4EZOA

Crystal structure of the substrate binding domain of e.coli dnak in complex with pr-39 (residues 1 to 15)
Total Genus 61
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
61
sequence length
211
structure length
211
Chain Sequence
VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKMQELAQVSQKLM
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Chaperone/peptide binding protein
molecule keywords Chaperone protein DnaK
publication title Structural Studies on the Forward and Reverse Binding Modes of Peptides to the Chaperone DnaK.
pubmed doi rcsb
source organism Escherichia coli
total genus 61
structure length 211
sequence length 211
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-05-03
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.10 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Substrate Binding Domain Of Dnak; Chain:A; Domain 2 4ezoA02
2.60.34.10 Mainly Beta Sandwich Substrate Binding Domain Of DNAk; Chain A, domain 1 Substrate Binding Domain Of DNAk; Chain A, domain 1 4ezoA01
3C7NA 4EZWA 4EZSA 7HSCA 3T47A 4H6IA 3C7NB 3DPPA 3DPQA 4HYBA 4R5JA 4JNFA 5E84A 1DG4A 2WINM 4JWCA 4EZVA 1DKYA 3H0XA 1DKZA 4JWDA 2BPRA 2QXLA 1U00A 4JWEA 1DKXA 3D2FA 1BPRA 4EZTA 4E81A 3N8EA 4R5KA 4EZZA 4R5LA 1YUWA 4EZXA 3D2EA 5TKYA 4HY9A 4JWIA 3DPOA 4EZYA 1Q5LA 3L3OM 2KHOA 4R5GA 3DOBA 4WV5A 4EZRA 4WV7A 4EZQA 4FL9A 4JN4A 4F00A 1CKRA 4EZNA 2OP6A 3T4AG 3T46A 4R5IA 3OHXM 4EZOA 4EZUA 4PO2A 3QNJA 4F01A 2QFFA 4B9QA 4EZPA 2V7YA 4H6HA 4JNEA 3DQGA 3T48A 3T49A
chains in the Genus database with same CATH superfamily
2JNKA 3CV5A 1HWWA 4ILGA 1LQ7A 1E2UA 1DKXA 4R5KA 1QWNA 1TQWA 3A98A 3RV1A 3DX0A 3DX3A 4AZ5A 4JLCA 4H6IA 2WINM 1YWMA 1DKYA 3BUIA 4FZSA 4EZZA 4R5LA 4AVMA 4E3CA 3VEAA 1I4LA 3L3PA 1SU6A 3QE6A 2YIVX 4BNEA 2EWFA 4R5IA 4EZUA 3LMFA 2QKWA 2O0I1 4AZ7A 2YIAA 3DPPA 4HYBA 4UDYX 1TQVA 1DKZA 3SOGA 4E81A 3PLTA 2WYHA 4D8JA 4EZYA 2Z8YA 4R5GA 2KHOA 3LLLA 2X3VA 1OA0A 4H8SA 4F00A 3I2WA 4I43A 2QFFA 2V7YA 1R5EA 3D51A 2YI8A 4AZGA 3ACOA 3DDFA 3QNIA 4NPHA 2Z0VA 4JWDA 1HXKA 4IM3A 4IWPA 1YUWA 4AZIA 4FL9A 1ZWWA 2OZNB 2OP6A 