D2FA 3T49A 4HYBA 3L3OM 3T47A 4EZTA 1BPRA 4JWDA 4EZNA 1CKRA 4EZSA 1Q5LA 1U00A 1DKZA 3C7NB 2WINM 4JWEA 2OP6A 4E81A 3OHXM 4EZXA 1DG4A 2KHOA 4H6HA 4EZPA 4EZOA 1YUWA 4EZUA 1DKYA 4F00A 2QXLA 3N8EA 4R5JA 4H6IA 2V7YA 3D2EA 1DKXA 4R5IA 5TKYA 7HSCA 4FL9A 3QNJA 4WV5A 4EZWA 4EZZA 3DPQA 2QFFA 4PO2A 4WV7A 4JN4A 3DPPA 4EZVA
chains in the Genus database with same CATH superfamily
4R5LA 4UDYX 1LQ7A 4IW0A 3ZEFA 3QWEA 3DPOA 3C7NA 4ILIA 5E84A 4HYBA 2GF4A 3VEAA 2YL9A 4AZBA 3QNIA 3CZSA 3DX2A 2YL5A 1HTYA 3Q0KA 4F01A 3A98A 4JLCA 2JNSA 4R5GA 4AZ6A 3UITA 3DDFA 4JWDA 2JNKA 4AZCB 1U00A 3BVTA 1DG4A 1YUWA 4EZUA 3BUIA 4DCNC 5TKYA 2RAIA 2X3VA 2F7RA 2Z0OA 3RPMA 3VEBA 2YIVX 3D51A 3O3OB 1I49A 3D4ZA 3CZNA 3B53X 3D4YA 5C5BB 4E3CA 4WV7A 4AZIA 4EZVA 2EX3B 2D4CA 1UPXA 3RV1A 4NPHA 1I4TA 4IM3A 2F7QA 4JWCA 3EJQA 3O3MB 4JWEA 2RAJA 4D8JA 4H6HA 2V0OA 4AVMA 4AZGA 4FZPA 4R5IA 3RV0A 3FD9A 3B52X 4KIKB 2N3KA 2GA9D 3BUBA 4AZCA 1HXKA 4WPEA 4EZTA 3EJPA 4EZSA 3ACOA 3F7WA 4FM3A 1OAOA 2EFKA 2QXLA 3I01A 2YI8A 1TQWA 4BNEA 4EZZA 4WV5A 3DOBA 2OW7A 3LMFA 4ATMA 2ZXQA 3HAHA 1CKRA 3D2FA 1JQKA 3Q84A 4E81A 2OW6A 4EZOA 4JL9A 3D52A 1DKYA 2GAFD 4AKVA 3QNJA 4NSWA 3ER9B 3DX0A 4JNFA 1YWMA 4HY9A 4R5KA 2ND1A 3DDGA 3L3OM 3SBSA 3KAWA 3B51X 2F1BA 1OA0A 2YIAA 3LLLA 2RAKA 4KIKA 3DPQA 1R33A 1ZYLA 2FICA 1R5EA 3EJTA 3T4AG 4H8SA 4EZQA 4I43A 4EZRA 3T47A 4EZNA 2YKTA 2OP6A 2Z8YA 3G9GA 1X04A 3BVXA 4H6IA 1GNLA 1DKXA 2X5CA 2QFFA 1W9MA 3DPPA 2ND0A 1SU8A 3QA8A 3O3NB 1SU7A 2YL6A 3SBTB 4WPCA 2WINM 3GI7A 3CAZA 2EWFA 7HSCA 2YLLA 4EZWA 2WYHA 4HR1B 2PMRA 3I39X 2FYVA 2NCZA 4AZ7A 1O7DB 3CVRA 2C08A 4EZYA 4ILHB 3KDRA 1ZWWA 3I04A 1Q5LA 3L3PA 2PY6A 3N8EA 1I4LA 2OZNB 3BLBA 4FZSA 4G6QA 1E2UA 4JNEA 4IM0A 4NQIA 1BPRA 2RT6A 5FIGA 4IWPA 3OHXM 2KHOA 5C5BA 3EJRA 3D2EA 1X03A 2F1AA 3OK8A 4AZHA 2YLAA 3PLTA 3DQGA 2BPRA 4B9QA 4I1QA 4DYLA 3SOGA 3EJSA 2QKWA 3KAVA 4IM2A 3BUQA 3D50A 3DX1A 2ALWA 4F00A 1URUA 3DX3A 3ABHA 1SU6A 4HR1A 4FZOA 4FL9A 4AZ5A 4MQDA 4UDXX 2MI7A 1TQSA 1GNTA 1GN9A 1QWUA 1WDZA 3T46A 2X3XA 2OBLA 3BVWA 1TQUA 2Z0NA 3BVVA 1TQTA 1E1DA 1QX1A 2LM0A 3CV5A 3ER8C 3CKDA 2F7PA 3DYTA 3T48A 2OBMA 1MJGA 2Q13A 3C7NB 1E9VA 2O0I1 3HAIA 4EZPA 4ILGA 1QWNA 2WYIA 2OO2A 4PO2A 4JN4A 4R5JA 3DX4A 2YIBA 4JWIA 3ZEDA 2YL8A 2EFLA 2D1LA 5KBPA 3SYVA 5FLEX 3T49A 1PS3A 2X3WA 2Q12A 3ERCC 1DKZA 3LVTA 1O7DC 1TQVA 3VKHA 4EZXA 2F18A 3BUDA 3QE6A 2LXYA 1HWWA 3H0XA 2YI9A 4IWQA 4M0MA 1Y2OA 3HAJA 4IWOA 3OWGA 3M3WA 3BVUA 1I4DA 3I2WA 1R34A 3EJUA 1SUFA 2ELBA 2Z0VA 2V7YA 3BUPA 2F7OA 1OA1A
