4G0BA

Structure of native hct from coffea canephora
Total Genus 124
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
124
sequence length
434
structure length
421
Chain Sequence
MKIEVKESTMVRPAQETPGRNLWNSNVDLVVPNFHTPSVYFYRPTGSSNFFDAKVLKDALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDFAPTLELRRLIPAVDYSQGISSYALLVLQVTYFKCGGVSLGVGMRHHAADGFSGLHFINSWSDMARGLDVTLPPFIDRTLLRARDPPQPQFQHIEYQPPPALKTAVSIFKLTREQISALKAKSKEDGNTISYSSYEMLAGHVWRCACKARGLEVDQGTKLYIATDGRARLRPSLPPGYFGNVIFTATPIAIAGDLEFKPVWYAASKIHDALARMDNDYLRSALDYLELQPDLKALVRGAHTFKCPNLGITSWVRLPIHDADFGWGRPIFMGPGGIAYEGLSFILPSPTNDGSMSVAISLQGEHMKLFQSFLYDI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords Hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyltrans
publication title A structural basis for the biosynthesis of the major chlorogenic acids found in coffee.
pubmed doi rcsb
source organism Coffea canephora
total genus 124
structure length 421
sequence length 434
chains with identical sequence B
ec nomenclature ec 2.3.1.133: Shikimate O-hydroxycinnamoyltransferase.
pdb deposition date 2012-07-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02458 Transferase Transferase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 4g0bA02
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 4g0bA01
4KECA 1XL7A 2I9DA 3FP0A 2CLAA 5KJUA 3CLAA 2VSQA 1EACA 3B2SA 4JN5A 4N72A 3MAEA 2RKTA 1XMDA 4G22A 4KE4A 3U9FA 5FALA 2JGPA 5KJVA 2ZBAA 1EADA 1L5AA 3FOTA 5FANA 4HVMA 1DPBA 1EAEA 1Q9JA 2E1VA 1EAFA 1DPDA 1SCZA 2E1UA 2XR7A 4G0BA 5DUAA 1XL8A 2IHWA 3U9BA 2RKVA 2II4A 1EAAA 3L60A 1QCAA 2E1TA 1CLAA 5KJWA 1E2OA 1EABA 4G2MA 2II3A 5KJTA 2II5A 1CIAA 2BGHA 1DPCA 1NOCB 1XMCA 5T3EA 1C4TA 5DU9A 5KJSA 4CLAA 2XHGA 4JN3A 3B30A 1PD5A 1Q23A
chains in the Genus database with same CATH superfamily
2VSQA 2H3PA 4N72A 3MAEA 3U9FA 4EP9A 5FALA 2JGPA 1NDBA 5FANA 2H4TA 4G0BA 1EAFA 1XL8A 2IHWA 2FY2A 3U9BA 1EAAA 1CLAA 2H3WA 2II5A 5KJSA 3B30A 2I9DA 2CLAA 3CLAA 3B2SA 1XMDA 4EPHA 5KJVA 1EADA 2RCUA 1Q9JA 1DPDA 1SCZA 2E1TA 1E2OA 1S5OA 1CIAA 2BGHA 1C4TA 5DU9A 2XHGA 5KJWA 1PD5A 1NM8A 4KECA 1EACA 4KE4A 1L5AA 1DPBA 2XR7A 2E1VA 1T7OA 2RKVA 1EABA 2II3A 1DPCA 1NOCB 1XMCA 5T3EA 4JN3A 4HVMA 2FYOA 1XL7A 3FP0A 2FY4A 1T7QA 1T7NA 4JN5A 2RKTA 4G22A 2FY3A 1NDIA 2ZBAA 3FOTA 2FW3A 2FY5A 1EAEA 2E1UA 5DUAA 1T1UA 4EYWA 2II4A 1Q6XA 3L60A 1QCAA 1NDFA 2H3UA 4G2MA 5KJTA 2DEBA 4CLAA 5KJUA 1Q23A
chains in the Genus database with same CATH topology
