4FZSA

Structure of human snx1 bar domain
Total Genus 93
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
93
sequence length
209
structure length
209
Chain Sequence
SDIWFEEKLQEVECEEQRLRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDNTALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRWQDAQATLQKKREAEARLLWANKPDKLQQAKDEILEWESRVTQYERDFERISTVVRKEVIRFEKEKSKDFKNHVIKYLETLLYSQQQLAKYWEA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Protein transport
molecule keywords Sorting nexin-1
publication title Molecular insight into vesicle-to-tubule membrane remodeling by SNX-BAR proteins
rcsb
source organism Homo sapiens
total genus 93
structure length 209
sequence length 209
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-07-07
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.60 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Arfaptin homology (AH) domain/BAR domain 4fzsA00
3LLLA 3HAHA 1WDZA 2RAJA 3SYVA 4BNEA 2D1LA 1X03A 2X3VA 2Z0VA 3M3WA 2V0OA 3Q0KA 2RAKA 3G9GA 4AKVA 1I4DA 2Z0OA 5C5BB 4AVMA 3ABHA 2Z0NA 3ACOA 4DCNC 2ELBA 4H8SA 4FZSA 2EFLA 1URUA 2C08A 2X3WA 3SOGA 2D4CA 2FICA 2RAIA 3HAJA 4WPCA 1X04A 3OK8A 1Y2OA 4NSWA 3DYTA 4DYLA 3QWEA 3PLTA 2Q13A 1I4LA 4I1QA 4WPEA 5C5BA 3I2WA 2Q12A 4NQIA 1ZWWA 2X3XA 3CAZA 3HAIA 3QE6A 3Q84A 4ATMA 3QNIA 1I49A 2YKTA 2EFKA 1I4TA
chains in the Genus database with same CATH superfamily
3DPPA 4NPHA 2LM0A 2QFFA 1SU6A 2D1LA 3D2FA 4AZ5A 2YIAA 4AZ7A 3LMFA 1HXKA 2Z0NA 3D50A 4E3CA 2X3WA 3DX0A 4NSWA 1TQWA 3EJUA 4KIKB 4H6HA 4EZTA 4NQIA 2YIBA 1R5EA 3SYVA 3C7NA 2YL5A 3L3OM 4IM0A 4EZOA 4FZSA 1QWUA 3SOGA 2C08A 4EZNA 2FICA 1W9MA 4JNFA 1QWNA 3BUDA 2MI7A 3EJSA 5KBPA 3KDRA 3DPQA 2QKWA 1WDZA 4EZWA 3EJTA 4M0MA 2V0OA 3BVXA 4FM3A 1TQTA 3T47A 2NCZA 4AZ6A 2RAIA 1DKZA 1X04A 2F7RA 3T46A 3D4YA 4I1QA 4EZZA 2PY6A 3CAZA 2EFKA 3ZEDA 2YL8A 4FZOA 1E9VA 3ACOA 2OBMA 4H8SA 2O0I1 1Y2OA 3RV0A 1JQKA 2OW7A 2QXLA 3A98A 3OWGA 2YKTA 4IW0A 2F7PA 1OA1A 4IWQA 3Q0KA 3DX2A 4AZIA 4F01A 2OW6A 4IM2A 3OHXM 3BUPA 2YIVX 2YL9A 2PMRA 2KHOA 2F7OA 