chains in the Genus database with same CATH topology
4R5LA 4UDYX 4IW0A 2GA9D 2ND0A 1GNTA 1GN9A 1SU8A 3ZEFA 3QA8A 3T46A 3DPOA 3O3NB 3C7NA 1SU7A 4ILIA 2OBLA 5E84A 4HYBA 3SBTB 4EZTA 3VEAA 4EZSA 2WINM 3GI7A 3F7WA 4FM3A 1OAOA 1E1DA 2QXLA 2LM0A 3I01A 2EWFA 2YI8A 7HSCA 4EZWA 4EZZA 3ER8C 4HR1B 4WV5A 3I39X 3DOBA 4F01A 3A98A 4JLCA 2JNSA 2NCZA 4R5GA 3T48A 3LMFA 2OBMA 1MJGA 1CKRA 4EZYA 4ILHB 3D2FA 3KDRA 3UITA 4JWDA 1JQKA 3I04A 1U00A 1Q5LA 3C7NB 4E81A 1E9VA 1DG4A 4EZOA 4JL9A 4EZPA 2PY6A 1YUWA 4ILGA 4EZUA 1DKYA 2GAFD 3N8EA 1OA1A 5TKYA 3QNJA 3ER9B 4PO2A 4JN4A 4R5JA 4G6QA 4JWIA 2YIBA 3VEBA 4JNFA 2YIVX 1E2UA 3ZEDA 4JNEA 4IM0A 3O3OB 4HY9A 4R5KA 2ND1A 5FLEX 3T49A 3L3OM 1BPRA 3SBSA 2RT6A 3ERCC 5FIGA 3KAWA 1DKZA 4IWPA 3OHXM 3VKHA 3B53X 4EZXA 3B51X 2KHOA 1OA0A 2YIAA 4E3CA 3D2EA 4KIKA 3DPQA 4WV7A 1ZYLA 4EZVA 3T4AG 3H0XA 2EX3B 2YI9A 4IWQA 4M0MA 1UPXA 3RV1A 4EZQA 4NPHA 3DQGA 4I43A 4IM3A 2BPRA 4JWCA 4B9QA 4EZRA 3T47A 4EZNA 3O3MB 3KAVA 3OWGA 4IM2A 4IWOA 4JWEA 2OP6A 4D8JA 4H6HA 2Z8YA 4F00A 1SUFA 1GNLA 4H6IA 2V7YA 1SU6A 1DKXA 4HR1A 4R5IA 3RV0A 3FD9A 4FL9A 2X5CA 3B52X 2QFFA 1W9MA 4MQDA 4UDXX 3DPPA 4KIKB 2N3KA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4R5L A;  3T4A G;  4JWI A;  3DOB A;  3H0X A;  4JNF A;  4F01 A;  4JNE A;  4EZQ A;  4R5G A;  3T48 A;  3DQG A;  4HY9 A;  3T46 A;  3DPO A;  2BPR A;  3C7N A;  4JWC A;  4R5K A;  4B9Q A;  4EZY A;  4EZR A;  5E84 A;  3D2F A;  3T49 A;  4HYB A;  3L3O M;  3T47 A;  4EZT A;  1BPR A;  4JWD A;  4EZN A;  1CKR A;  4EZS A;  1Q5L A;  1U00 A;  1DKZ A;  3C7N B;  2WIN M;  4JWE A;  2OP6 A;  4E81 A;  3OHX M;  4EZX A;  1DG4 A;  2KHO A;  4H6H A;  4EZP A;  4EZO A;  1YUW A;  4EZU A;  1DKY A;  4F00 A;  2QXL A;  3N8E A;  4R5J A;  4H6I A;  2V7Y A;  3D2E A;  1DKX A;  4R5I A;  5TKY A;  7HSC A;  4FL9 A;  3QNJ A;  4WV5 A;  4EZW A;  4EZZ A;  3DPQ A;  2QFF A;  4PO2 A;  4WV7 A;  4JN4 A;  3DPP A;  4EZV A; 
#chains in the Genus database with same CATH topology
