4FZOA

Crystal structure of the apo-form uranyl binding protein
Total Genus 37
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
37
sequence length
82
structure length
82
Chain Sequence
SNALDCRERIEKDLEDLEKELMEMKSIKLSDDEEAVVERALNYRDDSVYYLEKGDHITSFGCITYAEGLTDSLRMLHRIIEG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Unknown function
molecule keywords uranyl binding protein
publication title A protein engineered to bind uranyl selectively and with femtomolar affinity.
pubmed doi rcsb
source organism Methanothermobacter thermautotrophicus
total genus 37
structure length 82
sequence length 82
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-07-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04010 DUF357 Protein of unknown function (DUF357)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.90 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 AF1782-like 4fzoA00
4FZPA 2YLAA 2JNKA 4AZCB 4AZHA 2YL8A 2YLLA 2YL9A 4AZIA 2YL5A 4AZGA 2PMRA 4AZBA 4FZOA 3RPMA 4AZCA 2OO2A 2YL6A 2OZNB 4AZ6A 4AZ7A 4AZ5A
chains in the Genus database with same CATH superfamily
3EJPA 4AZIA 3D2EA 3CZSA 2NCZA 2Q12A 2JNSA 4EZRA 4EZZA 5E84A 3SOGA 4IM3A 2F1AA 3G9GA 4I1QA 3HAHA 2Q13A 1UPXA 1SU8A 2F18A 4R5KA 4AZCA 3BVTA 2YIVX 2OZNB 2EX3B 3Q84A 1DKYA 4AKVA 4AZHA 3GI7A 2N3KA 2YL5A 2EFLA 2YIAA 3DX4A 2YL6A 3DPOA 3BUPA 1I4LA 3PLTA 4WPEA 4AZ6A 2WYHA 3BVXA 3DX1A 3CKDA 4KIKA 4NSWA 4EZUA 1X03A 2YL8A 4EZWA 2WINM 4WPCA 2ND1A 1TQTA 3D52A 4UDXX 2QXLA 2EWFA 1GNTA 2ZXQA 5FIGA 3DYTA 3DPQA 2OW6A 3O3NB 1O7DB 4AZBA 4DCNC 3DX0A 1TQUA 2GF4A 3D51A 4G6QA 4AZ5A 1OA1A 1R5EA 2ALWA 2JNKA 3ZEDA 2QFFA 3BVUA 2YL9A 3ERCC 1OAOA 3QWEA 3BUBA 1QWUA 1OA0A 2X3XA 4R5IA 5FLEX 4FM3A 2KHOA 4NQIA 2RAIA 1YWMA 3DPPA 3ACOA 3CV5A 2C08A 2ELBA 4H8SA 4IWPA 4JNEA 3T49A 1R34A 3D4ZA 1I4TA 4EZNA 4AVMA 1Y2OA 3HAIA 3B53X 4JWIA 4IWQA 3DDFA 3D2FA 1GN9A 3LVTA 4AZCB 1E9VA 2EFKA 3O3OB 4UDYX 2PMRA 3KAVA 4JWCA 4E81A 2WYIA 2OO2A 3D50A 1LQ7A 3F7WA 4JLCA 1E1DA 4JWDA 1SU7A 2OBLA 4EZTA 3CAZA 3O3MB 4E3CA 2GA9D 1HWWA 3EJUA 2X5CA 3I39X 4FZPA 2LM0A 2F7PA 3L3PA 2YKTA 2YI9A 4H6HA 3DX2A 3ER9B 4DYLA 3EJTA 3CZNA 3I2WA 4HYBA 3BUIA 2YIBA 2Z8YA 4KIKB 3OHXM 1O7DC 1W9MA 1QWNA 1E2UA 3CVRA 3T46A 3BUQA 1TQWA 4H6IA 4EZSA 2OW7A 4FZSA 3BVWA 4AZGA 4F00A 1WDZA 2RAKA 