4H3ZA

Crystal structure of a symmetric dimer of a trna (guanine-(n(1)-)-methyltransferase from burkholderia phymatum bound to s-adenosyl homocystein in both half-sites
Total Genus 81
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
81
Knots found
sequence length
255
structure length
249
Chain Sequence
SMQFDIVTLFPDMFRALTDWGITSRAAKQERYGLRTWNPRDFTTDNYRTIDDRPYGGGPGMVMLARPLEDAINAAKAAQAEQGIGGARVVMMSPQGATLNHDKVMRFAAEPGLILLCGRYEAIDQRLIDRVVDEEVSLGDFVLSGGELPAMALIDAVVRHLPGVLNQDSFVDGLLDCPHYTRPEEYDGVRVPDVLLGGHHAEIEQWRRREALRNTWLKRPDLIVQARKNKLLSRADEAWLASLAKDASK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords tRNA (guanine-N(1)-)-methyltransferase
publication title Combining functional and structural genomics to sample the essential Burkholderia structome.
pubmed doi rcsb
source organism Burkholderia phymatum
total genus 81
structure length 249
sequence length 255
chains with identical sequence B
other databases KnotProt 2.0: K +31
ec nomenclature ec 2.1.1.228: tRNA (guanine(37)-N(1))-methyltransferase.
pdb deposition date 2012-09-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01746 tRNA_m1G_MT tRNA (Guanine-1)-methyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1270.20 Mainly Alpha Orthogonal Bundle Trp Operon Repressor; Chain A tRNA(m1g37)methyltransferase, domain 2 4h3zA02
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 4h3zA01
4YVIA 1NS5A 3GYQA 4L69A 4CNGA 3KNUA 4YQ4A 2I6DA 2O3AA 4MCCA 2EGWA 1O6DA 3NK6A 4CNDA 3ILKA 1VHKA 3BBDA 4YQCA 4X3LA 1Z85A 1GZ0A 4KGNA 4YQSA 1MXIA 4FAKA 2V3KA 1UAMA 3KTYA 3O7BA 4MCDA 4YVJA 1OY5A 1NXZA 4YQNA 2EGVA 5GMBA 5GMCA 4YQDA 4YQGA 1TO0A 4YQRA 4YPXA 4CNFA 3AI9X 4YQJA 3IC6A 1ZJRA 3OIIA 4YVGA 4YQKA 5CO4A 4CNEA 1IPAA 4YQQA 3AXZA 4YQ7A 3E5YA 3L8UA 3QUVA 4IG6A 5D9FA 1VH0A 4X3MA 4YPWA 2YY8A 4YQOA 3ONPA 4YQ6A 1K3RA 4KDZA 1V2XA 1VHYA 3IEFA 4YQ0A 1UAJA 4YQ9A 4H3YA 4YQAA 4XBOA 3NK7A 1V6ZA 4J3CA 4YQ3A 4YPYA 4YVKA 4RG1A 3AIAA 4YQ2A 5GM8A 4YQPA 4MCBA 4E8BA 4YQLA 4YQBA 4YQ8A 2HA8A 3BBHA 5FAIA 4YPZA 4H3ZA 1P9PA 4JAKA 4JALA 3KY7A 1J85A 2CX8A 3OIJA 4YQTA 1UALA 4YQ5A 4YQIA 4YVHA 3KW2A 2QWVA 3N4KA 1X7PA 3N4JA 3DCMX 2Z0YA 3OINA 2QMMA 4PZKA 4YQ1A 3BBEA 1X7OA 2V3JA 1UAKA