 4R5L A;  4UDY X;  1LQ7 A;  4IW0 A;  3ZEF A;  3QWE A;  3DPO A;  3C7N A;  4ILI A;  5E84 A;  4HYB A;  2GF4 A;  3VEA A;  2YL9 A;  4AZB A;  3QNI A;  3CZS A;  3DX2 A;  2YL5 A;  1HTY A;  3Q0K A;  4F01 A;  3A98 A;  4JLC A;  2JNS A;  4R5G A;  4AZ6 A;  3UIT A;  3DDF A;  4JWD A;  2JNK A;  4AZC B;  1U00 A;  3BVT A;  1DG4 A;  1YUW A;  4EZU A;  3BUI A;  4DCN C;  5TKY A;  2RAI A;  2X3V A;  2F7R A;  2Z0O A;  3RPM A;  3VEB A;  2YIV X;  3D51 A;  3O3O B;  1I49 A;  3D4Z A;  3CZN A;  3B53 X;  3D4Y A;  5C5B B;  4E3C A;  4WV7 A;  4AZI A;  4EZV A;  2EX3 B;  2D4C A;  1UPX A;  3RV1 A;  4NPH A;  1I4T A;  4IM3 A;  2F7Q A;  4JWC A;  3EJQ A;  3O3M B;  4JWE A;  2RAJ A;  4D8J A;  4H6H A;  2V0O A;  4AVM A;  4AZG A;  4FZP A;  4R5I A;  3RV0 A;  3FD9 A;  3B52 X;  4KIK B;  2N3K A;  2GA9 D;  3BUB A;  4AZC A;  1HXK A;  4WPE A;  4EZT A;  3EJP A;  4EZS A;  3ACO A;  3F7W A;  4FM3 A;  1OAO A;  2EFK A;  2QXL A;  3I01 A;  2YI8 A;  1TQW A;  4BNE A;  4EZZ A;  4WV5 A;  3DOB A;  2OW7 A;  3LMF A;  4ATM A;  2ZXQ A;  3HAH A;  1CKR A;  3D2F A;  1JQK A;  3Q84 A;  4E81 A;  2OW6 A;  4EZO A;  4JL9 A;  3D52 A;  1DKY A;  2GAF D;  4AKV A;  3QNJ A;  4NSW A;  3ER9 B;  3DX0 A;  4JNF A;  1YWM A;  4HY9 A;  4R5K A;  2ND1 A;  3DDG A;  3L3O M;  3SBS A;  3KAW A;  3B51 X;  2F1B A;  1OA0 A;  2YIA A;  3LLL A;  2RAK A;  4KIK A;  3DPQ A;  1R33 A;  1ZYL A;  2FIC A;  1R5E A;  3EJT A;  3T4A G;  4H8S A;  4EZQ A;  4I43 A;  4EZR A;  3T47 A;  4EZN A;  2YKT A;  2OP6 A;  2Z8Y A;  3G9G A;  1X04 A;  3BVX A;  4H6I A;  1GNL A;  1DKX A;  2X5C A;  2QFF A;  1W9M A;  3DPP A;  2ND0 A;  1SU8 A;  3QA8 A;  3O3N B;  1SU7 A;  2YL6 A;  3SBT B;  4WPC A;  2WIN M;  3GI7 A;  3CAZ A;  2EWF A;  7HSC A;  2YLL A;  4EZW A;  2WYH A;  4HR1 B;  2PMR A;  3I39 X;  2FYV A;  2NCZ A;  4AZ7 A;  1O7D B;  3CVR A;  2C08 A;  4EZY A;  4ILH B;  3KDR A;  1ZWW A;  3I04 A;  1Q5L A;  3L3P A;  2PY6 A;  3N8E A;  1I4L A;  2OZN B;  3BLB A;  4FZS A;  4G6Q A;  1E2U A;  4JNE A;  4IM0 A;  4NQI A;  1BPR A;  2RT6 A;  5FIG A;  4IWP A;  3OHX M;  2KHO A;  5C5B A;  3EJR A;  3D2E A;  1X03 A;  2F1A A;  3OK8 A;  4AZH A;  2YLA A;  3PLT A;  3DQG A;  2BPR A;  4B9Q A;  4I1Q A;  4DYL A;  3SOG A;  3EJS A;  2QKW A;  3KAV A;  4IM2 A;  3BUQ A;  3D50 A;  3DX1 A;  2ALW A;  4F00 A;  1URU A;  3DX3 A;  3ABH A;  1SU6 A;  4HR1 A;  4FZO A;  4FL9 A;  4AZ5 A;  4MQD A;  4UDX X;  2MI7 A;  1TQS A;  1GNT A;  1GN9 A;  1QWU A;  1WDZ A;  3T46 A;  2X3X A;  2OBL A;  3BVW A;  1TQU A;  2Z0N A;  3BVV A;  1TQT A;  1E1D A;  1QX1 A;  2LM0 A;  3CV5 A;  3ER8 C;  3CKD A;  2F7P A;  3DYT A;  3T48 A;  2OBM A;  1MJG A;  2Q13 A;  