2YL9A 3I04A 3Q0KA 3VKHA 3T46A 2LM0A 2OW6A 2YKTA 5E84A 3BVXA 4NSWA 1ZYLA 3DYTA 4EZTA 1X03A 1GN9A 4ILIA 3DOBA 1I4TA 4JN4A 4IM0A 1QWUA 4PO2A 2F7PA 4F01A 4AZ6A 2LXYA 3KDRA 3BUBA 4EZWA 3D4ZA 3F7WA 3O3NB 3HAHA 1U00A 2X3XA 4HY9A 4JWIA 2PY6A 2RAJA 4EZQA 3EJRA 3EJQA 3I39X 1E1DA 1TQTA 4FM3A 3LVTA 2Q13A 3CZSA 4HR1A 2D1LA 3M3WA 4JNEA 4AZCA 4DCNC 3I01A 1R33A 3DX2A 3OWGA 3EJTA 2F1AA 2OBLA 4EZXA 3KAWA 5TKYA 3B52X 4IW0A 4AZBA 3ABHA 2ELBA 4AZHA 1TQSA 3ER9B 3T4AG 2ND1A 3OHXM 2MI7A 3CVRA 3T48A 4EZSA 3DPQA 4JNFA 5C5BB 2BPRA 2OO2A 3RPMA 3N8EA 1SU8A 4KIKB 3DPOA 2ALWA 2GF4A 3EJPA 2GA9D 3SYVA 4WV7A 3SBSA 2F7RA 2OW7A 2Z0NA 3HAJA 2RAIA 2F18A 1O7DC 3C7NB 4IWQA 3D2FA 3B53X 1QX1A 3EJUA 2X3WA 4JL9A 4WPCA 3BVWA 2EFLA 4EZOA 3BLBA 1E9VA 2RAKA 2EX3B 4DYLA 3D50A 2C08A 3EJSA 5C5BA 5FLEX 2F1BA 4FZPA 1PS3A 3BUDA 4FZOA 4EZNA 3QNJA 3C7NA 7HSCA 4JWCA 3CKDA 3H0XA 2V0OA 2YI9A 1SUFA 3ZEFA 1HTYA 1W9MA 1JQKA 3CAZA 2YL8A 4NQIA 1CKRA 3BVUA 2YIBA 4B9QA 3VEBA 2YL5A 2X5CA 1I4DA 2YLAA 2FYVA 4EZVA 2Z0OA 1BPRA 1MJGA 4UDXX 2EFKA 4WV5A 3BUQA 2F7OA 3ZEDA 3KAVA 3GI7A 4ILHB 4MQDA 3ERCC 2GAFD 1Y2OA 1UPXA 3OK8A 2N3KA 1WDZA 2NCZA 3DX1A 3QA8A 4I1QA 3D2EA 4IWOA 2WYIA 3D52A 1GNLA 2PMRA 3ER8C 2FICA 1OAOA 3UITA 1I49A 3HAIA 3T49A 4R5JA 1DG4A 2ZXQA 2RT6A 3O3MB 2Q12A 5FIGA 3B51X 1Q5LA 1O7DB 3L3OM 4WPEA 1GNTA 3Q84A 3BVTA 4H6HA 3RV0A 3T47A 3CZNA 3D4YA 3QWEA 5KBPA 1URUA 2D4CA 2YL6A 4KIKA 3BUPA 4M0MA 3G9GA 4IM2A 3DDGA 2YLLA 4HR1B 3SBTB 3DX4A 4AZCB 3DQGA 1X04A 1R34A 4AKVA 4G6QA 2JNSA 2QXLA 1OA1A 3O3OB 4JWEA 3FD9A 2ND0A 4EZRA 4ATMA 2OBMA 2F7QA 1TQUA 4EZPA 3BVVA 1SU7A
chains in the Genus database with same CATH topology
2N3KA 3C7NB 5E84A 2NCZA 4IWQA 1ZYLA 4ILGA 1E2UA 1DKXA 3D2FA 3QA8A 3B53X 4EZTA 4R5KA 3D2EA 1GN9A 4IWOA 4ILIA 4JL9A 3DOBA 1GNLA 4JN4A 3A98A 3ER8C 4IM0A 3RV1A 4EZOA 1OAOA 4PO2A 4F01A 1E9VA 3UITA 2EX3B 3KDRA 3T49A 4EZWA 4JLCA 4H6IA 4R5JA 1DG4A 2WINM 3F7WA 2RT6A 3O3NB 5FLEX 1DKYA 3O3MB 3ZEFA 1U00A 5FIGA 4EZZA 4R5LA 3B51X 4E3CA 1Q5LA 4HY9A 4JWIA 3VEAA 2PY6A 3L3OM 1GNTA 4EZQA 3I39X 1SU6A 1E1DA 4EZNA 4FM3A 2YIVX 2EWFA 4R5IA 4EZUA 4HR1A 3LMFA 3QNJA 4D8JA 4H6HA 4JNEA 3RV0A 