chains in the Genus database with same CATH superfamily
4YVIA 1NS5A 3GYQA 4L69A 4CNGA 3KNUA 4YQ4A 2I6DA 2O3AA 4MCCA 2EGWA 1O6DA 3NK6A 4JWFA 4CNDA 3ILKA 1VHKA 3BBDA 4YQCA 3SSWN 4X3LA 1Z85A 1GZ0A 4KGNA 4YQSA 3FRWA 1MXIA 4FAKA 2V3KA 1UAMA 3KTYA 4JWJA 3O7BA 4MCDA 4YVJA 1OY5A 1NXZA 4YQNA 2EGVA 5GMBA 5GMCA 4YQDA 4YQGA 4JWGA 4YQRA 1TO0A 4YPXA 4CNFA 3AI9X 4YQJA 3IC6A 1ZJRA 3OIIA 1TRRA 4YVGA 4YQKA 5CO4A 4CNEA 1IPAA 4YQQA 3AXZA 4YQ7A 3E5YA 3L8UA 3QUVA 4IG6A 5D9FA 1VH0A 2OZ9R 4X3MA 4YPWA 2YY8A 4YQOA 1WRTR 3ONPA 4YQ6A 1K3RA 4KDZA 1V2XA 4JWHA 1VHYA 2XDIA 3IEFA 4YQ0A 4FMWA 1MI7R 1UAJA 4YQ9A 4H3YA 4YQAA 4XBOA 3NK7A 1V6ZA 4J3CA 4YQ3A 4YPYA 4YVKA 4RG1A 3SSXN 3AIAA 4YQ2A 5GM8A 4YQPA 4MCBA 4E8BA 3WRPA 1JHGA 1CO0A 4YQLA 4YQBA 3G1CA 4YQ8A 2HA8A 3BBHA 5FAIA 4YPZA 4H3ZA 1P9PA 4JAKA 4JALA 1TROA 3KY7A 1J85A 2CX8A 3OIJA 4YQTA 1UALA 4YQ5A 4YQIA 4YVHA 3KW2A 2QWVA 3N4KA 1X7PA 3N4JA 1WRSR 3DCMX 2Z0YA 3KORA 3OINA 2QMMA 1RCSA 4PZKA 1WRPR 4YQ1A 3BBEA 1X7OA 2V3JA 1ZT9A 1UAKA
chains in the Genus database with same CATH topology
4YVIA 1NS5A 3GYQA 4L69A 4CNGA 3KNUA 4YQ4A 2I6DA 2O3AA 4MCCA 2EGWA 1O6DA 3NK6A 4JWFA 4CNDA 3ILKA 1VHKA 3BBDA 4YQCA 4X3LA 1Z85A 1GZ0A 4KGNA 4YQSA 1MXIA 4FAKA 2V3KA 1UAMA 3KTYA 4JWJA 3O7BA 4MCDA 4YVJA 1OY5A 1NXZA 4YQNA 2EGVA 5GMBA 5GMCA 4YQDA 4YQGA 4JWGA 1TO0A 4YQRA 4YPXA 4CNFA 3AI9X 4YQJA 3IC6A 1ZJRA 3OIIA 4YVGA 4YQKA 5CO4A 4CNEA 1IPAA 4YQQA 3AXZA 4YQ7A 3E5YA 3L8UA 3QUVA 4IG6A 5D9FA 1VH0A 4X3MA 4YPWA 2YY8A 4YQOA 3ONPA 4YQ6A 1K3RA 4KDZA 1V2XA 4JWHA 1VHYA 3IEFA 4YQ0A 4FMWA 1UAJA 4YQ9A 4H3YA 4YQAA 4XBOA 3NK7A 1V6ZA 4J3CA 4YQ3A 4YPYA 4YVKA 4RG1A 3AIAA 4YQ2A 5GM8A 4YQPA 4MCBA 4E8BA 4YQLA 4YQBA 4YQ8A 2HA8A 3BBHA 5FAIA 4YPZA 4H3ZA 1P9PA 4JAKA 4JALA 3KY7A 1J85A 2CX8A 3OIJA 4YQTA 1UALA 4YQ5A 4YQIA 4YVHA 3KW2A 2QWVA 3N4KA 1X7PA 3N4JA 3DCMX 2Z0YA 3OINA 2QMMA 4PZKA 4YQ1A 3BBEA 1X7OA 2V3JA 1UAKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4YVI A;  1NS5 A;  3GYQ A;  4L69 A;  4CNG A;  3KNU A;  4YQ4 A;  2I6D A;  2O3A A;  4MCC A;  2EGW A;  1O6D A;  3NK6 A;  4CND A;  3ILK A;  1VHK A;  3BBD A;  4YQC A;  4X3L A;  1Z85 A;  1GZ0 A;  4KGN A;  4YQS A;  1MXI A;  4FAK A;  2V3K A;  1UAM A;  3KTY A;  3O7B A;  4MCD A;  4YVJ A;  1OY5 A;  1NXZ A;  4YQN A;  2EGV A;  5GMB A;  5GMC A;  4YQD A;  4YQG A;  1TO0 A;  4YQR A;  4YPX A;  4CNF A;  3AI9 X;  4YQJ A;  3IC6 A;  1ZJR A;  3OII A;  4YVG A;  4YQK A;  5CO4 A;  4CNE A;  1IPA A;  4YQQ A;  3AXZ A;  4YQ7 A;  3E5Y A;  3L8U A;  3QUV A;  4IG6 A;  5D9F A;  1VH0 A;  4X3M A;  4YPW A;  2YY8 A;  4YQO A;  3ONP A;  4YQ6 A;  1K3R A;  4KDZ A;  1V2X A;  1VHY A;  3IEF A;  4YQ0 A;  1UAJ A;  4YQ9 A;  4H3Y A;  4YQA A;  4XBO A;  3NK7 A;  1V6Z A;  4J3C A;  4YQ3 A;  4YPY A;  4YVK A;  4RG1 A;  3AIA A;  4YQ2 A;  5GM8 A;  4YQP A;  4MCB A;  4E8B A;  4YQL A;  4YQB A;  4YQ8 A;  2HA8 A;  3BBH A;  5FAI A;  4YPZ A;  4H3Z A;  1P9P A;  4JAK A;  4JAL A;  3KY7 A;  1J85 A;  2CX8 A;  3OIJ A;  4YQT A;  1UAL A;  4YQ5 A;  4YQI A;  4YVH A;  3KW2 A;  2QWV A;  3N4K A;  1X7P A;  3N4J A;  3DCM X;  2Z0Y A;  3OIN A;  2QMM A;  4PZK A;  4YQ1 A;  3BBE A;  1X7O A;  2V3J A;  1UAK A; 
#chains in the Genus database with same CATH topology
 4YVI A;  1NS5 A;  3GYQ A;  4L69 A;  4CNG A;  3KNU A;  4YQ4 A;  2I6D A;  2O3A A;  4MCC A;  2EGW A;  1O6D A;  3NK6 A;  4JWF A;  4CND A;  3ILK A;  1VHK A;  3BBD A;  4YQC A;  3SSW N;  4X3L A;  1Z85 A;  1GZ0 A;  4KGN A;  4YQS A;  3FRW A;  1MXI A;  4FAK A;  2V3K A;  1UAM A;  3KTY A;  4JWJ A;  3O7B A;  4MCD A;  4YVJ A;  1OY5 A;  1NXZ A;  4YQN A;  2EGV A;  5GMB A;  5GMC A;  4YQD A;  4YQG A;  4JWG A;  4YQR A;  1TO0 A;  4YPX A;  4CNF A;  3AI9 X;  4YQJ A;  3IC6 A;  1ZJR A;  3OII A;  1TRR A;  4YVG A;  4YQK A;  5CO4 A;  4CNE A;  1IPA A;  4YQQ A;  3AXZ A;  4YQ7 A;  3E5Y A;  3L8U A;  3QUV A;  4IG6 A;  5D9F A;  1VH0 A;  2OZ9 R;  4X3M A;  4YPW A;  2YY8 A;  4YQO A;  1WRT R;  3ONP A;  4YQ6 A;  1K3R A;  4KDZ A;  1V2X A;  4JWH A;  1VHY