4F3EA

Crystal structure of thermus thermophilus hb8 casa
Total Genus 158
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
158
sequence length
492
structure length
473
Chain Sequence
EKFNLIDEPWIPVLKGGRVVEVGIGEALLRAHEFARIETPSPLEEAVLHRLLLAVLHRALSGPRCPEDVLDWWRKGGFPQDPIRDYLNRFRDRFFLFHPEAPFLQVADLPEENPLPWSKLLPELENLPKATYAQAARALLVHQAFAPGGLLRRYGVGSAKDAPVARPALFLPTGQNLLETLLLNLVPYTPEDDAPIWEVPPLRLGDLEGARTKWPLTGRTRVYTWPARGVRLLDEGDGVRFMGYGPGVEPLEATHRDPMVAQRLDAKGNLLVLRLSEERSFWRDFSAMLPRQGGKVAATLEHAENLQGELEDEGLEGRITLRVLGQVSDQAKVLDIRREVYPLPSGLLTPKAEENLEKALKMAEELGQGLKHLAQEVAKAVVGERDSPYLEELTKLANSLPLERLYWHALDGAFPRFFARVEEEASLDLWREALRGAALEAWKATRRFLGTGARHLKALAQGEQEFGRLLGEL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Immune system
molecule keywords CasA
publication title Crystal Structure of the Largest Subunit of a Bacterial RNA-guided Immune Complex and Its Role in DNA Target Binding.
pubmed doi rcsb
source organism Thermus thermophilus
total genus 158
structure length 473
sequence length 492
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-05-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09481 CRISPR_Cse1 CRISPR-associated protein Cse1 (CRISPR_cse1)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.132.100 Mainly Alpha Orthogonal Bundle Topoisomerase I; Chain A, domain 4 Topoisomerase I; Chain A, domain 4 4f3eA02
4EJ3A 4H3TA 4F3EA 4AN8A 3WVOA
chains in the Genus database with same CATH superfamily
4D3ZA 1ZYRD 2B63A 4D3YA 1TWCA 4OYDB 5CQGA 1SMYD 5MLC9 3GTQA 3K57A 1SC7A 4C2MA 1WQHA 4F3EA 1SEUA 2CW0D 1K4TA 2NVYA 3GTJA 4IP8A 2B9SB 3LHPS 1Y698 1A31A 3K59A 2R92A 3P9AA 1R5ZA 1LPQA 2R4GA 4AYBA 1A36A 1WQFA 4LMOA 4JLRC 1EJ9A 4KB4A 3K5OA 1RRJA 4IP9A 4QIWA 2O5JD 1I3QA 1TGOA 3IAYA 2A6ED 1HQMD 3MAQA 4FXDA 3GTKA 1Y1VA 1R49A 1WQGA 3K58A 1WCMA 1MIUA 1I50A 2A6HD 3GTOA 4AHCA 2Y0SA 3KYLA 1GE9A 3SJRA 2NVXA 1TWAA 3LF9A 4QCLA 2E2IA 4FYDA 4KC6A 3GTGA 1TWFA 1YNND 4L8IA 2A68D 3DU6A 5C9HA 4GFQA 2JA7A 4NOMA 3HKZA 4EJ3A 1RR8C 2JA5A 2WAQA 4KAWX 1Q8IA 1SFOA 3WVOA 1TL8A 4H3TA 4NOKA 1NH3A 1ISEA 1EH1A 2PMZA 2E2HA 1A35A 5JSBB 4Q5VA 1K83A 3H0GA 2BE5D 1TWGA 4AN8A 1DD5A 1IW7D 3K5NA 4NOLA 1T8IA 1Y1WA 3DU5A 2R93A 2VUMA 1R9TA 2R7ZA 5JSNB 3K5LA 2F4QA 3GTMA 1TWHA 4O26A 1IS1A 1EK8A 2A69D 4FGUA 3GTLA 4KB2A 3K5MA 4KDDA 1YNJD 2YU9A 3CQZA 2WB1A 1K4SA 2JA6A 3GTPA 1I6VD 4Q5GA 3FKIA 1V9MA 3M4AA
