4GYNA

The e142l mutant of the amidase from geobacillus pallidus
Total Genus 121
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
121
sequence length
340
structure length
340
Chain Sequence
MRHGDISSSHDTVGIAVVNYKMPRLHTKAEVIENAKKIADMVVGMKQGLPGMDLVVFPEYSTMGIMYDQDEMFATAASIPGEETAIFAEACKKADTWGVFSLTGEKHEDHPNKAPYNTLVLINNKGEIVQKYRKIIPWCPILGWYPGDTTYVTEGPKGLKISLIVCDDGNYPEIWRDCAMKGAELIVRCQGYMYPAKEQQIMMAKAMAWANNTYVAVANATGFDGVYSYFGHSAIIGFDGRTLGECGTEENGIQYAEVSISQIRDFRKNAQSQNHLFKLLHRGYTGLINSGEGDRGVAECPFDFYRTWVLDAEKARENVEKITRSTVGTAECPIQGIPNE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Aliphatic amidase
publication title The mechanism of the amidases: mutating the glutamate adjacent to the catalytic triad inactivates the enzyme due to substrate mispositioning.
pubmed doi rcsb
source organism Bacillus sp.
total genus 121
structure length 340
sequence length 340
ec nomenclature ec 3.5.1.4: Amidase.
pdb deposition date 2012-09-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00795 CN_hydrolase Carbon-nitrogen hydrolase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.110.10 Alpha Beta 4-Layer Sandwich Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase Carbon-nitrogen hydrolase 4gynA00
1F89A 4GYLA 1UF8A 4HG3A 2E2KA 1UF7A 4IZTA 3KLCA 1FO6A 2PLQA 5KHAA 2VHHA 3N05A 2DYUA 5JQNA 1UF4A 3IVZA 2W1VA 3SZGA 4CYFA 1UF5A 1J31A 2GGLA 3KI8A 2DYVA 3P8KA 4IZWA 4IZUA 5H8IA 5H8LA 3HKXA 2E11A 3SYTA 4KZFA 3IW3A 2VHIA 4GYNA 4HGDA 2UXYA 5H8JA 4H5UA 3SEZA 3ILVA 2GGKA 1EMSA 2E2LA 4F4HA 4IZSA 5H8KA 3SEQA 3WUYA 4LF0A 4CYGA 3SDBA 4IZVA 4HG5A 4CYYA 3DLAA 1ERZA
chains in the Genus database with same CATH superfamily
1F89A 4GYLA 1UF8A 4HG3A 2E2KA 1UF7A 4IZTA 3KLCA 1FO6A 2PLQA 5KHAA 2VHHA 3N05A 2DYUA 5JQNA 1UF4A 3IVZA 2W1VA 3SZGA 4CYFA 1UF5A 1J31A 2GGLA 3KI8A 2DYVA 3P8KA 4IZWA 4IZUA 5H8IA 5H8LA 3HKXA 2E11A 3SYTA 4KZFA 3IW3A 2VHIA 4GYNA 4HGDA 2UXYA 5H8JA 4H5UA 3SEZA 3ILVA 2GGKA 1EMSA 2E2LA 4F4HA 4IZSA 5H8KA 3SEQA 3WUYA 4LF0A 4CYGA 3SDBA 4IZVA 4HG5A 4CYYA 3DLAA 1ERZA
chains in the Genus database with same CATH topology
1F89A 4GYLA 1UF8A 4HG3A 2E2KA 1UF7A 4IZTA 3KLCA 1FO6A 2PLQA 5KHAA 2VHHA 3N05A 2DYUA 5JQNA 1UF4A 3IVZA 2W1VA 3SZGA 4CYFA 1UF5A 1J31A 2GGLA 3KI8A 2DYVA 3P8KA 4IZWA 4IZUA 5H8IA 5H8LA 3HKXA 2E11A 3SYTA 4KZFA 3IW3A 2VHIA 4GYNA 4HGDA 2UXYA 5H8JA 4H5UA 3SEZA 3ILVA 2GGKA 1EMSA 2E2LA 4F4HA 4IZSA 5H8KA 3SEQA 3WUYA 4LF0A 4CYGA 3SDBA 4IZVA 4HG5A 4CYYA 3DLAA 1ERZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1F89 A;  4GYL A;  1UF8 A;  4HG3 A;  2E2K A;  1UF7 A;  4IZT A;  3KLC A;  1FO6 A;  2PLQ A;  5KHA A;  2VHH A;  3N05 A;  2DYU A;  5JQN A;  1UF4 A;  3IVZ A;  2W1V A;  3SZG A;  4CYF A;  1UF5 A;  1J31 A;  2GGL A;  3KI8 A;  2DYV A;  3P8K A;  4IZW A;  4IZU A;  5H8I A;  5H8L A;  3HKX A;  2E11 A;  3SYT A;  4KZF A;  3IW3 A;  2VHI A;  4GYN A;  4HGD A;  2UXY A;  5H8J A;  4H5U A;  3SEZ A;  3ILV A;  2GGK A;  1EMS A;  2E2L A;  4F4H A;  4IZS A;  5H8K A;  3SEQ A;  3WUY A;  4LF0 A;  4CYG A;  3SDB A;  4IZV A;  4HG5 A;  4CYY A;  3DLA A;  1ERZ A; 
#chains in the Genus database with same CATH topology
 1F89 A;  4GYL A;  1UF8 A;  4HG3 A;  2E2K A;  1UF7 A;  4IZT A;  3KLC A;  1FO6 A;  2PLQ A;  5KHA A;  2VHH A;  3N05 A;  2DYU A;  5JQN A;  1UF4 A;  3IVZ A;  2W1V A;  3SZG A;  4CYF A;  1UF5 A;  1J31 A;  2GGL A;  3KI8 A;  2DYV A;  3P8K A;  4IZW A;  4IZU A;  5H8I A;  5H8L A;  3HKX A;  2E11 A;  3SYT A;  4KZF A;  3IW3 A;  2VHI A;  4GYN A;  4HGD A;  2UXY A;  5H8J A;  4H5U A;  3SEZ A;  3ILV A;  2GGK A;  1EMS A;  2E2L A;  4F4H A;  4IZS A;  5H8K A;  3SEQ A;  3WUY A;  4LF0 A;  4CYG A;  3SDB A;  4IZV A;  4HG5 A;  4CYY A;  3DLA A;  1ERZ A; 
#chains in the Genus database with same CATH homology
 1F89 A;  4GYL A;  1UF8 A;  4HG3 A;  2E2K A;  1UF7 A;  4IZT A;  3KLC A;  1FO6 A;  2PLQ A;  5KHA A;  2VHH A;  3N05 A;  2DYU A;  5JQN A;  1UF4 A;  3IVZ A;  2W1V A;  3SZG A;  4CYF A;  1UF5 A;  1J31 A;  2GGL A;  3KI8 A;  2DYV A;  3P8K A;  4IZW A;  4IZU A;  5H8I A;  5H8L A;  3HKX A;  2E11 A;  3SYT A;  4KZF A;  3IW3 A;  2VHI A;  4GYN A;  4HGD A;  2UXY A;  5H8J A;  4H5U A;  3SEZ A;  3ILV A;  2GGK A;  1EMS A;  2E2L A;  4F4H A;  4IZS A;  5H8K A;  3SEQ A;  3WUY A;  4LF0 A;  4CYG A;  3SDB A;  4IZV A;  4HG5 A;  4CYY A;  3DLA A;  1ERZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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