3D2EA 4AZCB 3G9GA 3VEAA 3O3MB 1GNTA 4JNEA 3ABHA 1DKXA 1DKYA 5TKYA 1HTYA 4HY9A 4IWOA 3I01A 4WPEA 3KAWA 2Q12A 2X3XA 3QE6A 4UDYX 5FIGA 2ZXQA 3B51X 2WINM 4AZHA 4EZXA 4HR1B 2F1AA 5E84A 5C5BB 2ELBA 3D4ZA 2EWFA 4JWIA 3DDGA 3I2WA 4D8JA 4JLCA 3BVTA 3BUIA 3ERCC 4EZQA 1TQUA 2Z0OA 3T4AG 3VKHA 4IWPA 3EJPA 1URUA 3CZSA 1O7DB 4EZUA 1TQSA 3GI7A 3DX3A 2RAJA 4R5JA 2X3VA 2GAFD 1I4DA 3LVTA 1HWWA 3DPOA 2D4CA 2Z8YA 1R34A 3DYTA 1OA0A 4R5GA 2OZNB 4F00A 2LXYA 1ZWWA 3QNIA 1E1DA 3F7WA 4R5KA 3VEBA 4EZVA 3LLLA 3KAVA 3I39X 1U00A 4JWCA 4EZSA 3BUBA 3OK8A 1GNLA 2WYHA 2YI9A 4B9QA 3Q84A 1I49A 1UPXA 2YL6A 2WYIA 3CKDA 3T48A 4HYBA 1O7DC 4PO2A 3O3NB 1ZYLA 2YLLA 4E81A 3BUQA 1OAOA 4H6IA 2ND0A 2JNSA 4G6QA 1E2UA 3ER8C 1LQ7A 4AKVA 1GN9A 3UITA 2EX3B 4AZCA 2EFLA 4EZYA 3HAJA 4WPCA 2OO2A 4R5LA 3ER9B 3RV1A 5FLEX 3BLBA 3RPMA 3FD9A 2FYVA 4KIKA 2F1BA 3D51A 2RAKA 1YWMA 1SUFA 4HR1A 3QA8A 3L3PA 3BVUA 3QWEA 5C5BA 2F7QA 3EJQA 3HAIA 4ATMA 1SU7A 3HAHA 4JWDA 4JWEA 4JN4A 4BNEA 3BVWA 1X03A 2Z0VA 4R5IA 3M3WA 4JL9A 3BVVA 3CVRA 3I04A 3B53X 2YI8A 3CZNA 4AZGA 4DYLA 3O3OB 4FZPA 1I4LA 2Q13A 2ALWA 4UDXX 4EZPA 2ND1A 2GF4A 3D52A 1SU8A 2RT6A 3DX4A 2F18A 2YLAA 4AVMA 1MJGA 3CV5A 1QX1A 1PS3A 3PLTA 3EJRA 1I4TA 4EZRA 4AZBA 3T49A 3DX1A 2N3KA 3B52X 4IM3A 4DCNC 1TQVA 2GA9D 2JNKA 3DDFA 3QNJA 2OBLA 2X5CA 1R33A
chains in the Genus database with same CATH topology
3LLLA 3HAHA 1WDZA 2RAJA 3SYVA 4BNEA 2D1LA 1X03A 2X3VA 2Z0VA 3M3WA 2V0OA 3Q0KA 2RAKA 3G9GA 4AKVA 1I4DA 2Z0OA 5C5BB 4AVMA 3ABHA 2Z0NA 3ACOA 4DCNC 2ELBA 4H8SA 4FZSA 2EFLA 1URUA 2C08A 2X3WA 3SOGA 2D4CA 2FICA 2RAIA 3HAJA 4WPCA 1X04A 3OK8A 1Y2OA 4NSWA 3DYTA 4DYLA 3QWEA 3PLTA 2Q13A 1I4LA 4I1QA 4WPEA 5C5BA 3I2WA 2Q12A 4NQIA 1ZWWA 2X3XA 3CAZA 3HAIA 3QE6A 3Q84A 4ATMA 3QNIA 1I49A 2YKTA 2EFKA 1I4TA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3LLL A;  3HAH A;  1WDZ A;  2RAJ A;  3SYV A;  4BNE A;  2D1L A;  1X03 A;  2X3V A;  2Z0V A;  3M3W A;  2V0O A;  3Q0K A;  2RAK A;  3G9G A;  4AKV A;  1I4D A;  2Z0O A;  5C5B B;  4AVM A;  3ABH A;  2Z0N A;  3ACO A;  4DCN C;  2ELB A;  4H8S A;  