3C7NA 7HSCA 3I01A 3T47A 2YIAA 3DPPA 4HYBA 4JWCA 4UDYX 3H0XA 1DKZA 3OWGA 4E81A 2OBLA 4EZXA 4KIKA 3KAWA 2YI9A 1SUFA 5TKYA 1W9MA 3B52X 1JQKA 2Z8YA 2KHOA 4IW0A 4M0MA 4R5GA 4IM2A 4EZYA 1OA0A 4F00A 1CKRA 4I43A 3ER9B 2YIBA 3T4AG 2ND1A 3OHXM 4HR1B 2QFFA 4B9QA 3VEBA 2V7YA 3SBTB 2YI8A 3DQGA 3T48A 4EZSA 3DPQA 4NPHA 4JNFA 2X5CA 4G6QA 4EZVA 4JWDA 2JNSA 2QXLA 1OA1A 3O3OB 4JWEA 1BPRA 2BPRA 4IM3A 3N8EA 1MJGA 4UDXX 4IWPA 1YUWA 1SU8A 4KIKB 3DPOA 4WV5A 3FD9A 2ND0A 4EZRA 4WV7A 2GA9D 3ZEDA 3KAVA 4FL9A 3SBSA 2OBMA 3GI7A 2OP6A 4ILHB 3I04A 3VKHA 3T46A 4MQDA 4EZPA 3ERCC 2LM0A 2GAFD 1UPXA 1SU7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3C7N A;  4EZW A;  4EZS A;  7HSC A;  3T47 A;  4H6I A;  3C7N B;  3DPP A;  3DPQ A;  4HYB A;  4R5J A;  4JNF A;  5E84 A;  1DG4 A;  2WIN M;  4JWC A;  4EZV A;  1DKY A;  3H0X A;  1DKZ A;  4JWD A;  2BPR A;  2QXL A;  1U00 A;  4JWE A;  1DKX A;  3D2F A;  1BPR A;  4EZT A;  4E81 A;  3N8E A;  4R5K A;  4EZZ A;  4R5L A;  1YUW A;  4EZX A;  3D2E A;  5TKY A;  4HY9 A;  4JWI A;  3DPO A;  4EZY A;  1Q5L A;  3L3O M;  2KHO A;  4R5G A;  3DOB A;  4WV5 A;  4EZR A;  4WV7 A;  4EZQ A;  4FL9 A;  4JN4 A;  4F00 A;  1CKR A;  4EZN A;  2OP6 A;  3T4A G;  3T46 A;  4R5I A;  3OHX M;  4EZO A;  4EZU A;  4PO2 A;  3QNJ A;  4F01 A;  2QFF A;  4B9Q A;  4EZP A;  2V7Y A;  4H6H A;  4JNE A;  3DQG A;  3T48 A;  3T49 A; 
#chains in the Genus database with same CATH topology
 2JNK A;  3CV5 A;  1HWW A;  4ILG A;  1LQ7 A;  1E2U A;  1DKX A;  4R5K A;  1QWN A;  1TQW A;  3A98 A;  3RV1 A;  3DX0 A;  3DX3 A;  4AZ5 A;  4JLC A;  4H6I A;  2WIN M;  1YWM A;  1DKY A;  3BUI A;  4FZS A;  4EZZ A;  4R5L A;  4AVM A;  4E3C A;  3VEA A;  1I4L A;  3L3P A;  1SU6 A;  3QE6 A;  2YIV X;  4BNE A;  2EWF A;  4R5I A;  4EZU A;  3LMF A;  2QKW A;  2O0I 1;  4AZ7 A;  2YIA A;  3DPP A;  4HYB A;  4UDY X;  1TQV A;  1DKZ A;  3SOG A;  4E81 A;  3PLT A;  2WYH A;  4D8J A;  4EZY A;  2Z8Y A;  4R5G A;  2KHO A;  3LLL A;  2X3V A;  1OA0 A;  4H8S A;  4F00 A;  3I2W A;  4I43 A;  2QFF A;  2V7Y A;  1R5E A;  3D51 A;  2YI8 A;  4AZG A;  3ACO A;  3DDF A;  3QNI A;  4NPH A;  2Z0V A;  4JWD A;  1HXK A;  4IM3 A;  4IWP A;  1YUW A;  4AZI A;  4FL9 A;  1ZWW A;  2OZN B;  2OP6 A;  2YL9 A;  3I04 A;  3Q0K A;  3VKH A;  3T46 A;  2LM0 A;  2OW6 A;  2YKT A;  5E84 A;  3BVX A;  4NSW A;  1ZYL A;  3DYT A;  4EZT A;  1X03 A;  1GN9 A;  4ILI A;  3DOB A;  1I4T A;  4JN4 A;  4IM0 A;  1QWU A;  4PO2 A;  2F7P A;  4F01 A;  4AZ6 A;  2LXY A;  3KDR A;  3BUB A;  4EZW A;  3D4Z A;  3F7W A;  3O3N B;  3HAH A;  1U00 A;  2X3X A;  4HY9 A;  4JWI A;  2PY6 A;  2RAJ A;  4EZQ A;  3EJR A;  3EJQ A;  3I39 X;  1E1D A;  1TQT A;  4FM3 A;  3LVT A;  2Q13 A;  3CZS A;  4HR1 A;  2D1L A;  3M3W A;  4JNE A;  4AZC A;  4DCN C;  3I01 A;  1R33 A;  3DX2 A;  3OWG A;  3EJT A;  2F1A A;  2OBL A;  4EZX A;  3KAW A;  5TKY A;  3B52 X;  4IW0 A;  4AZB A;  3ABH A;  2ELB A;  4AZH A;  1TQS A;  3ER9 B;  3T4A G;  2ND1 A;  3OHX M;  2MI7 A;  3CVR A;  3T48 A;  4EZS A;  3DPQ A;  4JNF A;  5C5B B;  2BPR A;  2OO2 A;  3RPM A;  3N8E A;  1SU8 A;  4KIK B;  3DPO A;  2ALW A;  2GF4 A;  3EJP A;  2GA9 D;  3SYV A;  4WV7 A;  3SBS A;  2F7R A;  2OW7 A;  2Z0N A;  3HAJ A;  2RAI A;  2F18 A;  1O7D C;  3C7N B;  4IWQ A;  3D2F A;  3B53 X;  1QX1 A;  3EJU A;  2X3W A;  4JL9 A;  4WPC A;  3BVW A;  2EFL A;  4EZO A;  3BLB A;  1E9V A;  2RAK A;  2EX3 B;  4DYL A;  3D50 A;  2C08 A;  3EJS A;  5C5B A;  5FLE X;  2F1B A;  4FZP A;  1PS3 A;  3BUD A;  4FZO A;  4EZN A;  3QNJ A;  3C7N A;  7HSC A;  4JWC A;  3CKD A;  3H0X A;  2V0O A;  2YI9 A;  1SUF A;  3ZEF A;  1HTY A;  1W9M A;  1JQK A;  3CAZ A;  2YL8 A;  4NQI A;  1CKR A;  3BVU A;  2YIB A;  4B9Q A;  3VEB A;  2YL5 A;  2X5C A;  1I4D A;  2YLA A;  2FYV A;  4EZV A;  2Z0O A;  1BPR A;  1MJG A;  4UDX X;  2EFK A;  4WV5 A;  3BUQ A;  2F7O A;  3ZED A;  3KAV A;  3GI7 A;  4ILH B;  4MQD A;  3ERC C;  2GAF D;  1Y2O A;  1UPX A;  3OK8 A;  2N3K A;  1WDZ A;  2NCZ A;  3DX1 A;  3QA8 A;  4I1Q A;  3D2E A;  4IWO A;  2WYI A;  3D52 A;  1GNL A;  2PMR A;  3ER8 C;  2FIC A;  1OAO A;  3UIT A;  1I49 A;  3HAI A;  3T49 A;  4R5J A;  1DG4 A;  2ZXQ A;  2RT6 A;  3O3M B;  2Q12 A;  5FIG A;  3B51 X;  1Q5L A;  1O7D B;  3L3O M;  4WPE A;  1GNT A;  3Q84 A;  3BVT A;  4H6H A;  3RV0 A;  3T47 A;  3CZN A;  3D4Y A;  3QWE A;  