2D1LA 5C5BA 2FYVA 3I01A 2F7OA 3T4AG 4PO2A 4EZOA 1QX1A 3OK8A 3HAJA 3T47A 1ZYLA 2YLAA 3KAWA 4IM2A 2QKWA 1URUA 2YLLA 2RAJA 4NPHA 2YI8A 3SYVA 3EJRA 4HR1A 2X3VA 1U00A 3VEAA 4B9QA 4FZOA 1TQSA 1GNLA 3UITA 2ND0A 4IM0A 2D4CA 3LMFA 3C7NA 1HXKA 4HR1B 4HY9A 3RV1A 1JQKA 3QA8A 3M3WA 4AZ7A 5TKYA 2F7RA 3VEBA 2PY6A 3T48A 3FD9A 2F1BA 3Q0KA 4EZVA 3ER8C 4BNEA 1HTYA 2V0OA 4ATMA 1SU6A 2LXYA 3OWGA 1DKXA 3QNIA 1DKZA 2Z0OA 3BUDA 2OBMA 2Z0VA 3A98A 1R33A 3LLLA 2O0I1 3BVVA 4F01A 4JNFA 2X3WA 3DDGA 1TQVA 1I49A 4EZPA 2GAFD 3VKHA 1X04A 3B51X 3QE6A 2Z0NA 2F7QA 4R5GA 3RPMA 1MJGA 3ABHA 3D4YA 4M0MA 1PS3A 2MI7A 3DX3A 4IWOA 1I4DA 3L3OM 2FICA 3EJQA 1SUFA 5C5BB 4JWEA 4R5JA 3BLBA 2RT6A 4JN4A 4EZXA 5KBPA 4EZYA 1ZWWA 3KDRA 4JL9A 3RV0A 3I04A 3QNJA 4R5LA 4IW0A 3EJSA 4D8JA 3B52X 4EZQA
chains in the Genus database with same CATH topology
4FZPA 2YLAA 2JNKA 4AZCB 4AZHA 2YL8A 2YLLA 2YL9A 4AZIA 2YL5A 4AZGA 2PMRA 4AZBA 4FZOA 3RPMA 4AZCA 2OO2A 2YL6A 2OZNB 4AZ6A 4AZ7A 4AZ5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4FZP A;  2YLA A;  2JNK A;  4AZC B;  4AZH A;  2YL8 A;  2YLL A;  2YL9 A;  4AZI A;  2YL5 A;  4AZG A;  2PMR A;  4AZB A;  4FZO A;  3RPM A;  4AZC A;  2OO2 A;  2YL6 A;  2OZN B;  4AZ6 A;  4AZ7 A;  4AZ5 A; 
#chains in the Genus database with same CATH topology
 3EJP A;  4AZI A;  3D2E A;  3CZS A;  2NCZ A;  2Q12 A;  2JNS A;  4EZR A;  4EZZ A;  5E84 A;  3SOG A;  4IM3 A;  2F1A A;  3G9G A;  4I1Q A;  3HAH A;  2Q13 A;  1UPX A;  1SU8 A;  2F18 A;  4R5K A;  4AZC A;  3BVT A;  2YIV X;  2OZN B;  2EX3 B;  3Q84 A;  1DKY A;  4AKV A;  4AZH A;  3GI7 A;  2N3K A;  2YL5 A;  2EFL A;  2YIA A;  3DX4 A;  2YL6 A;  3DPO A;  3BUP A;  1I4L A;  3PLT A;  4WPE A;  4AZ6 A;  2WYH A;  3BVX A;  3DX1 A;  3CKD A;  4KIK A;  4NSW A;  4EZU A;  1X03 A;  2YL8 A;  4EZW A;  2WIN M;  4WPC A;  2ND1 A;  1TQT A;  3D52 A;  4UDX X;  2QXL A;  2EWF A;  1GNT A;  2ZXQ A;  5FIG A;  3DYT A;  3DPQ A;  2OW6 A;  3O3N B;  1O7D B;  4AZB A;  4DCN C;  3DX0 A;  1TQU A;  2GF4 A;  3D51 A;  4G6Q A;  4AZ5 A;  1OA1 A;  1R5E A;  2ALW A;  2JNK A;  3ZED A;  2QFF A;  3BVU A;  2YL9 A;  3ERC C;  1OAO A;  3QWE A;  3BUB A;  1QWU A;  1OA0 A;  2X3X A;  4R5I A;  5FLE X;  4FM3 A;  2KHO A;  4NQI A;  2RAI A;  1YWM A;  3DPP A;  3ACO A;  3CV5 A;  2C08 A;  2ELB A;  4H8S A;  4IWP A;  