chains in the Genus database with same CATH topology
4D3ZA 1ZYRD 2B63A 4D3YA 1TWCA 4OYDB 5CQGA 1SMYD 5MLC9 3GTQA 3K57A 1SC7A 4C2MA 1WQHA 4F3EA 1SEUA 2CW0D 1K4TA 2NVYA 3GTJA 4IP8A 2B9SB 3LHPS 1Y698 1A31A 3K59A 2R92A 3P9AA 1R5ZA 1LPQA 2R4GA 4AYBA 1A36A 1WQFA 4LMOA 4JLRC 1EJ9A 4KB4A 3K5OA 1RRJA 4IP9A 4QIWA 2O5JD 1I3QA 1TGOA 3IAYA 2A6ED 1HQMD 3MAQA 4FXDA 3GTKA 1Y1VA 1R49A 1WQGA 3K58A 1WCMA 1MIUA 1I50A 2A6HD 3GTOA 4AHCA 2Y0SA 3KYLA 1GE9A 3SJRA 2NVXA 1TWAA 3LF9A 4QCLA 2E2IA 4FYDA 4KC6A 3GTGA 1TWFA 1YNND 4L8IA 2A68D 3DU6A 5C9HA 4GFQA 2JA7A 4NOMA 3HKZA 4EJ3A 1RR8C 2JA5A 2WAQA 4KAWX 1Q8IA 1SFOA 3WVOA 1TL8A 4H3TA 4NOKA 1NH3A 1ISEA 1EH1A 2PMZA 2E2HA 1A35A 5JSBB 4Q5VA 1K83A 3H0GA 2BE5D 1TWGA 4AN8A 1DD5A 1IW7D 3K5NA 4NOLA 1T8IA 1Y1WA 3DU5A 2R93A 2VUMA 1R9TA 2R7ZA 5JSNB 3K5LA 2F4QA 3GTMA 1TWHA 4O26A 1IS1A 1EK8A 2A69D 4FGUA 3GTLA 4KB2A 3K5MA 4KDDA 1YNJD 2YU9A 3CQZA 2WB1A 1K4SA 2JA6A 3GTPA 1I6VD 4Q5GA 3FKIA 1V9MA 3M4AA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4EJ3 A;  4H3T A;  4F3E A;  4AN8 A;  3WVO A; 
#chains in the Genus database with same CATH topology
 4D3Z A;  1ZYR D;  2B63 A;  4D3Y A;  1TWC A;  4OYD B;  5CQG A;  1SMY D;  5MLC 9;  3GTQ A;  3K57 A;  1SC7 A;  4C2M A;  1WQH A;  4F3E A;  1SEU A;  2CW0 D;  1K4T A;  2NVY A;  3GTJ A;  4IP8 A;  2B9S B;  3LHP S;  1Y69 8;  1A31 A;  3K59 A;  2R92 A;  3P9A A;  1R5Z A;  1LPQ A;  2R4G A;  4AYB A;  1A36 A;  1WQF A;  4LMO A;  4JLR C;  1EJ9 A;  4KB4 A;  3K5O A;  1RRJ A;  4IP9 A;  4QIW A;  2O5J D;  1I3Q A;  1TGO A;  3IAY A;  2A6E D;  1HQM D;  3MAQ A;  4FXD A;  3GTK A;  1Y1V A;  1R49 A;  1WQG A;  3K58 A;  1WCM A;  1MIU A;  1I50 A;  2A6H D;  3GTO A;  4AHC A;  2Y0S A;  3KYL A;  1GE9 A;  3SJR A;  2NVX A;  1TWA A;  3LF9 A;  4QCL A;  2E2I A;  4FYD A;  4KC6 A;  3GTG A;  1TWF A;  1YNN D;  4L8I A;  2A68 D;  3DU6 A;  5C9H A;  4GFQ A;  2JA7 A;  4NOM A;  3HKZ A;  4EJ3 A;  1RR8 C;  2JA5 A;  2WAQ A;  4KAW X;  1Q8I A;  1SFO A;  3WVO A;  1TL8 A;  4H3T A;  4NOK A;  1NH3 A;  1ISE A;  1EH1 A;  2PMZ A;  2E2H A;  1A35 A;  5JSB B;  4Q5V A;  1K83 A;  3H0G A;  2BE5 D;  1TWG A;  4AN8 A;  1DD5 A;  1IW7 D;  3K5N A;  4NOL A;  1T8I A;  1Y1W A;  3DU5 A;  2R93 A;  2VUM A;  1R9T A;  2R7Z A;  5JSN B;  3K5L A;  2F4Q A;  3GTM A;  1TWH A;  4O26 A;  1IS1 A;  1EK8 A;  2A69 D;  4FGU A;  3GTL A;  4KB2 A;  3K5M A;  4KDD A;  1YNJ D;  2YU9 A;  3CQZ A;  2WB1 A;  1K4S A;  2JA6 A;  3GTP A;  1I6V D;  4Q5G A;  3FKI A;  1V9M A;  3M4A A; 
#chains in the Genus database with same CATH homology
 4D3Z A;  1ZYR D;  2B63 A;  4D3Y A;  1TWC A;  4OYD B;  5CQG A;  1SMY D;  5MLC 9;  3GTQ A;  3K57 A;  1SC7 A;  4C2M A;  1WQH A;  4F3E A;  1SEU A;  2CW0 D;  1K4T A;  2NVY A;  3GTJ A;  4IP8 A;  2B9S B;  3LHP S;  1Y69 8;  1A31 A;  3K59 A;  2R92 A;  3P9A A;  1R5Z A;  1LPQ A;  2R4G A;  4AYB A;  1A36 A;  1WQF A;  4LMO A;  4JLR C;  1EJ9 A;  4KB4 A;  3K5O A;  1RRJ A;  4IP9 A;  4QIW A;  2O5J D;  1I3Q A;  1TGO A;  3IAY A;  2A6E D;  1HQM D;  3MAQ A;  4FXD A;  3GTK A;  1Y1V A;  1R49 A;  1WQG A;  3K58 A;  1WCM A;  1MIU A;  1I50 A;  2A6H D;  3GTO A;  4AHC A;  2Y0S A;  3KYL A;  1GE9 A;  3SJR A;  2NVX A;  1TWA A;  3LF9 A;  4QCL A;  2E2I A;  4FYD A;  4KC6 A;  3GTG A;  1TWF A;  1YNN D;  4L8I A;  2A68 D;  3DU6 A;  5C9H A;  4GFQ A;  2JA7 A;  4NOM A;  3HKZ A;  4EJ3 A;  1RR8 C;  2JA5 A;  2WAQ A;  4KAW X;  1Q8I A;  1SFO A;  3WVO A;  1TL8 A;  4H3T A;  4NOK A;  1NH3 A;  1ISE A;  1EH1 A;  2PMZ A;  2E2H A;  1A35 A;  5JSB B;  4Q5V A;  1K83 A;  3H0G A;  2BE5 D;  1TWG A;  4AN8 A;  1DD5 A;  1IW7 D;  3K5N A;  4NOL A;  1T8I A;  1Y1W A;  3DU5 A;  2R93 A;  2VUM A;  1R9T A;  2R7Z A;  5JSN B;  3K5L A;  2F4Q A;  3GTM A;  1TWH A;  4O26 A;  1IS1 A;  1EK8 A;  2A69 D;  4FGU A;  3GTL A;  4KB2 A;  3K5M A;  4KDD A;  1YNJ D;  2YU9 A;  3CQZ A;  2WB1 A;  1K4S A;  2JA6 A;  3GTP A;  1I6V D;  4Q5G A;  3FKI A;  1V9M A;  3M4A A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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