4FZS A;  2EFL A;  1URU A;  2C08 A;  2X3W A;  3SOG A;  2D4C A;  2FIC A;  2RAI A;  3HAJ A;  4WPC A;  1X04 A;  3OK8 A;  1Y2O A;  4NSW A;  3DYT A;  4DYL A;  3QWE A;  3PLT A;  2Q13 A;  1I4L A;  4I1Q A;  4WPE A;  5C5B A;  3I2W A;  2Q12 A;  4NQI A;  1ZWW A;  2X3X A;  3CAZ A;  3HAI A;  3QE6 A;  3Q84 A;  4ATM A;  3QNI A;  1I49 A;  2YKT A;  2EFK A;  1I4T A; 
#chains in the Genus database with same CATH topology
 3DPP A;  4NPH A;  2LM0 A;  2QFF A;  1SU6 A;  2D1L A;  3D2F A;  4AZ5 A;  2YIA A;  4AZ7 A;  3LMF A;  1HXK A;  2Z0N A;  3D50 A;  4E3C A;  2X3W A;  3DX0 A;  4NSW A;  1TQW A;  3EJU A;  4KIK B;  4H6H A;  4EZT A;  4NQI A;  2YIB A;  1R5E A;  3SYV A;  3C7N A;  2YL5 A;  3L3O M;  4IM0 A;  4EZO A;  4FZS A;  1QWU A;  3SOG A;  2C08 A;  4EZN A;  2FIC A;  1W9M A;  4JNF A;  1QWN A;  3BUD A;  2MI7 A;  3EJS A;  5KBP A;  3KDR A;  3DPQ A;  2QKW A;  1WDZ A;  4EZW A;  3EJT A;  4M0M A;  2V0O A;  3BVX A;  4FM3 A;  1TQT A;  3T47 A;  2NCZ A;  4AZ6 A;  2RAI A;  1DKZ A;  1X04 A;  2F7R A;  3T46 A;  3D4Y A;  4I1Q A;  4EZZ A;  2PY6 A;  3CAZ A;  2EFK A;  3ZED A;  2YL8 A;  4FZO A;  1E9V A;  3ACO A;  2OBM A;  4H8S A;  2O0I 1;  1Y2O A;  3RV0 A;  1JQK A;  2OW7 A;  2QXL A;  3A98 A;  3OWG A;  2YKT A;  4IW0 A;  2F7P A;  1OA1 A;  4IWQ A;  3Q0K A;  3DX2 A;  4AZI A;  4F01 A;  2OW6 A;  4IM2 A;  3OHX M;  3BUP A;  2YIV X;  2YL9 A;  2PMR A;  2KHO A;  2F7O A;  3D2E A;  4AZC B;  3G9G A;  3VEA A;  3O3M B;  1GNT A;  4JNE A;  3ABH A;  1DKX A;  1DKY A;  5TKY A;  1HTY A;  4HY9 A;  4IWO A;  3I01 A;  4WPE A;  3KAW A;  2Q12 A;  2X3X A;  3QE6 A;  4UDY X;  5FIG A;  2ZXQ A;  3B51 X;  2WIN M;  4AZH A;  4EZX A;  4HR1 B;  2F1A A;  5E84 A;  5C5B B;  2ELB A;  3D4Z A;  2EWF A;  4JWI A;  3DDG A;  3I2W A;  4D8J A;  4JLC A;  3BVT A;  3BUI A;  3ERC C;  4EZQ A;  1TQU A;  2Z0O A;  3T4A G;  3VKH A;  4IWP A;  3EJP A;  1URU A;  3CZS A;  1O7D B;  4EZU A;  1TQS A;  3GI7 A;  3DX3 A;  2RAJ A;  4R5J A;  2X3V A;  2GAF D;  1I4D A;  3LVT A;  1HWW A;  3DPO A;  2D4C A;  2Z8Y A;  1R34 A;  3DYT A;  1OA0 A;  4R5G A;  2OZN B;  