A;  2XDI A;  3IEF A;  4YQ0 A;  4FMW A;  1MI7 R;  1UAJ A;  4YQ9 A;  4H3Y A;  4YQA A;  4XBO A;  3NK7 A;  1V6Z A;  4J3C A;  4YQ3 A;  4YPY A;  4YVK A;  4RG1 A;  3SSX N;  3AIA A;  4YQ2 A;  5GM8 A;  4YQP A;  4MCB A;  4E8B A;  3WRP A;  1JHG A;  1CO0 A;  4YQL A;  4YQB A;  3G1C A;  4YQ8 A;  2HA8 A;  3BBH A;  5FAI A;  4YPZ A;  4H3Z A;  1P9P A;  4JAK A;  4JAL A;  1TRO A;  3KY7 A;  1J85 A;  2CX8 A;  3OIJ A;  4YQT A;  1UAL A;  4YQ5 A;  4YQI A;  4YVH A;  3KW2 A;  2QWV A;  3N4K A;  1X7P A;  3N4J A;  1WRS R;  3DCM X;  2Z0Y A;  3KOR A;  3OIN A;  2QMM A;  1RCS A;  4PZK A;  1WRP R;  4YQ1 A;  3BBE A;  1X7O A;  2V3J A;  1ZT9 A;  1UAK A; 
#chains in the Genus database with same CATH homology
 4YVI A;  1NS5 A;  3GYQ A;  4L69 A;  4CNG A;  3KNU A;  4YQ4 A;  2I6D A;  2O3A A;  4MCC A;  2EGW A;  1O6D A;  3NK6 A;  4JWF A;  4CND A;  3ILK A;  1VHK A;  3BBD A;  4YQC A;  4X3L A;  1Z85 A;  1GZ0 A;  4KGN A;  4YQS A;  1MXI A;  4FAK A;  2V3K A;  1UAM A;  3KTY A;  4JWJ A;  3O7B A;  4MCD A;  4YVJ A;  1OY5 A;  1NXZ A;  4YQN A;  2EGV A;  5GMB A;  5GMC A;  4YQD A;  4YQG A;  4JWG A;  1TO0 A;  4YQR A;  4YPX A;  4CNF A;  3AI9 X;  4YQJ A;  3IC6 A;  1ZJR A;  3OII A;  4YVG A;  4YQK A;  5CO4 A;  4CNE A;  1IPA A;  4YQQ A;  3AXZ A;  4YQ7 A;  3E5Y A;  3L8U A;  3QUV A;  4IG6 A;  5D9F A;  1VH0 A;  4X3M A;  4YPW A;  2YY8 A;  4YQO A;  3ONP A;  4YQ6 A;  1K3R A;  4KDZ A;  1V2X A;  4JWH A;  1VHY A;  3IEF A;  4YQ0 A;  4FMW A;  1UAJ A;  4YQ9 A;  4H3Y A;  4YQA A;  4XBO A;  3NK7 A;  1V6Z A;  4J3C A;  4YQ3 A;  4YPY A;  4YVK A;  4RG1 A;  3AIA A;  4YQ2 A;  5GM8 A;  4YQP A;  4MCB A;  4E8B A;  4YQL A;  4YQB A;  4YQ8 A;  2HA8 A;  3BBH A;  5FAI A;  4YPZ A;  4H3Z A;  1P9P A;  4JAK A;  4JAL A;  3KY7 A;  1J85 A;  2CX8 A;  3OIJ A;  4YQT A;  1UAL A;  4YQ5 A;  4YQI A;  4YVH A;  3KW2 A;  2QWV A;  3N4K A;  1X7P A;  3N4J A;  3DCM X;  2Z0Y A;  3OIN A;  2QMM A;  4PZK A;  4YQ1 A;  3BBE A;  1X7O A;  2V3J A;  1UAK A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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