3C7N B;  1E9V A;  2O0I 1;  3HAI A;  4EZP A;  4ILG A;  1QWN A;  2WYI A;  2OO2 A;  4PO2 A;  4JN4 A;  4R5J A;  3DX4 A;  2YIB A;  4JWI A;  3ZED A;  2YL8 A;  2EFL A;  2D1L A;  5KBP A;  3SYV A;  5FLE X;  3T49 A;  1PS3 A;  2X3W A;  2Q12 A;  3ERC C;  1DKZ A;  3LVT A;  1O7D C;  1TQV A;  3VKH A;  4EZX A;  2F18 A;  3BUD A;  3QE6 A;  2LXY A;  1HWW A;  3H0X A;  2YI9 A;  4IWQ A;  4M0M A;  1Y2O A;  3HAJ A;  4IWO A;  3OWG A;  3M3W A;  3BVU A;  1I4D A;  3I2W A;  1R34 A;  3EJU A;  1SUF A;  2ELB A;  2Z0V A;  2V7Y A;  3BUP A;  2F7O A;  1OA1 A; 
#chains in the Genus database with same CATH homology
 4R5L A;  4UDY X;  4IW0 A;  2GA9 D;  2ND0 A;  1GNT A;  1GN9 A;  1SU8 A;  3ZEF A;  3QA8 A;  3T46 A;  3DPO A;  3O3N B;  3C7N A;  1SU7 A;  4ILI A;  2OBL A;  5E84 A;  4HYB A;  3SBT B;  4EZT A;  3VEA A;  4EZS A;  2WIN M;  3GI7 A;  3F7W A;  4FM3 A;  1OAO A;  1E1D A;  2QXL A;  2LM0 A;  3I01 A;  2EWF A;  2YI8 A;  7HSC A;  4EZW A;  4EZZ A;  3ER8 C;  4HR1 B;  4WV5 A;  3I39 X;  3DOB A;  4F01 A;  3A98 A;  4JLC A;  2JNS A;  2NCZ A;  4R5G A;  3T48 A;  3LMF A;  2OBM A;  1MJG A;  1CKR A;  4EZY A;  4ILH B;  3D2F A;  3KDR A;  3UIT A;  4JWD A;  1JQK A;  3I04 A;  1U00 A;  1Q5L A;  3C7N B;  4E81 A;  1E9V A;  1DG4 A;  4EZO A;  4JL9 A;  4EZP A;  2PY6 A;  1YUW A;  4ILG A;  4EZU A;  1DKY A;  2GAF D;  3N8E A;  1OA1 A;  5TKY A;  3QNJ A;  3ER9 B;  4PO2 A;  4JN4 A;  4R5J A;  4G6Q A;  4JWI A;  2YIB A;  3VEB A;  4JNF A;  2YIV X;  1E2U A;  3ZED A;  4JNE A;  4IM0 A;  3O3O B;  4HY9 A;  4R5K A;  2ND1 A;  5FLE X;  3T49 A;  3L3O M;  1BPR A;  3SBS A;  2RT6 A;  3ERC C;  5FIG A;  3KAW A;  1DKZ A;  4IWP A;  3OHX M;  3VKH A;  3B53 X;  4EZX A;  3B51 X;  2KHO A;  1OA0 A;  2YIA A;  4E3C A;  3D2E A;  4KIK A;  3DPQ A;  4WV7 A;  1ZYL A;  4EZV A;  3T4A G;  3H0X A;  2EX3 B;  2YI9 A;  4IWQ A;  4M0M A;  1UPX A;  3RV1 A;  4EZQ A;  4NPH A;  3DQG A;  4I43 A;  4IM3 A;  2BPR A;  4JWC A;  4B9Q A;  4EZR A;  3T47 A;  4EZN A;  3O3M B;  3KAV A;  3OWG A;  4IM2 A;  4IWO A;  4JWE A;  2OP6 A;  4D8J A;  4H6H A;  2Z8Y A;  4F00 A;  1SUF A;  1GNL A;  4H6I A;  2V7Y A;  1SU6 A;  1DKX A;  4HR1 A;  4R5I A;  3RV0 A;  3FD9 A;  4FL9 A;  2X5C A;  3B52 X;  2QFF A;  1W9M A;  4MQD A;  4UDX X;  3DPP A;  4KIK B;  2N3K A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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