4F00 A;  2LXY A;  1ZWW A;  3QNI A;  1E1D A;  3F7W A;  4R5K A;  3VEB A;  4EZV A;  3LLL A;  3KAV A;  3I39 X;  1U00 A;  4JWC A;  4EZS A;  3BUB A;  3OK8 A;  1GNL A;  2WYH A;  2YI9 A;  4B9Q A;  3Q84 A;  1I49 A;  1UPX A;  2YL6 A;  2WYI A;  3CKD A;  3T48 A;  4HYB A;  1O7D C;  4PO2 A;  3O3N B;  1ZYL A;  2YLL A;  4E81 A;  3BUQ A;  1OAO A;  4H6I A;  2ND0 A;  2JNS A;  4G6Q A;  1E2U A;  3ER8 C;  1LQ7 A;  4AKV A;  1GN9 A;  3UIT A;  2EX3 B;  4AZC A;  2EFL A;  4EZY A;  3HAJ A;  4WPC A;  2OO2 A;  4R5L A;  3ER9 B;  3RV1 A;  5FLE X;  3BLB A;  3RPM A;  3FD9 A;  2FYV A;  4KIK A;  2F1B A;  3D51 A;  2RAK A;  1YWM A;  1SUF A;  4HR1 A;  3QA8 A;  3L3P A;  3BVU A;  3QWE A;  5C5B A;  2F7Q A;  3EJQ A;  3HAI A;  4ATM A;  1SU7 A;  3HAH A;  4JWD A;  4JWE A;  4JN4 A;  4BNE A;  3BVW A;  1X03 A;  2Z0V A;  4R5I A;  3M3W A;  4JL9 A;  3BVV A;  3CVR A;  3I04 A;  3B53 X;  2YI8 A;  3CZN A;  4AZG A;  4DYL A;  3O3O B;  4FZP A;  1I4L A;  2Q13 A;  2ALW A;  4UDX X;  4EZP A;  2ND1 A;  2GF4 A;  3D52 A;  1SU8 A;  2RT6 A;  3DX4 A;  2F18 A;  2YLA A;  4AVM A;  1MJG A;  3CV5 A;  1QX1 A;  1PS3 A;  3PLT A;  3EJR A;  1I4T A;  4EZR A;  4AZB A;  3T49 A;  3DX1 A;  2N3K A;  3B52 X;  4IM3 A;  4DCN C;  1TQV A;  2GA9 D;  2JNK A;  3DDF A;  3QNJ A;  2OBL A;  2X5C A;  1R33 A; 
#chains in the Genus database with same CATH homology
 3LLL A;  3HAH A;  1WDZ A;  2RAJ A;  3SYV A;  4BNE A;  2D1L A;  1X03 A;  2X3V A;  2Z0V A;  3M3W A;  2V0O A;  3Q0K A;  2RAK A;  3G9G A;  4AKV A;  1I4D A;  2Z0O A;  5C5B B;  4AVM A;  3ABH A;  2Z0N A;  3ACO A;  4DCN C;  2ELB A;  4H8S A;  4FZS A;  2EFL A;  1URU A;  2C08 A;  2X3W A;  3SOG A;  2D4C A;  2FIC A;  2RAI A;  3HAJ A;  4WPC A;  1X04 A;  3OK8 A;  1Y2O A;  4NSW A;  3DYT A;  4DYL A;  3QWE A;  3PLT A;  2Q13 A;  1I4L A;  4I1Q A;  4WPE A;  5C5B A;  3I2W A;  2Q12 A;  4NQI A;  1ZWW A;  2X3X A;  3CAZ A;  3HAI A;  3QE6 A;  3Q84 A;  4ATM A;  3QNI A;  1I49 A;  2YKT A;  2EFK A;  1I4T A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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