5KBP A;  1URU A;  2D4C A;  2YL6 A;  4KIK A;  3BUP A;  4M0M A;  3G9G A;  4IM2 A;  3DDG A;  2YLL A;  4HR1 B;  3SBT B;  3DX4 A;  4AZC B;  3DQG A;  1X04 A;  1R34 A;  4AKV A;  4G6Q A;  2JNS A;  2QXL A;  1OA1 A;  3O3O B;  4JWE A;  3FD9 A;  2ND0 A;  4EZR A;  4ATM A;  2OBM A;  2F7Q A;  1TQU A;  4EZP A;  3BVV A;  1SU7 A; 
#chains in the Genus database with same CATH homology
 2N3K A;  3C7N B;  5E84 A;  2NCZ A;  4IWQ A;  1ZYL A;  4ILG A;  1E2U A;  1DKX A;  3D2F A;  3QA8 A;  3B53 X;  4EZT A;  4R5K A;  3D2E A;  1GN9 A;  4IWO A;  4ILI A;  4JL9 A;  3DOB A;  1GNL A;  4JN4 A;  3A98 A;  3ER8 C;  4IM0 A;  3RV1 A;  4EZO A;  1OAO A;  4PO2 A;  4F01 A;  1E9V A;  3UIT A;  2EX3 B;  3KDR A;  3T49 A;  4EZW A;  4JLC A;  4H6I A;  4R5J A;  1DG4 A;  2WIN M;  3F7W A;  2RT6 A;  3O3N B;  5FLE X;  1DKY A;  3O3M B;  3ZEF A;  1U00 A;  5FIG A;  4EZZ A;  4R5L A;  3B51 X;  4E3C A;  1Q5L A;  4HY9 A;  4JWI A;  3VEA A;  2PY6 A;  3L3O M;  1GNT A;  4EZQ A;  3I39 X;  1SU6 A;  1E1D A;  4EZN A;  4FM3 A;  2YIV X;  2EWF A;  4R5I A;  4EZU A;  4HR1 A;  3LMF A;  3QNJ A;  4D8J A;  4H6H A;  4JNE A;  3RV0 A;  3C7N A;  7HSC A;  3I01 A;  3T47 A;  2YIA A;  3DPP A;  4HYB A;  4JWC A;  4UDY X;  3H0X A;  1DKZ A;  3OWG A;  4E81 A;  2OBL A;  4EZX A;  4KIK A;  3KAW A;  2YI9 A;  1SUF A;  5TKY A;  1W9M A;  3B52 X;  1JQK A;  2Z8Y A;  2KHO A;  4IW0 A;  4M0M A;  4R5G A;  4IM2 A;  4EZY A;  1OA0 A;  4F00 A;  1CKR A;  4I43 A;  3ER9 B;  2YIB A;  3T4A G;  2ND1 A;  3OHX M;  4HR1 B;  2QFF A;  4B9Q A;  3VEB A;  2V7Y A;  3SBT B;  2YI8 A;  3DQG A;  3T48 A;  4EZS A;  3DPQ A;  4NPH A;  4JNF A;  2X5C A;  4G6Q A;  4EZV A;  4JWD A;  2JNS A;  2QXL A;  1OA1 A;  3O3O B;  4JWE A;  1BPR A;  2BPR A;  4IM3 A;  3N8E A;  1MJG A;  4UDX X;  4IWP A;  1YUW A;  1SU8 A;  4KIK B;  3DPO A;  4WV5 A;  3FD9 A;  2ND0 A;  4EZR A;  4WV7 A;  2GA9 D;  3ZED A;  3KAV A;  4FL9 A;  3SBS A;  2OBM A;  3GI7 A;  2OP6 A;  4ILH B;  3I04 A;  3VKH A;  3T46 A;  4MQD A;  4EZP A;  3ERC C;  2LM0 A;  2GAF D;  1UPX A;  1SU7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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