4JNE A;  3T49 A;  1R34 A;  3D4Z A;  1I4T A;  4EZN A;  4AVM A;  1Y2O A;  3HAI A;  3B53 X;  4JWI A;  4IWQ A;  3DDF A;  3D2F A;  1GN9 A;  3LVT A;  4AZC B;  1E9V A;  2EFK A;  3O3O B;  4UDY X;  2PMR A;  3KAV A;  4JWC A;  4E81 A;  2WYI A;  2OO2 A;  3D50 A;  1LQ7 A;  3F7W A;  4JLC A;  1E1D A;  4JWD A;  1SU7 A;  2OBL A;  4EZT A;  3CAZ A;  3O3M B;  4E3C A;  2GA9 D;  1HWW A;  3EJU A;  2X5C A;  3I39 X;  4FZP A;  2LM0 A;  2F7P A;  3L3P A;  2YKT A;  2YI9 A;  4H6H A;  3DX2 A;  3ER9 B;  4DYL A;  3EJT A;  3CZN A;  3I2W A;  4HYB A;  3BUI A;  2YIB A;  2Z8Y A;  4KIK B;  3OHX M;  1O7D C;  1W9M A;  1QWN A;  1E2U A;  3CVR A;  3T46 A;  3BUQ A;  1TQW A;  4H6I A;  4EZS A;  2OW7 A;  4FZS A;  3BVW A;  4AZG A;  4F00 A;  1WDZ A;  2RAK A;  2D1L A;  5C5B A;  2FYV A;  3I01 A;  2F7O A;  3T4A G;  4PO2 A;  4EZO A;  1QX1 A;  3OK8 A;  3HAJ A;  3T47 A;  1ZYL A;  2YLA A;  3KAW A;  4IM2 A;  2QKW A;  1URU A;  2YLL A;  2RAJ A;  4NPH A;  2YI8 A;  3SYV A;  3EJR A;  4HR1 A;  2X3V A;  1U00 A;  3VEA A;  4B9Q A;  4FZO A;  1TQS A;  1GNL A;  3UIT A;  2ND0 A;  4IM0 A;  2D4C A;  3LMF A;  3C7N A;  1HXK A;  4HR1 B;  4HY9 A;  3RV1 A;  1JQK A;  3QA8 A;  3M3W A;  4AZ7 A;  5TKY A;  2F7R A;  3VEB A;  2PY6 A;  3T48 A;  3FD9 A;  2F1B A;  3Q0K A;  4EZV A;  3ER8 C;  4BNE A;  1HTY A;  2V0O A;  4ATM A;  1SU6 A;  2LXY A;  3OWG A;  1DKX A;  3QNI A;  1DKZ A;  2Z0O A;  3BUD A;  2OBM A;  2Z0V A;  3A98 A;  1R33 A;  3LLL A;  2O0I 1;  3BVV A;  4F01 A;  4JNF A;  2X3W A;  3DDG A;  1TQV A;  1I49 A;  4EZP A;  2GAF D;  3VKH A;  1X04 A;  3B51 X;  3QE6 A;  2Z0N A;  2F7Q A;  4R5G A;  3RPM A;  1MJG A;  3ABH A;  3D4Y A;  4M0M A;  1PS3 A;  2MI7 A;  3DX3 A;  4IWO A;  1I4D A;  3L3O M;  2FIC A;  3EJQ A;  1SUF A;  5C5B B;  4JWE A;  4R5J A;  3BLB A;  2RT6 A;  4JN4 A;  4EZX A;  5KBP A;  4EZY A;  1ZWW A;  3KDR A;  4JL9 A;  3RV0 A;  3I04 A;  3QNJ A;  4R5L A;  4IW0 A;  3EJS A;  4D8J A;  3B52 X;  4EZQ A; 
#chains in the Genus database with same CATH homology
 4FZP A;  2YLA A;  2JNK A;  4AZC B;  4AZH A;  2YL8 A;  2YLL A;  2YL9 A;  4AZI A;  2YL5 A;  4AZG A;  2PMR A;  4AZB A;  4FZO A;  3RPM A;  4AZC A;  2OO2 A;  2YL6 A;  2OZN B;  4AZ6 A;  4AZ7 A;  4AZ5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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