4KECA 1XL7A 2I9DA 3FP0A 2CLAA 5KJUA 3CLAA 2VSQA 1EACA 3B2SA 4JN5A 4N72A 3MAEA 2RKTA 1XMDA 4G22A 4KE4A 3U9FA 5FALA 2JGPA 5KJVA 2ZBAA 1EADA 1L5AA 3FOTA 5FANA 4HVMA 1DPBA 1EAEA 1Q9JA 2E1VA 1EAFA 1DPDA 1SCZA 2E1UA 2XR7A 4G0BA 5DUAA 1XL8A 2IHWA 3U9BA 2RKVA 2II4A 1EAAA 3L60A 1QCAA 2E1TA 1CLAA 5KJWA 1E2OA 1EABA 4G2MA 2II3A 5KJTA 2II5A 1CIAA 2BGHA 1DPCA 1NOCB 1XMCA 5T3EA 1C4TA 5DU9A 5KJSA 4CLAA 2XHGA 4JN3A 3B30A 1PD5A 1Q23A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4KEC A;  1XL7 A;  2I9D A;  3FP0 A;  2CLA A;  5KJU A;  3CLA A;  2VSQ A;  1EAC A;  3B2S A;  4JN5 A;  4N72 A;  3MAE A;  2RKT A;  1XMD A;  4G22 A;  4KE4 A;  3U9F A;  5FAL A;  2JGP A;  5KJV A;  2ZBA A;  1EAD A;  1L5A A;  3FOT A;  5FAN A;  4HVM A;  1DPB A;  1EAE A;  1Q9J A;  2E1V A;  1EAF A;  1DPD A;  1SCZ A;  2E1U A;  2XR7 A;  4G0B A;  5DUA A;  1XL8 A;  2IHW A;  3U9B A;  2RKV A;  2II4 A;  1EAA A;  3L60 A;  1QCA A;  2E1T A;  1CLA A;  5KJW A;  1E2O A;  1EAB A;  4G2M A;  2II3 A;  5KJT A;  2II5 A;  1CIA A;  2BGH A;  1DPC A;  1NOC B;  1XMC A;  5T3E A;  1C4T A;  5DU9 A;  5KJS A;  4CLA A;  2XHG A;  4JN3 A;  3B30 A;  1PD5 A;  1Q23 A; 
#chains in the Genus database with same CATH topology
 2VSQ A;  2H3P A;  4N72 A;  3MAE A;  3U9F A;  4EP9 A;  5FAL A;  2JGP A;  1NDB A;  5FAN A;  2H4T A;  4G0B A;  1EAF A;  1XL8 A;  2IHW A;  2FY2 A;  3U9B A;  1EAA A;  1CLA A;  2H3W A;  2II5 A;  5KJS A;  3B30 A;  2I9D A;  2CLA A;  3CLA A;  3B2S A;  1XMD A;  4EPH A;  5KJV A;  1EAD A;  2RCU A;  1Q9J A;  1DPD A;  1SCZ A;  2E1T A;  1E2O A;  1S5O A;  1CIA A;  2BGH A;  1C4T A;  5DU9 A;  2XHG A;  5KJW A;  1PD5 A;  1NM8 A;  4KEC A;  1EAC A;  4KE4 A;  1L5A A;  1DPB A;  2XR7 A;  2E1V A;  1T7O A;  2RKV A;  1EAB A;  2II3 A;  1DPC A;  1NOC B;  1XMC A;  5T3E A;  4JN3 A;  4HVM A;  2FYO A;  1XL7 A;  3FP0 A;  2FY4 A;  1T7Q A;  1T7N A;  4JN5 A;  2RKT A;  4G22 A;  2FY3 A;  1NDI A;  2ZBA A;  3FOT A;  2FW3 A;  2FY5 A;  1EAE A;  2E1U A;  5DUA A;  1T1U A;  4EYW A;  2II4 A;  1Q6X A;  3L60 A;  1QCA A;  1NDF A;  2H3U A;  4G2M A;  5KJT A;  2DEB A;  4CLA A;  5KJU A;  1Q23 A; 
#chains in the Genus database with same CATH homology
 4KEC A;  1XL7 A;  2I9D A;  3FP0 A;  2CLA A;  5KJU A;  3CLA A;  2VSQ A;  1EAC A;  3B2S A;  4JN5 A;  4N72 A;  3MAE A;  2RKT A;  1XMD A;  4G22 A;  4KE4 A;  3U9F A;  5FAL A;  2JGP A;  5KJV A;  2ZBA A;  1EAD A;  1L5A A;  3FOT A;  5FAN A;  4HVM A;  1DPB A;  1EAE A;  1Q9J A;  2E1V A;  1EAF A;  1DPD A;  1SCZ A;  2E1U A;  2XR7 A;  4G0B A;  5DUA A;  1XL8 A;  2IHW A;  3U9B A;  2RKV A;  2II4 A;  1EAA A;  3L60 A;  1QCA A;  2E1T A;  1CLA A;  5KJW A;  1E2O A;  1EAB A;  4G2M A;  2II3 A;  5KJT A;  2II5 A;  1CIA A;  2BGH A;  1DPC A;  1NOC B;  1XMC A;  5T3E A;  1C4T A;  5DU9 A;  5KJS A;  4CLA A;  2XHG A;  4JN3 A;  3B30 A;  1PD5 A;  1Q23 A; 
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